RNA–Protein interactions for RNA: ENST00000413374.1

NCKIPSD-202, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 3

Gene NCKIPSD, Length 725 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-202ENST00000413374 PKD1L3Q7Z443 1732 aa13.67□□□□□ -0.22
NCKIPSD-202ENST00000413374 KDM6AO15550 1401 aaPredicted RBP13.67□□□□□ -0.22
NCKIPSD-202ENST00000413374 POLD1P28340 1107 aa13.67□□□□□ -0.22
NCKIPSD-202ENST00000413374 SLC4A9Q96Q91 983 aa13.67□□□□□ -0.22
NCKIPSD-202ENST00000413374 SYT17Q9BSW7 474 aa13.67□□□□□ -0.22
NCKIPSD-202ENST00000413374 PAPPAQ13219 1627 aa13.67□□□□□ -0.22
NCKIPSD-202ENST00000413374 RNMTO43148 476 aaKnown RBP13.66□□□□□ -0.22
NCKIPSD-202ENST00000413374 U2AF1L5P0DN76 240 aaPredicted RBP13.66□□□□□ -0.22
NCKIPSD-202ENST00000413374 U2AF1Q01081 240 aaKnown RBP eCLIP13.66□□□□□ -0.22
NCKIPSD-202ENST00000413374 TOGARAM1Q9Y4F4 1720 aa13.66□□□□□ -0.22
NCKIPSD-202ENST00000413374 CASZ1Q86V15 1759 aa13.66□□□□□ -0.22
NCKIPSD-202ENST00000413374 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.65□□□□□ -0.22
NCKIPSD-202ENST00000413374 DCAF8L1A6NGE4 600 aa13.65□□□□□ -0.22
NCKIPSD-202ENST00000413374 GNPATO15228 680 aa13.65□□□□□ -0.22
NCKIPSD-202ENST00000413374 SLC39A6Q13433 755 aa13.65□□□□□ -0.22
NCKIPSD-202ENST00000413374 PHACTR3Q96KR7 559 aa13.65□□□□□ -0.22
NCKIPSD-202ENST00000413374 NUDCQ9Y266 331 aa13.65□□□□□ -0.22
NCKIPSD-202ENST00000413374 PLEKHG2Q9H7P9 1386 aa13.64□□□□□ -0.23
NCKIPSD-202ENST00000413374 HMGB2P26583 209 aaKnown RBP13.64□□□□□ -0.23
NCKIPSD-202ENST00000413374 PRKAR2BP31323 418 aa13.64□□□□□ -0.23
NCKIPSD-202ENST00000413374 FLAD1Q8NFF5 587 aa13.64□□□□□ -0.23
NCKIPSD-202ENST00000413374 SLC52A2Q9HAB3 445 aa13.64□□□□□ -0.23
NCKIPSD-202ENST00000413374 COL3A1P02461 1466 aaPredicted RBP13.62□□□□□ -0.23
NCKIPSD-202ENST00000413374 IL17REQ8NFR9 667 aa13.62□□□□□ -0.23
NCKIPSD-202ENST00000413374 RSPH6AQ9H0K4 717 aa13.62□□□□□ -0.23
NCKIPSD-202ENST00000413374 LY75O60449 1722 aa13.61□□□□□ -0.23
NCKIPSD-202ENST00000413374 GNAT3A8MTJ3 354 aa13.61□□□□□ -0.23
NCKIPSD-202ENST00000413374 SSFA2P28290 1259 aa13.61□□□□□ -0.23
NCKIPSD-202ENST00000413374 TRAPPC3LQ5T215 181 aa13.61□□□□□ -0.23
NCKIPSD-202ENST00000413374 PELP1Q8IZL8 1130 aaKnown RBP13.61□□□□□ -0.23
NCKIPSD-202ENST00000413374 GAS2L2Q8NHY3 880 aa13.61□□□□□ -0.23
NCKIPSD-202ENST00000413374 RTCBQ9Y3I0 505 aaKnown RBP13.61□□□□□ -0.23
NCKIPSD-202ENST00000413374 ITGB4P16144 1822 aa13.6□□□□□ -0.23
NCKIPSD-202ENST00000413374 ARHGEF1Q92888 912 aaKnown RBP13.6□□□□□ -0.23
NCKIPSD-202ENST00000413374 TEFQ10587 303 aa13.59□□□□□ -0.23
NCKIPSD-202ENST00000413374 DNAJC10Q8IXB1 793 aa13.59□□□□□ -0.23
NCKIPSD-202ENST00000413374 NLGN2Q8NFZ4 835 aa13.59□□□□□ -0.23
NCKIPSD-202ENST00000413374 RPS6KA4O75676 772 aa13.58□□□□□ -0.24
NCKIPSD-202ENST00000413374 FCHSD2O94868 740 aa13.58□□□□□ -0.24
NCKIPSD-202ENST00000413374 CRKLP46109 303 aaKnown RBP13.58□□□□□ -0.24
NCKIPSD-202ENST00000413374 RC3H1Q5TC82 1133 aaKnown RBP13.58□□□□□ -0.24
NCKIPSD-202ENST00000413374 MAP3K5Q99683 1374 aa13.58□□□□□ -0.24
NCKIPSD-202ENST00000413374 RFC4P35249 363 aa13.57□□□□□ -0.24
NCKIPSD-202ENST00000413374 DCTN1Q14203 1278 aa13.57□□□□□ -0.24
NCKIPSD-202ENST00000413374 GPR162Q16538 588 aa13.57□□□□□ -0.24
NCKIPSD-202ENST00000413374 MCM10Q7L590 875 aa13.57□□□□□ -0.24
NCKIPSD-202ENST00000413374 C4BP0C0L5 1744 aa13.56□□□□□ -0.24
NCKIPSD-202ENST00000413374 YY1P25490 414 aa13.56□□□□□ -0.24
NCKIPSD-202ENST00000413374 INTS5Q6P9B9 1019 aaKnown RBP13.56□□□□□ -0.24
NCKIPSD-202ENST00000413374 TTC5Q8N0Z6 440 aa13.56□□□□□ -0.24
NCKIPSD-202ENST00000413374 RTF1Q92541 710 aaKnown RBP13.56□□□□□ -0.24
NCKIPSD-202ENST00000413374 SRP68Q9UHB9 627 aaKnown RBP13.56□□□□□ -0.24
NCKIPSD-202ENST00000413374 WWC3Q9ULE0 1092 aa13.56□□□□□ -0.24
NCKIPSD-202ENST00000413374 CNTNAP4Q9C0A0 1308 aa13.56□□□□□ -0.24
NCKIPSD-202ENST00000413374 C5P01031 1676 aa13.56□□□□□ -0.24
NCKIPSD-202ENST00000413374 KCNQ3O43525 872 aa13.55□□□□□ -0.24
NCKIPSD-202ENST00000413374 RALBP1Q15311 655 aa13.55□□□□□ -0.24
NCKIPSD-202ENST00000413374 BTBD11A6QL63 1104 aa13.54□□□□□ -0.24
NCKIPSD-202ENST00000413374 MMP10P09238 476 aa13.54□□□□□ -0.24
NCKIPSD-202ENST00000413374 CYP19A1P11511 503 aaPredicted RBP13.54□□□□□ -0.24
NCKIPSD-202ENST00000413374 CANXP27824 592 aaKnown RBP13.54□□□□□ -0.24
NCKIPSD-202ENST00000413374 TUBGCP6Q96RT7 1819 aa13.53□□□□□ -0.24
NCKIPSD-202ENST00000413374 NEFMP07197 916 aa13.53□□□□□ -0.24
NCKIPSD-202ENST00000413374 GYS1P13807 737 aa13.53□□□□□ -0.24
NCKIPSD-202ENST00000413374 ZNF790Q6PG37 636 aa13.53□□□□□ -0.24
NCKIPSD-202ENST00000413374 NLGN1Q8N2Q7 840 aa13.53□□□□□ -0.24
NCKIPSD-202ENST00000413374 ZNF496Q96IT1 587 aaPredicted RBP13.53□□□□□ -0.24
NCKIPSD-202ENST00000413374 CCDC87Q9NVE4 849 aa13.53□□□□□ -0.24
NCKIPSD-202ENST00000413374 ADRA2BP18089 450 aa13.52□□□□□ -0.25
NCKIPSD-202ENST00000413374 ZEB1P37275 1124 aaPredicted RBP13.52□□□□□ -0.25
NCKIPSD-202ENST00000413374 MIS18AQ9NYP9 233 aa13.52□□□□□ -0.25
NCKIPSD-202ENST00000413374 ZBTB1Q9Y2K1 713 aa13.52□□□□□ -0.25
NCKIPSD-202ENST00000413374 PLEKHF1Q96S99 279 aa13.51□□□□□ -0.25
NCKIPSD-202ENST00000413374 ZNF330Q9Y3S2 320 aaPredicted RBP13.51□□□□□ -0.25
NCKIPSD-202ENST00000413374 CD2APQ9Y5K6 639 aa13.51□□□□□ -0.25
NCKIPSD-202ENST00000413374 TAF1LQ8IZX4 1826 aa13.5□□□□□ -0.25
NCKIPSD-202ENST00000413374 ZPR1O75312 459 aa13.5□□□□□ -0.25
NCKIPSD-202ENST00000413374 YBX3P16989 372 aaKnown RBP eCLIP13.5□□□□□ -0.25
NCKIPSD-202ENST00000413374 FKBP8Q14318 412 aa13.5□□□□□ -0.25
NCKIPSD-202ENST00000413374 USPL1Q5W0Q7 1092 aa13.5□□□□□ -0.25
NCKIPSD-202ENST00000413374 VSIG10Q8N0Z9 540 aa13.5□□□□□ -0.25
NCKIPSD-202ENST00000413374 QSER1Q2KHR3 1735 aa13.5□□□□□ -0.25
NCKIPSD-202ENST00000413374 MYBBP1AQ9BQG0 1328 aaKnown RBP13.49□□□□□ -0.25
NCKIPSD-202ENST00000413374 PRAMEF22A3QJZ6 481 aa13.49□□□□□ -0.25
NCKIPSD-202ENST00000413374 STARD3NLO95772 234 aa13.49□□□□□ -0.25
NCKIPSD-202ENST00000413374 FMNL2Q96PY5 1086 aa13.49□□□□□ -0.25
NCKIPSD-202ENST00000413374 THUMPD2Q9BTF0 503 aaKnown RBP13.49□□□□□ -0.25
NCKIPSD-202ENST00000413374 PARP3Q9Y6F1 533 aa13.49□□□□□ -0.25
NCKIPSD-202ENST00000413374 MRC1P22897 1456 aa13.48□□□□□ -0.25
NCKIPSD-202ENST00000413374 CEMIPQ8WUJ3 1361 aa13.48□□□□□ -0.25
NCKIPSD-202ENST00000413374 SOS1Q07889 1333 aaPredicted RBP13.48□□□□□ -0.25
NCKIPSD-202ENST00000413374 USP42Q9H9J4 1324 aaKnown RBP13.48□□□□□ -0.25
NCKIPSD-202ENST00000413374 MAPK8IP3Q9UPT6 1336 aa13.48□□□□□ -0.25
NCKIPSD-202ENST00000413374 HTATSF1O43719 755 aaKnown RBP13.48□□□□□ -0.25
NCKIPSD-202ENST00000413374 A1BGP04217 495 aa13.48□□□□□ -0.25
NCKIPSD-202ENST00000413374 PIP4K2AP48426 406 aaPredicted RBP13.48□□□□□ -0.25
NCKIPSD-202ENST00000413374 TAF7Q15545 349 aaPredicted RBP13.48□□□□□ -0.25
NCKIPSD-202ENST00000413374 NFE2L2Q16236 605 aa13.48□□□□□ -0.25
NCKIPSD-202ENST00000413374 CCDC146Q8IYE0 955 aa13.48□□□□□ -0.25
NCKIPSD-202ENST00000413374 PNNQ9H307 717 aaKnown RBP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms