RNA–Protein interactions for RNA: ENST00000427943.1

PSPC1-202, Transcript of paraspeckle component 1, humanhuman

TSL 5

Gene PSPC1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-202ENST00000427943 C1orf141Q5JVX7 400 aa24.94■■□□□ 1.58
PSPC1-202ENST00000427943 KLHL34Q8N239 644 aa24.94■■□□□ 1.58
PSPC1-202ENST00000427943 ERVV-2B6SEH9 535 aa24.93■■□□□ 1.58
PSPC1-202ENST00000427943 HMOX1P09601 288 aa24.93■■□□□ 1.58
PSPC1-202ENST00000427943 MSL1Q68DK7 614 aa24.93■■□□□ 1.58
PSPC1-202ENST00000427943 LINC00116Q8NCU8 138 aa24.93■■□□□ 1.58
PSPC1-202ENST00000427943 MAP3K5Q99683 1374 aa24.93■■□□□ 1.58
PSPC1-202ENST00000427943 ITPK1Q13572 414 aa24.92■■□□□ 1.58
PSPC1-202ENST00000427943 SMIM5Q71RC9 77 aa24.92■■□□□ 1.58
PSPC1-202ENST00000427943 AMIGO3Q86WK7 504 aa24.92■■□□□ 1.58
PSPC1-202ENST00000427943 PHF14O94880 888 aa24.91■■□□□ 1.58
PSPC1-202ENST00000427943 HMGB2P26583 209 aaKnown RBP24.91■■□□□ 1.58
PSPC1-202ENST00000427943 ATP6V1AP38606 617 aa24.91■■□□□ 1.58
PSPC1-202ENST00000427943 DIAPH1O60610 1272 aaKnown RBP24.9■■□□□ 1.58
PSPC1-202ENST00000427943 CABP4P57796 275 aa24.9■■□□□ 1.58
PSPC1-202ENST00000427943 FLAD1Q8NFF5 587 aa24.89■■□□□ 1.58
PSPC1-202ENST00000427943 RBM42Q9BTD8 480 aaKnown RBP24.88■■□□□ 1.57
PSPC1-202ENST00000427943 TJP1Q07157 1748 aa24.88■■□□□ 1.57
PSPC1-202ENST00000427943 CHD4Q14839 1912 aa24.88■■□□□ 1.57
PSPC1-202ENST00000427943 MYH14Q7Z406 1995 aaKnown RBP24.86■■□□□ 1.57
PSPC1-202ENST00000427943 ADAMTS7Q9UKP4 1686 aa24.86■■□□□ 1.57
PSPC1-202ENST00000427943 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.86■■□□□ 1.57
PSPC1-202ENST00000427943 SLC4A9Q96Q91 983 aa24.86■■□□□ 1.57
PSPC1-202ENST00000427943 GNPATO15228 680 aa24.85■■□□□ 1.57
PSPC1-202ENST00000427943 YY1P25490 414 aa24.85■■□□□ 1.57
PSPC1-202ENST00000427943 C4AP0C0L4 1744 aa24.84■■□□□ 1.57
PSPC1-202ENST00000427943 CICQ96RK0 1608 aaPredicted RBP24.84■■□□□ 1.57
PSPC1-202ENST00000427943 AKAP4Q5JQC9 854 aa24.84■■□□□ 1.57
PSPC1-202ENST00000427943 NFATC2IPQ8NCF5 419 aa24.84■■□□□ 1.57
PSPC1-202ENST00000427943 MRC1P22897 1456 aa24.83■■□□□ 1.57
PSPC1-202ENST00000427943 U2SURPO15042 1029 aaKnown RBP24.83■■□□□ 1.57
PSPC1-202ENST00000427943 SSFA2P28290 1259 aa24.83■■□□□ 1.57
PSPC1-202ENST00000427943 NLGN2Q8NFZ4 835 aa24.82■■□□□ 1.56
PSPC1-202ENST00000427943 MTHFSDQ2M296 383 aaKnown RBP24.81■■□□□ 1.56
PSPC1-202ENST00000427943 PTCD1O75127 700 aaKnown RBP24.8■■□□□ 1.56
PSPC1-202ENST00000427943 LGR6Q9HBX8 967 aa24.8■■□□□ 1.56
PSPC1-202ENST00000427943 UBR2Q8IWV8 1755 aa24.77■■□□□ 1.56
PSPC1-202ENST00000427943 RNMTO43148 476 aaKnown RBP24.77■■□□□ 1.56
PSPC1-202ENST00000427943 PELP1Q8IZL8 1130 aaKnown RBP24.77■■□□□ 1.56
PSPC1-202ENST00000427943 SLC52A2Q9HAB3 445 aa24.77■■□□□ 1.56
PSPC1-202ENST00000427943 SIPA1L3O60292 1781 aaPredicted RBP24.77■■□□□ 1.56
PSPC1-202ENST00000427943 GPR162Q16538 588 aa24.76■■□□□ 1.55
PSPC1-202ENST00000427943 RTCBQ9Y3I0 505 aaKnown RBP24.76■■□□□ 1.55
PSPC1-202ENST00000427943 CNTNAP4Q9C0A0 1308 aa24.76■■□□□ 1.55
PSPC1-202ENST00000427943 CFAP53Q96M91 514 aa24.75■■□□□ 1.55
PSPC1-202ENST00000427943 UTRNP46939 3433 aa24.74■■□□□ 1.55
PSPC1-202ENST00000427943 PPP2R1AP30153 589 aa24.74■■□□□ 1.55
PSPC1-202ENST00000427943 KCPQ6ZWJ8 1503 aa24.74■■□□□ 1.55
PSPC1-202ENST00000427943 SLC39A6Q13433 755 aa24.72■■□□□ 1.55
PSPC1-202ENST00000427943 RC3H1Q5TC82 1133 aaKnown RBP24.72■■□□□ 1.55
PSPC1-202ENST00000427943 KIF13BQ9NQT8 1826 aa24.71■■□□□ 1.55
PSPC1-202ENST00000427943 CRKLP46109 303 aaKnown RBP24.71■■□□□ 1.55
PSPC1-202ENST00000427943 TRAPPC3LQ5T215 181 aa24.71■■□□□ 1.55
PSPC1-202ENST00000427943 RPS6KA4O75676 772 aa24.7■■□□□ 1.54
PSPC1-202ENST00000427943 GOLGB1Q14789 3259 aaKnown RBP24.7■■□□□ 1.54
PSPC1-202ENST00000427943 PRKAR2BP31323 418 aa24.69■■□□□ 1.54
PSPC1-202ENST00000427943 GAS2L2Q8NHY3 880 aa24.69■■□□□ 1.54
PSPC1-202ENST00000427943 ARHGEF1Q92888 912 aaKnown RBP24.69■■□□□ 1.54
PSPC1-202ENST00000427943 CD2APQ9Y5K6 639 aa24.69■■□□□ 1.54
PSPC1-202ENST00000427943 RSPH6AQ9H0K4 717 aa24.68■■□□□ 1.54
PSPC1-202ENST00000427943 KIAA1551Q9HCM1 1747 aa24.67■■□□□ 1.54
PSPC1-202ENST00000427943 MMP10P09238 476 aa24.67■■□□□ 1.54
PSPC1-202ENST00000427943 ADRA2BP18089 450 aa24.67■■□□□ 1.54
PSPC1-202ENST00000427943 DNAJC10Q8IXB1 793 aa24.67■■□□□ 1.54
PSPC1-202ENST00000427943 NUDCQ9Y266 331 aa24.67■■□□□ 1.54
PSPC1-202ENST00000427943 N4BP2Q86UW6 1770 aaPredicted RBP24.67■■□□□ 1.54
PSPC1-202ENST00000427943 GNAT3A8MTJ3 354 aa24.66■■□□□ 1.54
PSPC1-202ENST00000427943 YBX3P16989 372 aaKnown RBP eCLIP24.66■■□□□ 1.54
PSPC1-202ENST00000427943 RFC4P35249 363 aa24.66■■□□□ 1.54
PSPC1-202ENST00000427943 PHACTR3Q96KR7 559 aa24.66■■□□□ 1.54
PSPC1-202ENST00000427943 U2AF1L5P0DN76 240 aaPredicted RBP24.65■■□□□ 1.54
PSPC1-202ENST00000427943 U2AF1Q01081 240 aaKnown RBP eCLIP24.65■■□□□ 1.54
PSPC1-202ENST00000427943 DLG5Q8TDM6 1919 aa24.65■■□□□ 1.54
PSPC1-202ENST00000427943 GYS1P13807 737 aa24.64■■□□□ 1.54
PSPC1-202ENST00000427943 TEFQ10587 303 aa24.63■■□□□ 1.53
PSPC1-202ENST00000427943 INTS5Q6P9B9 1019 aaKnown RBP24.63■■□□□ 1.53
PSPC1-202ENST00000427943 IL17REQ8NFR9 667 aa24.63■■□□□ 1.53
PSPC1-202ENST00000427943 NLGN1Q8N2Q7 840 aa24.62■■□□□ 1.53
PSPC1-202ENST00000427943 CCDC87Q9NVE4 849 aa24.62■■□□□ 1.53
PSPC1-202ENST00000427943 SRP68Q9UHB9 627 aaKnown RBP24.62■■□□□ 1.53
PSPC1-202ENST00000427943 WWC3Q9ULE0 1092 aa24.62■■□□□ 1.53
PSPC1-202ENST00000427943 CYP19A1P11511 503 aaPredicted RBP24.6■■□□□ 1.53
PSPC1-202ENST00000427943 TTC5Q8N0Z6 440 aa24.6■■□□□ 1.53
PSPC1-202ENST00000427943 USP42Q9H9J4 1324 aaKnown RBP24.6■■□□□ 1.53
PSPC1-202ENST00000427943 CEMIPQ8WUJ3 1361 aa24.59■■□□□ 1.53
PSPC1-202ENST00000427943 ZNF784Q8NCA9 323 aaPredicted RBP24.59■■□□□ 1.53
PSPC1-202ENST00000427943 C10orf71Q711Q0 1435 aa24.59■■□□□ 1.53
PSPC1-202ENST00000427943 BRCA1P38398 1863 aaKnown RBP24.58■■□□□ 1.53
PSPC1-202ENST00000427943 SOS1Q07889 1333 aaPredicted RBP24.58■■□□□ 1.52
PSPC1-202ENST00000427943 PXDNLA1KZ92 1463 aa24.58■■□□□ 1.52
PSPC1-202ENST00000427943 ZBTB1Q9Y2K1 713 aa24.57■■□□□ 1.52
PSPC1-202ENST00000427943 AFDNP55196 1824 aaKnown RBP24.56■■□□□ 1.52
PSPC1-202ENST00000427943 COL15A1P39059 1388 aa24.56■■□□□ 1.52
PSPC1-202ENST00000427943 GRIN3BO60391 1043 aa24.56■■□□□ 1.52
PSPC1-202ENST00000427943 FCHSD2O94868 740 aa24.56■■□□□ 1.52
PSPC1-202ENST00000427943 VSIG10Q8N0Z9 540 aa24.56■■□□□ 1.52
PSPC1-202ENST00000427943 FKBP8Q14318 412 aa24.55■■□□□ 1.52
PSPC1-202ENST00000427943 ZNF790Q6PG37 636 aa24.55■■□□□ 1.52
PSPC1-202ENST00000427943 ZNF496Q96IT1 587 aaPredicted RBP24.55■■□□□ 1.52
PSPC1-202ENST00000427943 PARP3Q9Y6F1 533 aa24.55■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms