RNA–Protein interactions for RNA: ENST00000425938.5

SLC6A1-202, Transcript of solute carrier family 6 member 1, humanhuman

TSL 2

Gene SLC6A1, Length 472 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A1-202ENST00000425938 NUDCQ9Y266 331 aa23.47■■□□□ 1.35
SLC6A1-202ENST00000425938 POLD1P28340 1107 aa23.46■■□□□ 1.35
SLC6A1-202ENST00000425938 VIRMAQ69YN4 1812 aaKnown RBP23.46■■□□□ 1.35
SLC6A1-202ENST00000425938 C4BP0C0L5 1744 aa23.45■■□□□ 1.34
SLC6A1-202ENST00000425938 COL24A1Q17RW2 1714 aa23.45■■□□□ 1.34
SLC6A1-202ENST00000425938 MSH5O43196 834 aa23.45■■□□□ 1.34
SLC6A1-202ENST00000425938 COL23A1Q86Y22 540 aaPredicted RBP23.45■■□□□ 1.34
SLC6A1-202ENST00000425938 FLAD1Q8NFF5 587 aa23.45■■□□□ 1.34
SLC6A1-202ENST00000425938 MAP3K5Q99683 1374 aa23.44■■□□□ 1.34
SLC6A1-202ENST00000425938 AK7Q96M32 723 aa23.44■■□□□ 1.34
SLC6A1-202ENST00000425938 ZEB1P37275 1124 aaPredicted RBP23.43■■□□□ 1.34
SLC6A1-202ENST00000425938 ATP6V1AP38606 617 aa23.43■■□□□ 1.34
SLC6A1-202ENST00000425938 MTHFSDQ2M296 383 aaKnown RBP23.43■■□□□ 1.34
SLC6A1-202ENST00000425938 NFATC2IPQ8NCF5 419 aa23.42■■□□□ 1.34
SLC6A1-202ENST00000425938 RBM42Q9BTD8 480 aaKnown RBP23.41■■□□□ 1.34
SLC6A1-202ENST00000425938 GAS2L2Q8NHY3 880 aa23.4■■□□□ 1.34
SLC6A1-202ENST00000425938 ZNF831Q5JPB2 1677 aa23.4■■□□□ 1.34
SLC6A1-202ENST00000425938 UBR3Q6ZT12 1888 aa23.39■■□□□ 1.34
SLC6A1-202ENST00000425938 U2AF1L5P0DN76 240 aaPredicted RBP23.39■■□□□ 1.33
SLC6A1-202ENST00000425938 U2AF1Q01081 240 aaKnown RBP eCLIP23.39■■□□□ 1.33
SLC6A1-202ENST00000425938 DDX10Q13206 875 aaKnown RBP23.39■■□□□ 1.33
SLC6A1-202ENST00000425938 LINC00116Q8NCU8 138 aa23.39■■□□□ 1.33
SLC6A1-202ENST00000425938 RNMTO43148 476 aaKnown RBP23.38■■□□□ 1.33
SLC6A1-202ENST00000425938 ITPK1Q13572 414 aa23.38■■□□□ 1.33
SLC6A1-202ENST00000425938 SLC52A2Q9HAB3 445 aa23.38■■□□□ 1.33
SLC6A1-202ENST00000425938 LGR6Q9HBX8 967 aa23.38■■□□□ 1.33
SLC6A1-202ENST00000425938 PRKAR2BP31323 418 aa23.37■■□□□ 1.33
SLC6A1-202ENST00000425938 YY1P25490 414 aa23.36■■□□□ 1.33
SLC6A1-202ENST00000425938 RSPH6AQ9H0K4 717 aa23.36■■□□□ 1.33
SLC6A1-202ENST00000425938 MRC1P22897 1456 aa23.36■■□□□ 1.33
SLC6A1-202ENST00000425938 ADAMTS7Q9UKP4 1686 aa23.35■■□□□ 1.33
SLC6A1-202ENST00000425938 KLHL34Q8N239 644 aa23.35■■□□□ 1.33
SLC6A1-202ENST00000425938 GNAT3A8MTJ3 354 aa23.34■■□□□ 1.33
SLC6A1-202ENST00000425938 GNPATO15228 680 aa23.34■■□□□ 1.33
SLC6A1-202ENST00000425938 PTCD1O75127 700 aaKnown RBP23.34■■□□□ 1.33
SLC6A1-202ENST00000425938 PHF14O94880 888 aa23.34■■□□□ 1.33
SLC6A1-202ENST00000425938 SSFA2P28290 1259 aa23.34■■□□□ 1.33
SLC6A1-202ENST00000425938 RALBP1Q15311 655 aa23.34■■□□□ 1.33
SLC6A1-202ENST00000425938 MSL1Q68DK7 614 aa23.34■■□□□ 1.33
SLC6A1-202ENST00000425938 COL5A3P25940 1745 aaPredicted RBP23.33■■□□□ 1.33
SLC6A1-202ENST00000425938 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.33■■□□□ 1.33
SLC6A1-202ENST00000425938 FCHSD2O94868 740 aa23.33■■□□□ 1.33
SLC6A1-202ENST00000425938 AMIGO3Q86WK7 504 aa23.33■■□□□ 1.33
SLC6A1-202ENST00000425938 SLC4A9Q96Q91 983 aa23.33■■□□□ 1.33
SLC6A1-202ENST00000425938 PHACTR3Q96KR7 559 aa23.31■■□□□ 1.32
SLC6A1-202ENST00000425938 RC3H1Q5TC82 1133 aaKnown RBP23.3■■□□□ 1.32
SLC6A1-202ENST00000425938 CNTNAP4Q9C0A0 1308 aa23.3■■□□□ 1.32
SLC6A1-202ENST00000425938 NEFMP07197 916 aa23.29■■□□□ 1.32
SLC6A1-202ENST00000425938 TEFQ10587 303 aa23.29■■□□□ 1.32
SLC6A1-202ENST00000425938 SMIM5Q71RC9 77 aa23.29■■□□□ 1.32
SLC6A1-202ENST00000425938 RTCBQ9Y3I0 505 aaKnown RBP23.29■■□□□ 1.32
SLC6A1-202ENST00000425938 MYH14Q7Z406 1995 aaKnown RBP23.29■■□□□ 1.32
SLC6A1-202ENST00000425938 UTRNP46939 3433 aa23.28■■□□□ 1.32
SLC6A1-202ENST00000425938 CICQ96RK0 1608 aaPredicted RBP23.27■■□□□ 1.32
SLC6A1-202ENST00000425938 SLC39A6Q13433 755 aa23.27■■□□□ 1.32
SLC6A1-202ENST00000425938 GPR162Q16538 588 aa23.27■■□□□ 1.32
SLC6A1-202ENST00000425938 IL17REQ8NFR9 667 aa23.27■■□□□ 1.32
SLC6A1-202ENST00000425938 TJP1Q07157 1748 aa23.27■■□□□ 1.32
SLC6A1-202ENST00000425938 TRAPPC3LQ5T215 181 aa23.26■■□□□ 1.31
SLC6A1-202ENST00000425938 NLGN2Q8NFZ4 835 aa23.26■■□□□ 1.31
SLC6A1-202ENST00000425938 SIPA1L3O60292 1781 aaPredicted RBP23.25■■□□□ 1.31
SLC6A1-202ENST00000425938 ADRA2BP18089 450 aa23.25■■□□□ 1.31
SLC6A1-202ENST00000425938 TTC5Q8N0Z6 440 aa23.25■■□□□ 1.31
SLC6A1-202ENST00000425938 RTF1Q92541 710 aaKnown RBP23.25■■□□□ 1.31
SLC6A1-202ENST00000425938 CD2APQ9Y5K6 639 aa23.25■■□□□ 1.31
SLC6A1-202ENST00000425938 RPS6KA4O75676 772 aa23.24■■□□□ 1.31
SLC6A1-202ENST00000425938 PNNQ9H307 717 aaKnown RBP23.24■■□□□ 1.31
SLC6A1-202ENST00000425938 MYBBP1AQ9BQG0 1328 aaKnown RBP23.24■■□□□ 1.31
SLC6A1-202ENST00000425938 UBR2Q8IWV8 1755 aa23.24■■□□□ 1.31
SLC6A1-202ENST00000425938 CRKLP46109 303 aaKnown RBP23.23■■□□□ 1.31
SLC6A1-202ENST00000425938 CEMIPQ8WUJ3 1361 aa23.23■■□□□ 1.31
SLC6A1-202ENST00000425938 KCPQ6ZWJ8 1503 aa23.23■■□□□ 1.31
SLC6A1-202ENST00000425938 DNAJC10Q8IXB1 793 aa23.22■■□□□ 1.31
SLC6A1-202ENST00000425938 RFC4P35249 363 aa23.21■■□□□ 1.31
SLC6A1-202ENST00000425938 VSIG10Q8N0Z9 540 aa23.21■■□□□ 1.31
SLC6A1-202ENST00000425938 HTATSF1O43719 755 aaKnown RBP23.2■■□□□ 1.3
SLC6A1-202ENST00000425938 PELP1Q8IZL8 1130 aaKnown RBP23.2■■□□□ 1.3
SLC6A1-202ENST00000425938 ARHGEF1Q92888 912 aaKnown RBP23.2■■□□□ 1.3
SLC6A1-202ENST00000425938 GOLGB1Q14789 3259 aaKnown RBP23.2■■□□□ 1.3
SLC6A1-202ENST00000425938 CHD4Q14839 1912 aa23.2■■□□□ 1.3
SLC6A1-202ENST00000425938 MAPK8IP3Q9UPT6 1336 aa23.19■■□□□ 1.3
SLC6A1-202ENST00000425938 ZNF790Q6PG37 636 aa23.19■■□□□ 1.3
SLC6A1-202ENST00000425938 DLG5Q8TDM6 1919 aa23.19■■□□□ 1.3
SLC6A1-202ENST00000425938 CCDC87Q9NVE4 849 aa23.18■■□□□ 1.3
SLC6A1-202ENST00000425938 C4AP0C0L4 1744 aa23.18■■□□□ 1.3
SLC6A1-202ENST00000425938 BTBD11A6QL63 1104 aa23.17■■□□□ 1.3
SLC6A1-202ENST00000425938 CYP19A1P11511 503 aaPredicted RBP23.17■■□□□ 1.3
SLC6A1-202ENST00000425938 INTS5Q6P9B9 1019 aaKnown RBP23.17■■□□□ 1.3
SLC6A1-202ENST00000425938 MCM10Q7L590 875 aa23.17■■□□□ 1.3
SLC6A1-202ENST00000425938 NLGN1Q8N2Q7 840 aa23.17■■□□□ 1.3
SLC6A1-202ENST00000425938 PLEKHF1Q96S99 279 aa23.16■■□□□ 1.3
SLC6A1-202ENST00000425938 GRIN3BO60391 1043 aa23.15■■□□□ 1.3
SLC6A1-202ENST00000425938 STARD3NLO95772 234 aa23.15■■□□□ 1.3
SLC6A1-202ENST00000425938 MMP10P09238 476 aa23.15■■□□□ 1.3
SLC6A1-202ENST00000425938 ZNF496Q96IT1 587 aaPredicted RBP23.15■■□□□ 1.3
SLC6A1-202ENST00000425938 FMNL2Q96PY5 1086 aa23.15■■□□□ 1.3
SLC6A1-202ENST00000425938 HEG1Q9ULI3 1381 aa23.14■■□□□ 1.3
SLC6A1-202ENST00000425938 TEX13AQ9BXU3 409 aaPredicted RBP23.14■■□□□ 1.29
SLC6A1-202ENST00000425938 PRKRIP1Q9H875 184 aaPredicted RBP23.14■■□□□ 1.29
SLC6A1-202ENST00000425938 YBX3P16989 372 aaKnown RBP eCLIP23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms