RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 CANXP27824 592 aaKnown RBP22.06■■□□□ 1.12
CCDC28B-202ENST00000421922 RRP1P56182 461 aaKnown RBP22.06■■□□□ 1.12
CCDC28B-202ENST00000421922 DDB1Q16531 1140 aa22.06■■□□□ 1.12
CCDC28B-202ENST00000421922 A0A0G2JS52 829 aa22.05■■□□□ 1.12
CCDC28B-202ENST00000421922 MYT1Q01538 1121 aa22.05■■□□□ 1.12
CCDC28B-202ENST00000421922 TWISTNBQ3B726 338 aaPredicted RBP22.05■■□□□ 1.12
CCDC28B-202ENST00000421922 ZNF428Q96B54 188 aa22.05■■□□□ 1.12
CCDC28B-202ENST00000421922 MRC1P22897 1456 aa22.04■■□□□ 1.12
CCDC28B-202ENST00000421922 CABP4P57796 275 aa22.04■■□□□ 1.12
CCDC28B-202ENST00000421922 SLC52A2Q9HAB3 445 aa22.04■■□□□ 1.12
CCDC28B-202ENST00000421922 RGS12O14924 1447 aa22.03■■□□□ 1.12
CCDC28B-202ENST00000421922 FAM98CQ17RN3 349 aaKnown RBP22.03■■□□□ 1.12
CCDC28B-202ENST00000421922 TRPC5Q9UL62 973 aaPredicted RBP22.03■■□□□ 1.12
CCDC28B-202ENST00000421922 RARSP54136 660 aaKnown RBP22.02■■□□□ 1.12
CCDC28B-202ENST00000421922 SMC4Q9NTJ3 1288 aa22.02■■□□□ 1.12
CCDC28B-202ENST00000421922 RNF123Q5XPI4 1314 aa22.02■■□□□ 1.11
CCDC28B-202ENST00000421922 ELL2O00472 640 aaPredicted RBP22.01■■□□□ 1.11
CCDC28B-202ENST00000421922 FKBP8Q14318 412 aa22.01■■□□□ 1.11
CCDC28B-202ENST00000421922 NKX1-1Q15270 411 aaPredicted RBP22.01■■□□□ 1.11
CCDC28B-202ENST00000421922 ERVV-2B6SEH9 535 aa22■■□□□ 1.11
CCDC28B-202ENST00000421922 C8orf58Q8NAV2 365 aa22■■□□□ 1.11
CCDC28B-202ENST00000421922 ATRNO75882 1429 aa22■■□□□ 1.11
CCDC28B-202ENST00000421922 ALDH1L2Q3SY69 923 aa21.99■■□□□ 1.11
CCDC28B-202ENST00000421922 KAT6BQ8WYB5 2073 aa21.99■■□□□ 1.11
CCDC28B-202ENST00000421922 BCAR3O75815 825 aa21.98■■□□□ 1.11
CCDC28B-202ENST00000421922 IRX6P78412 446 aaPredicted RBP21.98■■□□□ 1.11
CCDC28B-202ENST00000421922 TTC5Q8N0Z6 440 aa21.98■■□□□ 1.11
CCDC28B-202ENST00000421922 TSPYL6Q8N831 410 aa21.98■■□□□ 1.11
CCDC28B-202ENST00000421922 NFATC2IPQ8NCF5 419 aa21.98■■□□□ 1.11
CCDC28B-202ENST00000421922 BCL2L13Q9BXK5 485 aa21.98■■□□□ 1.11
CCDC28B-202ENST00000421922 SOS1Q07889 1333 aaPredicted RBP21.98■■□□□ 1.11
CCDC28B-202ENST00000421922 TOGARAM1Q9Y4F4 1720 aa21.98■■□□□ 1.11
CCDC28B-202ENST00000421922 VAMP4O75379 141 aa21.97■■□□□ 1.11
CCDC28B-202ENST00000421922 GJD4Q96KN9 370 aaPredicted RBP21.97■■□□□ 1.11
CCDC28B-202ENST00000421922 CHMP4AQ9BY43 222 aa21.97■■□□□ 1.11
CCDC28B-202ENST00000421922 QTRT2Q9H974 415 aaKnown RBP21.97■■□□□ 1.11
CCDC28B-202ENST00000421922 GLI3P10071 1580 aa21.97■■□□□ 1.11
CCDC28B-202ENST00000421922 RBM6P78332 1123 aaKnown RBP21.97■■□□□ 1.11
CCDC28B-202ENST00000421922 FRAT1Q92837 279 aaPredicted RBP21.97■■□□□ 1.11
CCDC28B-202ENST00000421922 KIF16BQ96L93 1317 aa21.96■■□□□ 1.11
CCDC28B-202ENST00000421922 THSD7AQ9UPZ6 1657 aa21.96■■□□□ 1.11
CCDC28B-202ENST00000421922 KRT24Q2M2I5 525 aa21.96■■□□□ 1.11
CCDC28B-202ENST00000421922 TMOD3Q9NYL9 352 aa21.96■■□□□ 1.11
CCDC28B-202ENST00000421922 DOT1LQ8TEK3 1739 aa21.96■■□□□ 1.11
CCDC28B-202ENST00000421922 SRCAPQ6ZRS2 3230 aa21.95■■□□□ 1.1
CCDC28B-202ENST00000421922 SSH1Q8WYL5 1049 aa21.95■■□□□ 1.1
CCDC28B-202ENST00000421922 ITGB4P16144 1822 aa21.95■■□□□ 1.1
CCDC28B-202ENST00000421922 PLIN1O60240 522 aa21.94■■□□□ 1.1
CCDC28B-202ENST00000421922 EIF4A1P60842 406 aaKnown RBP21.94■■□□□ 1.1
CCDC28B-202ENST00000421922 ZNF790Q6PG37 636 aa21.93■■□□□ 1.1
CCDC28B-202ENST00000421922 STK31Q9BXU1 1019 aa21.93■■□□□ 1.1
CCDC28B-202ENST00000421922 HOXB7P09629 217 aa21.92■■□□□ 1.1
CCDC28B-202ENST00000421922 IPO8O15397 1037 aaKnown RBP21.91■■□□□ 1.1
CCDC28B-202ENST00000421922 MS4A1P11836 297 aa21.91■■□□□ 1.1
CCDC28B-202ENST00000421922 SLC39A6Q13433 755 aa21.91■■□□□ 1.1
CCDC28B-202ENST00000421922 PAPPAQ13219 1627 aa21.91■■□□□ 1.1
CCDC28B-202ENST00000421922 KCNQ3O43525 872 aa21.9■■□□□ 1.1
CCDC28B-202ENST00000421922 CACNA1FO60840 1977 aa21.9■■□□□ 1.1
CCDC28B-202ENST00000421922 CCDC30Q5VVM6 783 aa21.9■■□□□ 1.1
CCDC28B-202ENST00000421922 ZKSCAN2Q63HK3 967 aa21.9■■□□□ 1.1
CCDC28B-202ENST00000421922 SYTL4Q96C24 671 aaPredicted RBP21.9■■□□□ 1.1
CCDC28B-202ENST00000421922 FMNL2Q96PY5 1086 aa21.9■■□□□ 1.1
CCDC28B-202ENST00000421922 ERICH6BQ5W0A0 696 aa21.89■■□□□ 1.1
CCDC28B-202ENST00000421922 MARCH10Q8NA82 808 aaPredicted RBP21.89■■□□□ 1.1
CCDC28B-202ENST00000421922 TCERG1O14776 1098 aaKnown RBP21.89■■□□□ 1.09
CCDC28B-202ENST00000421922 HDGFL1Q5TGJ6 251 aa21.89■■□□□ 1.09
CCDC28B-202ENST00000421922 FTSJ3Q8IY81 847 aaKnown RBP21.89■■□□□ 1.09
CCDC28B-202ENST00000421922 UBR2Q8IWV8 1755 aa21.88■■□□□ 1.09
CCDC28B-202ENST00000421922 MRPL50Q8N5N7 158 aaKnown RBP21.88■■□□□ 1.09
CCDC28B-202ENST00000421922 BRPF1P55201 1214 aaPredicted RBP21.87■■□□□ 1.09
CCDC28B-202ENST00000421922 NOB1Q9ULX3 412 aaKnown RBP21.87■■□□□ 1.09
CCDC28B-202ENST00000421922 EIF2S2P20042 333 aaKnown RBP21.86■■□□□ 1.09
CCDC28B-202ENST00000421922 NECTIN2Q92692 538 aa21.86■■□□□ 1.09
CCDC28B-202ENST00000421922 C5P01031 1676 aa21.86■■□□□ 1.09
CCDC28B-202ENST00000421922 LAMB4A4D0S4 1761 aa21.85■■□□□ 1.09
CCDC28B-202ENST00000421922 PDE3AQ14432 1141 aa21.85■■□□□ 1.09
CCDC28B-202ENST00000421922 SEPT12Q8IYM1 358 aa21.85■■□□□ 1.09
CCDC28B-202ENST00000421922 BCL9O00512 1426 aa21.85■■□□□ 1.09
CCDC28B-202ENST00000421922 GIGYF1O75420 1035 aaPredicted RBP21.84■■□□□ 1.09
CCDC28B-202ENST00000421922 SNRPA1P09661 255 aaKnown RBP21.84■■□□□ 1.09
CCDC28B-202ENST00000421922 PRIM1P49642 420 aaKnown RBP21.84■■□□□ 1.09
CCDC28B-202ENST00000421922 ATF7IPQ6VMQ6 1270 aa21.84■■□□□ 1.09
CCDC28B-202ENST00000421922 PIGBQ92521 554 aa21.84■■□□□ 1.09
CCDC28B-202ENST00000421922 ACSBG1Q96GR2 724 aa21.84■■□□□ 1.09
CCDC28B-202ENST00000421922 ZNF496Q96IT1 587 aaPredicted RBP21.84■■□□□ 1.09
CCDC28B-202ENST00000421922 SLC4A2P04920 1241 aa21.83■■□□□ 1.09
CCDC28B-202ENST00000421922 HEG1Q9ULI3 1381 aa21.83■■□□□ 1.08
CCDC28B-202ENST00000421922 ONECUT3O60422 494 aaPredicted RBP21.82■■□□□ 1.08
CCDC28B-202ENST00000421922 DZIP1LQ8IYY4 767 aaKnown RBP21.82■■□□□ 1.08
CCDC28B-202ENST00000421922 API5Q9BZZ5 524 aaKnown RBP21.82■■□□□ 1.08
CCDC28B-202ENST00000421922 C20orf194Q5TEA3 1177 aa21.81■■□□□ 1.08
CCDC28B-202ENST00000421922 ARHGAP45Q92619 1136 aa21.81■■□□□ 1.08
CCDC28B-202ENST00000421922 CRBNQ96SW2 442 aa21.81■■□□□ 1.08
CCDC28B-202ENST00000421922 KCPQ6ZWJ8 1503 aa21.81■■□□□ 1.08
CCDC28B-202ENST00000421922 PTPRCP08575 1304 aa21.81■■□□□ 1.08
CCDC28B-202ENST00000421922 PTCD1O75127 700 aaKnown RBP21.8■■□□□ 1.08
CCDC28B-202ENST00000421922 CLUAP1Q96AJ1 413 aa21.8■■□□□ 1.08
CCDC28B-202ENST00000421922 TRIM27P14373 513 aa21.79■■□□□ 1.08
CCDC28B-202ENST00000421922 EXOC6Q8TAG9 804 aa21.79■■□□□ 1.08
CCDC28B-202ENST00000421922 PANK1Q8TE04 598 aa21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms