RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 ATG3Q9NT62 314 aa15.74■□□□□ 0.11
SQSTM1-203ENST00000422245 PHF14O94880 888 aa15.73■□□□□ 0.11
SQSTM1-203ENST00000422245 ATP6V1AP38606 617 aa15.73■□□□□ 0.11
SQSTM1-203ENST00000422245 KDM6AO15550 1401 aaPredicted RBP15.73■□□□□ 0.11
SQSTM1-203ENST00000422245 UTRNP46939 3433 aa15.72■□□□□ 0.11
SQSTM1-203ENST00000422245 GNPATO15228 680 aa15.72■□□□□ 0.11
SQSTM1-203ENST00000422245 IL13P35225 146 aa15.72■□□□□ 0.11
SQSTM1-203ENST00000422245 ITPK1Q13572 414 aa15.72■□□□□ 0.11
SQSTM1-203ENST00000422245 C1orf141Q5JVX7 400 aa15.72■□□□□ 0.11
SQSTM1-203ENST00000422245 SULT6B1Q6IMI4 303 aa15.72■□□□□ 0.11
SQSTM1-203ENST00000422245 AMIGO3Q86WK7 504 aa15.72■□□□□ 0.11
SQSTM1-203ENST00000422245 CD2APQ9Y5K6 639 aa15.72■□□□□ 0.11
SQSTM1-203ENST00000422245 PELP1Q8IZL8 1130 aaKnown RBP15.71■□□□□ 0.11
SQSTM1-203ENST00000422245 ZNF784Q8NCA9 323 aaPredicted RBP15.71■□□□□ 0.11
SQSTM1-203ENST00000422245 CABP4P57796 275 aa15.7■□□□□ 0.1
SQSTM1-203ENST00000422245 COL5A3P25940 1745 aaPredicted RBP15.7■□□□□ 0.1
SQSTM1-203ENST00000422245 MTHFSP49914 203 aa15.69■□□□□ 0.1
SQSTM1-203ENST00000422245 SCN11AQ9UI33 1791 aa15.68■□□□□ 0.1
SQSTM1-203ENST00000422245 NPC1L1Q9UHC9 1359 aa15.68■□□□□ 0.1
SQSTM1-203ENST00000422245 PER1O15534 1290 aaPredicted RBP15.68■□□□□ 0.1
SQSTM1-203ENST00000422245 GRIN3BO60391 1043 aa15.68■□□□□ 0.1
SQSTM1-203ENST00000422245 RBM42Q9BTD8 480 aaKnown RBP15.68■□□□□ 0.1
SQSTM1-203ENST00000422245 CICQ96RK0 1608 aaPredicted RBP15.68■□□□□ 0.1
SQSTM1-203ENST00000422245 CNTNAP4Q9C0A0 1308 aa15.68■□□□□ 0.1
SQSTM1-203ENST00000422245 ADRA2BP18089 450 aa15.67■□□□□ 0.1
SQSTM1-203ENST00000422245 SMIM5Q71RC9 77 aa15.67■□□□□ 0.1
SQSTM1-203ENST00000422245 YBX3P16989 372 aaKnown RBP eCLIP15.66■□□□□ 0.1
SQSTM1-203ENST00000422245 CC2D1BQ5T0F9 858 aaKnown RBP15.66■□□□□ 0.1
SQSTM1-203ENST00000422245 RC3H1Q5TC82 1133 aaKnown RBP15.66■□□□□ 0.1
SQSTM1-203ENST00000422245 SLC4A9Q96Q91 983 aa15.66■□□□□ 0.1
SQSTM1-203ENST00000422245 RTCBQ9Y3I0 505 aaKnown RBP15.66■□□□□ 0.1
SQSTM1-203ENST00000422245 AKAP4Q5JQC9 854 aa15.65■□□□□ 0.1
SQSTM1-203ENST00000422245 DIAPH1O60610 1272 aaKnown RBP15.64■□□□□ 0.09
SQSTM1-203ENST00000422245 TRAPPC3LQ5T215 181 aa15.64■□□□□ 0.09
SQSTM1-203ENST00000422245 MRC1P22897 1456 aa15.64■□□□□ 0.09
SQSTM1-203ENST00000422245 NFATC2IPQ8NCF5 419 aa15.63■□□□□ 0.09
SQSTM1-203ENST00000422245 VIRMAQ69YN4 1812 aaKnown RBP15.63■□□□□ 0.09
SQSTM1-203ENST00000422245 C4AP0C0L4 1744 aa15.63■□□□□ 0.09
SQSTM1-203ENST00000422245 TJP1Q07157 1748 aa15.63■□□□□ 0.09
SQSTM1-203ENST00000422245 KIF13BQ9NQT8 1826 aa15.62■□□□□ 0.09
SQSTM1-203ENST00000422245 PTCD1O75127 700 aaKnown RBP15.62■□□□□ 0.09
SQSTM1-203ENST00000422245 RPS6KA4O75676 772 aa15.62■□□□□ 0.09
SQSTM1-203ENST00000422245 MMP10P09238 476 aa15.62■□□□□ 0.09
SQSTM1-203ENST00000422245 HMOX1P09601 288 aa15.62■□□□□ 0.09
SQSTM1-203ENST00000422245 MYH14Q7Z406 1995 aaKnown RBP15.62■□□□□ 0.09
SQSTM1-203ENST00000422245 ADAMTS7Q9UKP4 1686 aa15.61■□□□□ 0.09
SQSTM1-203ENST00000422245 GOLGB1Q14789 3259 aaKnown RBP15.61■□□□□ 0.09
SQSTM1-203ENST00000422245 COL3A1P02461 1466 aaPredicted RBP15.61■□□□□ 0.09
SQSTM1-203ENST00000422245 NLGN1Q8N2Q7 840 aa15.61■□□□□ 0.09
SQSTM1-203ENST00000422245 SLC52A2Q9HAB3 445 aa15.61■□□□□ 0.09
SQSTM1-203ENST00000422245 RFC4P35249 363 aa15.6■□□□□ 0.09
SQSTM1-203ENST00000422245 ARHGEF1Q92888 912 aaKnown RBP15.6■□□□□ 0.09
SQSTM1-203ENST00000422245 CRKLP46109 303 aaKnown RBP15.59■□□□□ 0.09
SQSTM1-203ENST00000422245 C10orf71Q711Q0 1435 aa15.59■□□□□ 0.09
SQSTM1-203ENST00000422245 RNMTO43148 476 aaKnown RBP15.58■□□□□ 0.08
SQSTM1-203ENST00000422245 GYS1P13807 737 aa15.58■□□□□ 0.08
SQSTM1-203ENST00000422245 MTHFSDQ2M296 383 aaKnown RBP15.58■□□□□ 0.08
SQSTM1-203ENST00000422245 KIAA1551Q9HCM1 1747 aa15.57■□□□□ 0.08
SQSTM1-203ENST00000422245 PXDNLA1KZ92 1463 aa15.57■□□□□ 0.08
SQSTM1-203ENST00000422245 GIGYF1O75420 1035 aaPredicted RBP15.56■□□□□ 0.08
SQSTM1-203ENST00000422245 LGR6Q9HBX8 967 aa15.56■□□□□ 0.08
SQSTM1-203ENST00000422245 CCDC87Q9NVE4 849 aa15.56■□□□□ 0.08
SQSTM1-203ENST00000422245 USP42Q9H9J4 1324 aaKnown RBP15.56■□□□□ 0.08
SQSTM1-203ENST00000422245 UBR2Q8IWV8 1755 aa15.55■□□□□ 0.08
SQSTM1-203ENST00000422245 ATP10DQ9P241 1426 aa15.55■□□□□ 0.08
SQSTM1-203ENST00000422245 U2SURPO15042 1029 aaKnown RBP15.55■□□□□ 0.08
SQSTM1-203ENST00000422245 C1QTNF8P60827 252 aa15.55■□□□□ 0.08
SQSTM1-203ENST00000422245 TGFB2P61812 414 aa15.55■□□□□ 0.08
SQSTM1-203ENST00000422245 CNGB1Q14028 1251 aaPredicted RBP15.55■□□□□ 0.08
SQSTM1-203ENST00000422245 GAS2L2Q8NHY3 880 aa15.55■□□□□ 0.08
SQSTM1-203ENST00000422245 PARP3Q9Y6F1 533 aa15.55■□□□□ 0.08
SQSTM1-203ENST00000422245 KCPQ6ZWJ8 1503 aa15.54■□□□□ 0.08
SQSTM1-203ENST00000422245 ADCY9O60503 1353 aa15.54■□□□□ 0.08
SQSTM1-203ENST00000422245 INTS5Q6P9B9 1019 aaKnown RBP15.54■□□□□ 0.08
SQSTM1-203ENST00000422245 DNAJC10Q8IXB1 793 aa15.54■□□□□ 0.08
SQSTM1-203ENST00000422245 CFAP53Q96M91 514 aa15.54■□□□□ 0.08
SQSTM1-203ENST00000422245 SOS1Q07889 1333 aaPredicted RBP15.53■□□□□ 0.08
SQSTM1-203ENST00000422245 SLC39A6Q13433 755 aa15.53■□□□□ 0.08
SQSTM1-203ENST00000422245 VSIG10Q8N0Z9 540 aa15.53■□□□□ 0.08
SQSTM1-203ENST00000422245 WWC3Q9ULE0 1092 aa15.53■□□□□ 0.08
SQSTM1-203ENST00000422245 N4BP2Q86UW6 1770 aaPredicted RBP15.53■□□□□ 0.08
SQSTM1-203ENST00000422245 SRP68Q9UHB9 627 aaKnown RBP15.52■□□□□ 0.08
SQSTM1-203ENST00000422245 BRCA1P38398 1863 aaKnown RBP15.52■□□□□ 0.07
SQSTM1-203ENST00000422245 GNAT3A8MTJ3 354 aa15.51■□□□□ 0.07
SQSTM1-203ENST00000422245 CYP19A1P11511 503 aaPredicted RBP15.51■□□□□ 0.07
SQSTM1-203ENST00000422245 FKBP8Q14318 412 aa15.51■□□□□ 0.07
SQSTM1-203ENST00000422245 TTC5Q8N0Z6 440 aa15.51■□□□□ 0.07
SQSTM1-203ENST00000422245 COL15A1P39059 1388 aa15.5■□□□□ 0.07
SQSTM1-203ENST00000422245 SIPA1L3O60292 1781 aaPredicted RBP15.5■□□□□ 0.07
SQSTM1-203ENST00000422245 ZPR1O75312 459 aa15.5■□□□□ 0.07
SQSTM1-203ENST00000422245 TEFQ10587 303 aa15.5■□□□□ 0.07
SQSTM1-203ENST00000422245 NUDCQ9Y266 331 aa15.5■□□□□ 0.07
SQSTM1-203ENST00000422245 DPEP1P16444 411 aa15.49■□□□□ 0.07
SQSTM1-203ENST00000422245 DDR1Q08345 913 aa15.49■□□□□ 0.07
SQSTM1-203ENST00000422245 BCS1LQ9Y276 419 aa15.49■□□□□ 0.07
SQSTM1-203ENST00000422245 ZBTB1Q9Y2K1 713 aa15.49■□□□□ 0.07
SQSTM1-203ENST00000422245 ARFGEF1Q9Y6D6 1849 aa15.48■□□□□ 0.07
SQSTM1-203ENST00000422245 SENP3-EIF4A1A0A087X0R7 540 aa15.48■□□□□ 0.07
SQSTM1-203ENST00000422245 A0A0G2JLW4 131 aa15.48■□□□□ 0.07
SQSTM1-203ENST00000422245 PRKAR2BP31323 418 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms