RNA–Protein interactions for RNA: ENST00000414700.7

SHMT2-202, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 2,006 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-202ENST00000414700 DDB1Q16531 1140 aa20.09■□□□□ 0.81
SHMT2-202ENST00000414700 CDCA7Q9BWT1 371 aaPredicted RBP20.09■□□□□ 0.81
SHMT2-202ENST00000414700 TOGARAM1Q9Y4F4 1720 aa20.08■□□□□ 0.81
SHMT2-202ENST00000414700 ERICH6Q7L0X2 663 aa20.08■□□□□ 0.8
SHMT2-202ENST00000414700 TSPYL6Q8N831 410 aa20.08■□□□□ 0.8
SHMT2-202ENST00000414700 QTRT2Q9H974 415 aaKnown RBP20.07■□□□□ 0.8
SHMT2-202ENST00000414700 TRPC5Q9UL62 973 aaPredicted RBP20.07■□□□□ 0.8
SHMT2-202ENST00000414700 ELL2O00472 640 aaPredicted RBP20.07■□□□□ 0.8
SHMT2-202ENST00000414700 NKX1-1Q15270 411 aaPredicted RBP20.07■□□□□ 0.8
SHMT2-202ENST00000414700 C8orf58Q8NAV2 365 aa20.07■□□□□ 0.8
SHMT2-202ENST00000414700 NFATC2IPQ8NCF5 419 aa20.07■□□□□ 0.8
SHMT2-202ENST00000414700 SLC52A2Q9HAB3 445 aa20.06■□□□□ 0.8
SHMT2-202ENST00000414700 KDM3BQ7LBC6 1761 aa20.06■□□□□ 0.8
SHMT2-202ENST00000414700 KCNQ3O43525 872 aa20.05■□□□□ 0.8
SHMT2-202ENST00000414700 HSP90AB1P08238 724 aaKnown RBP20.05■□□□□ 0.8
SHMT2-202ENST00000414700 THSD7AQ9UPZ6 1657 aa20.05■□□□□ 0.8
SHMT2-202ENST00000414700 A0A0G2JS52 829 aa20.05■□□□□ 0.8
SHMT2-202ENST00000414700 MRC1P22897 1456 aa20.05■□□□□ 0.8
SHMT2-202ENST00000414700 BTBD11A6QL63 1104 aa20.04■□□□□ 0.8
SHMT2-202ENST00000414700 MARCH10Q8NA82 808 aaPredicted RBP20.04■□□□□ 0.8
SHMT2-202ENST00000414700 BCAR3O75815 825 aa20.02■□□□□ 0.8
SHMT2-202ENST00000414700 SLC39A6Q13433 755 aa20.02■□□□□ 0.8
SHMT2-202ENST00000414700 BCL2L13Q9BXK5 485 aa20.02■□□□□ 0.8
SHMT2-202ENST00000414700 ITGB4P16144 1822 aa20.02■□□□□ 0.8
SHMT2-202ENST00000414700 VAMP4O75379 141 aa20.01■□□□□ 0.79
SHMT2-202ENST00000414700 CABP4P57796 275 aa20.01■□□□□ 0.79
SHMT2-202ENST00000414700 TWISTNBQ3B726 338 aaPredicted RBP20.01■□□□□ 0.79
SHMT2-202ENST00000414700 RARSP54136 660 aaKnown RBP20■□□□□ 0.79
SHMT2-202ENST00000414700 BABAM1Q9NWV8 329 aa20■□□□□ 0.79
SHMT2-202ENST00000414700 DOT1LQ8TEK3 1739 aa20■□□□□ 0.79
SHMT2-202ENST00000414700 ERVV-2B6SEH9 535 aa19.99■□□□□ 0.79
SHMT2-202ENST00000414700 PLIN1O60240 522 aa19.98■□□□□ 0.79
SHMT2-202ENST00000414700 ONECUT3O60422 494 aaPredicted RBP19.98■□□□□ 0.79
SHMT2-202ENST00000414700 PRKCSHP14314 528 aaPredicted RBP19.98■□□□□ 0.79
SHMT2-202ENST00000414700 IRX6P78412 446 aaPredicted RBP19.98■□□□□ 0.79
SHMT2-202ENST00000414700 RGS17Q9UGC6 210 aaPredicted RBP19.98■□□□□ 0.79
SHMT2-202ENST00000414700 RNF123Q5XPI4 1314 aa19.98■□□□□ 0.79
SHMT2-202ENST00000414700 TCERG1O14776 1098 aaKnown RBP19.98■□□□□ 0.79
SHMT2-202ENST00000414700 EIF4A1P60842 406 aaKnown RBP19.98■□□□□ 0.79
SHMT2-202ENST00000414700 FAM182BQ5T319 152 aa19.98■□□□□ 0.79
SHMT2-202ENST00000414700 CT47B1P0C2W7 299 aaPredicted RBP19.97■□□□□ 0.79
SHMT2-202ENST00000414700 ZNF772Q68DY9 489 aaPredicted RBP19.97■□□□□ 0.79
SHMT2-202ENST00000414700 ZNF790Q6PG37 636 aa19.97■□□□□ 0.79
SHMT2-202ENST00000414700 SEPT12Q8IYM1 358 aa19.97■□□□□ 0.79
SHMT2-202ENST00000414700 SSH1Q8WYL5 1049 aa19.97■□□□□ 0.79
SHMT2-202ENST00000414700 RRP1P56182 461 aaKnown RBP19.96■□□□□ 0.79
SHMT2-202ENST00000414700 PIGBQ92521 554 aa19.95■□□□□ 0.78
SHMT2-202ENST00000414700 SYTL4Q96C24 671 aaPredicted RBP19.95■□□□□ 0.78
SHMT2-202ENST00000414700 ACSBG1Q96GR2 724 aa19.95■□□□□ 0.78
SHMT2-202ENST00000414700 BRWD3Q6RI45 1802 aa19.95■□□□□ 0.78
SHMT2-202ENST00000414700 TMOD3Q9NYL9 352 aa19.95■□□□□ 0.78
SHMT2-202ENST00000414700 PRAMEF22A3QJZ6 481 aa19.94■□□□□ 0.78
SHMT2-202ENST00000414700 PRIM1P49642 420 aaKnown RBP19.94■□□□□ 0.78
SHMT2-202ENST00000414700 PAPPAQ13219 1627 aa19.94■□□□□ 0.78
SHMT2-202ENST00000414700 ZNF496Q96IT1 587 aaPredicted RBP19.93■□□□□ 0.78
SHMT2-202ENST00000414700 SMC4Q9NTJ3 1288 aa19.93■□□□□ 0.78
SHMT2-202ENST00000414700 HEG1Q9ULI3 1381 aa19.93■□□□□ 0.78
SHMT2-202ENST00000414700 BCL9O00512 1426 aa19.93■□□□□ 0.78
SHMT2-202ENST00000414700 UBR2Q8IWV8 1755 aa19.92■□□□□ 0.78
SHMT2-202ENST00000414700 NECTIN2Q92692 538 aa19.92■□□□□ 0.78
SHMT2-202ENST00000414700 C5P01031 1676 aa19.92■□□□□ 0.78
SHMT2-202ENST00000414700 KCNQ2O43526 872 aa19.92■□□□□ 0.78
SHMT2-202ENST00000414700 RBM6P78332 1123 aaKnown RBP19.92■□□□□ 0.78
SHMT2-202ENST00000414700 ASAP1Q9ULH1 1129 aa19.92■□□□□ 0.78
SHMT2-202ENST00000414700 TTC5Q8N0Z6 440 aa19.91■□□□□ 0.78
SHMT2-202ENST00000414700 GIGYF1O75420 1035 aaPredicted RBP19.9■□□□□ 0.78
SHMT2-202ENST00000414700 POTEAQ6S8J7 498 aa19.9■□□□□ 0.78
SHMT2-202ENST00000414700 ILDR1Q86SU0 546 aaPredicted RBP19.9■□□□□ 0.78
SHMT2-202ENST00000414700 FRAT1Q92837 279 aaPredicted RBP19.9■□□□□ 0.78
SHMT2-202ENST00000414700 ALDH1L2Q3SY69 923 aa19.9■□□□□ 0.78
SHMT2-202ENST00000414700 C20orf194Q5TEA3 1177 aa19.9■□□□□ 0.78
SHMT2-202ENST00000414700 ERICH6BQ5W0A0 696 aa19.9■□□□□ 0.78
SHMT2-202ENST00000414700 PTF1AQ7RTS3 328 aa19.9■□□□□ 0.78
SHMT2-202ENST00000414700 ZNF428Q96B54 188 aa19.9■□□□□ 0.78
SHMT2-202ENST00000414700 KCPQ6ZWJ8 1503 aa19.89■□□□□ 0.78
SHMT2-202ENST00000414700 PTCD1O75127 700 aaKnown RBP19.89■□□□□ 0.77
SHMT2-202ENST00000414700 ATG3Q9NT62 314 aa19.89■□□□□ 0.77
SHMT2-202ENST00000414700 TNNQ9UQP3 1299 aa19.89■□□□□ 0.77
SHMT2-202ENST00000414700 EIF2S2P20042 333 aaKnown RBP19.88■□□□□ 0.77
SHMT2-202ENST00000414700 DEKP35659 375 aaKnown RBP19.88■□□□□ 0.77
SHMT2-202ENST00000414700 MRPL50Q8N5N7 158 aaKnown RBP19.88■□□□□ 0.77
SHMT2-202ENST00000414700 SBF2Q86WG5 1849 aa19.87■□□□□ 0.77
SHMT2-202ENST00000414700 HDGFL1Q5TGJ6 251 aa19.86■□□□□ 0.77
SHMT2-202ENST00000414700 FMNL2Q96PY5 1086 aa19.86■□□□□ 0.77
SHMT2-202ENST00000414700 RXRBP28702 533 aa19.86■□□□□ 0.77
SHMT2-202ENST00000414700 NOB1Q9ULX3 412 aaKnown RBP19.86■□□□□ 0.77
SHMT2-202ENST00000414700 SLC4A2P04920 1241 aa19.85■□□□□ 0.77
SHMT2-202ENST00000414700 HOXB7P09629 217 aa19.85■□□□□ 0.77
SHMT2-202ENST00000414700 USP16Q9Y5T5 823 aa19.85■□□□□ 0.77
SHMT2-202ENST00000414700 CANXP27824 592 aaKnown RBP19.84■□□□□ 0.77
SHMT2-202ENST00000414700 KRT27Q7Z3Y8 459 aa19.84■□□□□ 0.77
SHMT2-202ENST00000414700 SOS1Q07889 1333 aaPredicted RBP19.84■□□□□ 0.77
SHMT2-202ENST00000414700 RGS12O14924 1447 aa19.84■□□□□ 0.77
SHMT2-202ENST00000414700 ANXA1P04083 346 aa19.83■□□□□ 0.77
SHMT2-202ENST00000414700 BRPF1P55201 1214 aaPredicted RBP19.83■□□□□ 0.77
SHMT2-202ENST00000414700 CCDC30Q5VVM6 783 aa19.83■□□□□ 0.77
SHMT2-202ENST00000414700 G2E3Q7L622 706 aa19.83■□□□□ 0.77
SHMT2-202ENST00000414700 CLUAP1Q96AJ1 413 aa19.83■□□□□ 0.77
SHMT2-202ENST00000414700 CACNA1FO60840 1977 aa19.83■□□□□ 0.77
SHMT2-202ENST00000414700 SNRPA1P09661 255 aaKnown RBP19.83■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms