RNA–Protein interactions for RNA: ENST00000425718.1

APOE-202, Transcript of apolipoprotein E, humanhuman

TSL 1 (best)

Gene APOE, Length 923 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APOE-202ENST00000425718 RGPD4Q7Z3J3 1758 aa31.53■■■□□ 2.64
APOE-202ENST00000425718 HMGB2P26583 209 aaKnown RBP31.52■■■□□ 2.64
APOE-202ENST00000425718 BABAM1Q9NWV8 329 aa31.52■■■□□ 2.64
APOE-202ENST00000425718 NFATC2IPQ8NCF5 419 aa31.51■■■□□ 2.63
APOE-202ENST00000425718 KCNQ2O43526 872 aa31.5■■■□□ 2.63
APOE-202ENST00000425718 TAF7Q15545 349 aaPredicted RBP31.5■■■□□ 2.63
APOE-202ENST00000425718 DCTN1Q14203 1278 aa31.49■■■□□ 2.63
APOE-202ENST00000425718 PIGBQ92521 554 aa31.49■■■□□ 2.63
APOE-202ENST00000425718 BAG6P46379 1132 aa31.47■■■□□ 2.63
APOE-202ENST00000425718 WWC1Q8IX03 1113 aa31.47■■■□□ 2.63
APOE-202ENST00000425718 PAPPAQ13219 1627 aa31.46■■■□□ 2.63
APOE-202ENST00000425718 WDR63Q8IWG1 891 aa31.46■■■□□ 2.63
APOE-202ENST00000425718 BTBD11A6QL63 1104 aa31.45■■■□□ 2.63
APOE-202ENST00000425718 PLSCR1O15162 318 aa31.45■■■□□ 2.63
APOE-202ENST00000425718 APBA3O96018 575 aa31.45■■■□□ 2.63
APOE-202ENST00000425718 IL16Q14005 1332 aa31.45■■■□□ 2.62
APOE-202ENST00000425718 TTC5Q8N0Z6 440 aa31.44■■■□□ 2.62
APOE-202ENST00000425718 LY75O60449 1722 aa31.44■■■□□ 2.62
APOE-202ENST00000425718 KDM3BQ7LBC6 1761 aa31.43■■■□□ 2.62
APOE-202ENST00000425718 UPF1Q92900 1129 aaKnown RBP eCLIP31.43■■■□□ 2.62
APOE-202ENST00000425718 GNAI1P63096 354 aa31.42■■■□□ 2.62
APOE-202ENST00000425718 UBR2Q8IWV8 1755 aa31.41■■■□□ 2.62
APOE-202ENST00000425718 HNRNPUQ00839 825 aaKnown RBP eCLIP31.41■■■□□ 2.62
APOE-202ENST00000425718 CFAP44Q96MT7 982 aa31.41■■■□□ 2.62
APOE-202ENST00000425718 THUMPD2Q9BTF0 503 aaKnown RBP31.41■■■□□ 2.62
APOE-202ENST00000425718 IFT57Q9NWB7 429 aa31.41■■■□□ 2.62
APOE-202ENST00000425718 SALL2Q9Y467 1007 aaPredicted RBP31.41■■■□□ 2.62
APOE-202ENST00000425718 ZNF831Q5JPB2 1677 aa31.41■■■□□ 2.62
APOE-202ENST00000425718 PALLDQ8WX93 1383 aa31.4■■■□□ 2.62
APOE-202ENST00000425718 ZNF790Q6PG37 636 aa31.38■■■□□ 2.61
APOE-202ENST00000425718 ATG3Q9NT62 314 aa31.38■■■□□ 2.61
APOE-202ENST00000425718 TSPYL4Q9UJ04 414 aa31.38■■■□□ 2.61
APOE-202ENST00000425718 ASAP1Q9ULH1 1129 aa31.37■■■□□ 2.61
APOE-202ENST00000425718 SLC27A3Q5K4L6 730 aa31.36■■■□□ 2.61
APOE-202ENST00000425718 PTF1AQ7RTS3 328 aa31.36■■■□□ 2.61
APOE-202ENST00000425718 ZNF521Q96K83 1311 aa31.35■■■□□ 2.61
APOE-202ENST00000425718 CHL1O00533 1208 aa31.35■■■□□ 2.61
APOE-202ENST00000425718 FMNL2Q96PY5 1086 aa31.34■■■□□ 2.61
APOE-202ENST00000425718 LAS1LQ9Y4W2 734 aaKnown RBP31.34■■■□□ 2.61
APOE-202ENST00000425718 GOLGA2Q08379 1002 aa31.33■■■□□ 2.61
APOE-202ENST00000425718 VSIG10Q8N0Z9 540 aa31.33■■■□□ 2.61
APOE-202ENST00000425718 CICQ96RK0 1608 aaPredicted RBP31.33■■■□□ 2.61
APOE-202ENST00000425718 ZBED9Q6R2W3 1325 aa31.32■■■□□ 2.6
APOE-202ENST00000425718 ZNF853P0CG23 659 aa31.32■■■□□ 2.6
APOE-202ENST00000425718 MYH16Q9H6N6 1097 aa31.32■■■□□ 2.6
APOE-202ENST00000425718 LOC102724428A0A0B4J2F2 783 aa31.31■■■□□ 2.6
APOE-202ENST00000425718 SIK1P57059 783 aa31.31■■■□□ 2.6
APOE-202ENST00000425718 SLC39A6Q13433 755 aa31.31■■■□□ 2.6
APOE-202ENST00000425718 KCPQ6ZWJ8 1503 aa31.3■■■□□ 2.6
APOE-202ENST00000425718 RREB1Q92766 1687 aa31.3■■■□□ 2.6
APOE-202ENST00000425718 SENP3-EIF4A1A0A087X0R7 540 aa31.3■■■□□ 2.6
APOE-202ENST00000425718 RBM42Q9BTD8 480 aaKnown RBP31.3■■■□□ 2.6
APOE-202ENST00000425718 TAF1LQ8IZX4 1826 aa31.29■■■□□ 2.6
APOE-202ENST00000425718 E9PSI1 815 aa31.29■■■□□ 2.6
APOE-202ENST00000425718 TEX13AQ9BXU3 409 aaPredicted RBP31.29■■■□□ 2.6
APOE-202ENST00000425718 CAMKK2Q96RR4 588 aa31.28■■■□□ 2.6
APOE-202ENST00000425718 CCNL1Q9UK58 526 aaPredicted RBP31.28■■■□□ 2.6
APOE-202ENST00000425718 PTCD1O75127 700 aaKnown RBP31.27■■■□□ 2.6
APOE-202ENST00000425718 EN1Q05925 392 aaPredicted RBP31.27■■■□□ 2.6
APOE-202ENST00000425718 TXNRD1Q16881 649 aa31.27■■■□□ 2.6
APOE-202ENST00000425718 CHMP4AQ9BY43 222 aa31.27■■■□□ 2.6
APOE-202ENST00000425718 HEG1Q9ULI3 1381 aa31.27■■■□□ 2.6
APOE-202ENST00000425718 MBIPQ9NS73 344 aa31.26■■■□□ 2.59
APOE-202ENST00000425718 MIS18AQ9NYP9 233 aa31.26■■■□□ 2.59
APOE-202ENST00000425718 SOCS7O14512 581 aa31.25■■■□□ 2.59
APOE-202ENST00000425718 ATP6V1AP38606 617 aa31.25■■■□□ 2.59
APOE-202ENST00000425718 C5P01031 1676 aa31.25■■■□□ 2.59
APOE-202ENST00000425718 SOS1Q07889 1333 aaPredicted RBP31.24■■■□□ 2.59
APOE-202ENST00000425718 SNRPA1P09661 255 aaKnown RBP31.24■■■□□ 2.59
APOE-202ENST00000425718 EIF4A1P60842 406 aaKnown RBP31.24■■■□□ 2.59
APOE-202ENST00000425718 ZNF496Q96IT1 587 aaPredicted RBP31.24■■■□□ 2.59
APOE-202ENST00000425718 LAMB4A4D0S4 1761 aa31.23■■■□□ 2.59
APOE-202ENST00000425718 DEFB132Q7Z7B7 95 aa31.23■■■□□ 2.59
APOE-202ENST00000425718 COL5A3P25940 1745 aaPredicted RBP31.22■■■□□ 2.59
APOE-202ENST00000425718 HOXB7P09629 217 aa31.22■■■□□ 2.59
APOE-202ENST00000425718 EZH2Q15910 746 aaKnown RBP31.22■■■□□ 2.59
APOE-202ENST00000425718 TJP1Q07157 1748 aa31.21■■■□□ 2.59
APOE-202ENST00000425718 KCNQ3O43525 872 aa31.21■■■□□ 2.59
APOE-202ENST00000425718 NUP188Q5SRE5 1749 aa31.21■■■□□ 2.59
APOE-202ENST00000425718 STARD3NLO95772 234 aa31.19■■■□□ 2.58
APOE-202ENST00000425718 SLFN5Q08AF3 891 aa31.19■■■□□ 2.58
APOE-202ENST00000425718 FANCIQ9NVI1 1328 aa31.19■■■□□ 2.58
APOE-202ENST00000425718 PROM2Q8N271 834 aa31.17■■■□□ 2.58
APOE-202ENST00000425718 CACNA1FO60840 1977 aa31.16■■■□□ 2.58
APOE-202ENST00000425718 GIGYF1O75420 1035 aaPredicted RBP31.16■■■□□ 2.58
APOE-202ENST00000425718 C4BP0C0L5 1744 aa31.15■■■□□ 2.58
APOE-202ENST00000425718 NBPF14Q5TI25 921 aa31.15■■■□□ 2.58
APOE-202ENST00000425718 TSR2Q969E8 191 aaKnown RBP31.15■■■□□ 2.58
APOE-202ENST00000425718 RC3H1Q5TC82 1133 aaKnown RBP31.14■■■□□ 2.58
APOE-202ENST00000425718 SLC4A9Q96Q91 983 aa31.14■■■□□ 2.58
APOE-202ENST00000425718 LRRC4BQ9NT99 713 aa31.13■■■□□ 2.57
APOE-202ENST00000425718 CNTNAP4Q9C0A0 1308 aa31.13■■■□□ 2.57
APOE-202ENST00000425718 DNAJC10Q8IXB1 793 aa31.12■■■□□ 2.57
APOE-202ENST00000425718 ITPK1Q13572 414 aa31.11■■■□□ 2.57
APOE-202ENST00000425718 ERBB4Q15303 1308 aa31.11■■■□□ 2.57
APOE-202ENST00000425718 TRMT2AQ8IZ69 625 aaKnown RBP31.11■■■□□ 2.57
APOE-202ENST00000425718 SPINK5Q9NQ38 1064 aaPredicted RBP31.11■■■□□ 2.57
APOE-202ENST00000425718 MYH14Q7Z406 1995 aaKnown RBP31.1■■■□□ 2.57
APOE-202ENST00000425718 DUSP27Q5VZP5 1158 aa31.1■■■□□ 2.57
APOE-202ENST00000425718 QSER1Q2KHR3 1735 aa31.1■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms