RNA–Protein interactions for RNA: ENST00000414057.6

SCAMP4-204, Transcript of secretory carrier membrane protein 4, humanhuman

TSL 1 (best)

Gene SCAMP4, Length 1,477 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-204ENST00000414057 KDRP35968 1356 aa22.68■■□□□ 1.22
SCAMP4-204ENST00000414057 NPC1L1Q9UHC9 1359 aa22.68■■□□□ 1.22
SCAMP4-204ENST00000414057 ATP6V1AP38606 617 aa22.67■■□□□ 1.22
SCAMP4-204ENST00000414057 RALBP1Q15311 655 aa22.67■■□□□ 1.22
SCAMP4-204ENST00000414057 ATG3Q9NT62 314 aa22.67■■□□□ 1.22
SCAMP4-204ENST00000414057 CABP4P57796 275 aa22.66■■□□□ 1.22
SCAMP4-204ENST00000414057 TUBGCP6Q96RT7 1819 aa22.65■■□□□ 1.22
SCAMP4-204ENST00000414057 SSFA2P28290 1259 aa22.65■■□□□ 1.22
SCAMP4-204ENST00000414057 C4BP0C0L5 1744 aa22.64■■□□□ 1.22
SCAMP4-204ENST00000414057 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.63■■□□□ 1.21
SCAMP4-204ENST00000414057 DIAPH1O60610 1272 aaKnown RBP22.63■■□□□ 1.21
SCAMP4-204ENST00000414057 COL24A1Q17RW2 1714 aa22.63■■□□□ 1.21
SCAMP4-204ENST00000414057 LINC00116Q8NCU8 138 aa22.63■■□□□ 1.21
SCAMP4-204ENST00000414057 TAF1LQ8IZX4 1826 aa22.62■■□□□ 1.21
SCAMP4-204ENST00000414057 PHF14O94880 888 aa22.61■■□□□ 1.21
SCAMP4-204ENST00000414057 MSL1Q68DK7 614 aa22.61■■□□□ 1.21
SCAMP4-204ENST00000414057 RBM42Q9BTD8 480 aaKnown RBP22.61■■□□□ 1.21
SCAMP4-204ENST00000414057 KDM6AO15550 1401 aaPredicted RBP22.61■■□□□ 1.21
SCAMP4-204ENST00000414057 ITPK1Q13572 414 aa22.6■■□□□ 1.21
SCAMP4-204ENST00000414057 GPR162Q16538 588 aa22.6■■□□□ 1.21
SCAMP4-204ENST00000414057 AKAP4Q5JQC9 854 aa22.6■■□□□ 1.21
SCAMP4-204ENST00000414057 GNPATO15228 680 aa22.6■■□□□ 1.21
SCAMP4-204ENST00000414057 HMOX1P09601 288 aa22.58■■□□□ 1.2
SCAMP4-204ENST00000414057 NFATC2IPQ8NCF5 419 aa22.58■■□□□ 1.2
SCAMP4-204ENST00000414057 RTCBQ9Y3I0 505 aaKnown RBP22.58■■□□□ 1.2
SCAMP4-204ENST00000414057 MYBBP1AQ9BQG0 1328 aaKnown RBP22.57■■□□□ 1.2
SCAMP4-204ENST00000414057 CD2APQ9Y5K6 639 aa22.57■■□□□ 1.2
SCAMP4-204ENST00000414057 CNGB1Q14028 1251 aaPredicted RBP22.56■■□□□ 1.2
SCAMP4-204ENST00000414057 RC3H1Q5TC82 1133 aaKnown RBP22.56■■□□□ 1.2
SCAMP4-204ENST00000414057 PELP1Q8IZL8 1130 aaKnown RBP22.55■■□□□ 1.2
SCAMP4-204ENST00000414057 TRAPPC3LQ5T215 181 aa22.54■■□□□ 1.2
SCAMP4-204ENST00000414057 AMIGO3Q86WK7 504 aa22.54■■□□□ 1.2
SCAMP4-204ENST00000414057 ADRA2BP18089 450 aa22.54■■□□□ 1.2
SCAMP4-204ENST00000414057 NLGN2Q8NFZ4 835 aa22.54■■□□□ 1.2
SCAMP4-204ENST00000414057 CFAP53Q96M91 514 aa22.54■■□□□ 1.2
SCAMP4-204ENST00000414057 CNTNAP4Q9C0A0 1308 aa22.53■■□□□ 1.2
SCAMP4-204ENST00000414057 PTCD1O75127 700 aaKnown RBP22.53■■□□□ 1.2
SCAMP4-204ENST00000414057 SLC4A9Q96Q91 983 aa22.53■■□□□ 1.2
SCAMP4-204ENST00000414057 UBR3Q6ZT12 1888 aa22.52■■□□□ 1.2
SCAMP4-204ENST00000414057 ZNF831Q5JPB2 1677 aa22.52■■□□□ 1.2
SCAMP4-204ENST00000414057 U2SURPO15042 1029 aaKnown RBP22.52■■□□□ 1.2
SCAMP4-204ENST00000414057 SLC52A2Q9HAB3 445 aa22.52■■□□□ 1.2
SCAMP4-204ENST00000414057 GRIN3BO60391 1043 aa22.51■■□□□ 1.19
SCAMP4-204ENST00000414057 RNMTO43148 476 aaKnown RBP22.5■■□□□ 1.19
SCAMP4-204ENST00000414057 RPS6KA4O75676 772 aa22.5■■□□□ 1.19
SCAMP4-204ENST00000414057 MTHFSDQ2M296 383 aaKnown RBP22.5■■□□□ 1.19
SCAMP4-204ENST00000414057 SMIM5Q71RC9 77 aa22.5■■□□□ 1.19
SCAMP4-204ENST00000414057 RFC4P35249 363 aa22.49■■□□□ 1.19
SCAMP4-204ENST00000414057 NLGN1Q8N2Q7 840 aa22.49■■□□□ 1.19
SCAMP4-204ENST00000414057 MRS2Q9HD23 443 aa22.49■■□□□ 1.19
SCAMP4-204ENST00000414057 GAS2L2Q8NHY3 880 aa22.48■■□□□ 1.19
SCAMP4-204ENST00000414057 LGR6Q9HBX8 967 aa22.48■■□□□ 1.19
SCAMP4-204ENST00000414057 NUDCQ9Y266 331 aa22.48■■□□□ 1.19
SCAMP4-204ENST00000414057 COL3A1P02461 1466 aaPredicted RBP22.47■■□□□ 1.19
SCAMP4-204ENST00000414057 ARHGEF1Q92888 912 aaKnown RBP22.47■■□□□ 1.19
SCAMP4-204ENST00000414057 UTRNP46939 3433 aa22.46■■□□□ 1.19
SCAMP4-204ENST00000414057 SCN11AQ9UI33 1791 aa22.45■■□□□ 1.18
SCAMP4-204ENST00000414057 CRKLP46109 303 aaKnown RBP22.45■■□□□ 1.18
SCAMP4-204ENST00000414057 MMP10P09238 476 aa22.44■■□□□ 1.18
SCAMP4-204ENST00000414057 GNAT3A8MTJ3 354 aa22.43■■□□□ 1.18
SCAMP4-204ENST00000414057 ZNF784Q8NCA9 323 aaPredicted RBP22.43■■□□□ 1.18
SCAMP4-204ENST00000414057 MRC1P22897 1456 aa22.43■■□□□ 1.18
SCAMP4-204ENST00000414057 COL5A3P25940 1745 aaPredicted RBP22.43■■□□□ 1.18
SCAMP4-204ENST00000414057 YBX3P16989 372 aaKnown RBP eCLIP22.41■■□□□ 1.183e-7■■□□□ 12
SCAMP4-204ENST00000414057 PPP2R1AP30153 589 aa22.41■■□□□ 1.18
SCAMP4-204ENST00000414057 YTHDC1Q96MU7 727 aaKnown RBP22.41■■□□□ 1.18
SCAMP4-204ENST00000414057 CHD4Q14839 1912 aa22.41■■□□□ 1.18
SCAMP4-204ENST00000414057 GYS1P13807 737 aa22.41■■□□□ 1.18
SCAMP4-204ENST00000414057 TEFQ10587 303 aa22.41■■□□□ 1.18
SCAMP4-204ENST00000414057 SLC39A6Q13433 755 aa22.41■■□□□ 1.18
SCAMP4-204ENST00000414057 TTC5Q8N0Z6 440 aa22.41■■□□□ 1.18
SCAMP4-204ENST00000414057 VSIG10Q8N0Z9 540 aa22.41■■□□□ 1.18
SCAMP4-204ENST00000414057 CENPBP07199 599 aaPredicted RBP22.4■■□□□ 1.18
SCAMP4-204ENST00000414057 CCDC184Q52MB2 194 aa22.4■■□□□ 1.18
SCAMP4-204ENST00000414057 DNAJC10Q8IXB1 793 aa22.4■■□□□ 1.18
SCAMP4-204ENST00000414057 CCDC87Q9NVE4 849 aa22.39■■□□□ 1.17
SCAMP4-204ENST00000414057 PARP3Q9Y6F1 533 aa22.39■■□□□ 1.17
SCAMP4-204ENST00000414057 CICQ96RK0 1608 aaPredicted RBP22.38■■□□□ 1.17
SCAMP4-204ENST00000414057 PRKAR2BP31323 418 aa22.38■■□□□ 1.17
SCAMP4-204ENST00000414057 U2AF1L5P0DN76 240 aaPredicted RBP22.37■■□□□ 1.17
SCAMP4-204ENST00000414057 TGFB2P61812 414 aa22.37■■□□□ 1.17
SCAMP4-204ENST00000414057 U2AF1Q01081 240 aaKnown RBP eCLIP22.37■■□□□ 1.17
SCAMP4-204ENST00000414057 INTS5Q6P9B9 1019 aaKnown RBP22.37■■□□□ 1.17
SCAMP4-204ENST00000414057 RSPH6AQ9H0K4 717 aa22.37■■□□□ 1.17
SCAMP4-204ENST00000414057 USP42Q9H9J4 1324 aaKnown RBP22.37■■□□□ 1.17
SCAMP4-204ENST00000414057 ADAMTS7Q9UKP4 1686 aa22.36■■□□□ 1.17
SCAMP4-204ENST00000414057 CYP19A1P11511 503 aaPredicted RBP22.36■■□□□ 1.17
SCAMP4-204ENST00000414057 ZPR1O75312 459 aa22.35■■□□□ 1.17
SCAMP4-204ENST00000414057 FCHSD2O94868 740 aa22.35■■□□□ 1.17
SCAMP4-204ENST00000414057 IL17REQ8NFR9 667 aa22.35■■□□□ 1.17
SCAMP4-204ENST00000414057 STARD3NLO95772 234 aa22.34■■□□□ 1.17
SCAMP4-204ENST00000414057 TEX13AQ9BXU3 409 aaPredicted RBP22.34■■□□□ 1.17
SCAMP4-204ENST00000414057 TJP1Q07157 1748 aa22.34■■□□□ 1.17
SCAMP4-204ENST00000414057 PNISRQ8TF01 805 aaKnown RBP22.34■■□□□ 1.17
SCAMP4-204ENST00000414057 GOLGB1Q14789 3259 aaKnown RBP22.33■■□□□ 1.17
SCAMP4-204ENST00000414057 NEFMP07197 916 aa22.33■■□□□ 1.16
SCAMP4-204ENST00000414057 ZNF790Q6PG37 636 aa22.33■■□□□ 1.16
SCAMP4-204ENST00000414057 RTF1Q92541 710 aaKnown RBP22.33■■□□□ 1.16
SCAMP4-204ENST00000414057 PHACTR3Q96KR7 559 aa22.33■■□□□ 1.16
SCAMP4-204ENST00000414057 MYH14Q7Z406 1995 aaKnown RBP22.33■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms