RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 RAPGEF3O95398 923 aa7.03□□□□□ -1.28
CCDC88A-203ENST00000412148 CCT4P50991 539 aaKnown RBP7.03□□□□□ -1.28
CCDC88A-203ENST00000412148 OSCARQ8IYS5 282 aa7.03□□□□□ -1.28
CCDC88A-203ENST00000412148 COG3Q96JB2 828 aa7.03□□□□□ -1.28
CCDC88A-203ENST00000412148 STK26Q9P289 416 aa7.03□□□□□ -1.28
CCDC88A-203ENST00000412148 LMO7Q8WWI1 1683 aa7.03□□□□□ -1.28
CCDC88A-203ENST00000412148 USP6P35125 1406 aa7.03□□□□□ -1.28
CCDC88A-203ENST00000412148 LMTK3Q96Q04 1460 aa7.03□□□□□ -1.28
CCDC88A-203ENST00000412148 PLEKHG3A1L390 1219 aa7.03□□□□□ -1.28
CCDC88A-203ENST00000412148 SDSP20132 328 aa7.03□□□□□ -1.28
CCDC88A-203ENST00000412148 HSP90AA2PQ14568 343 aaPredicted RBP7.03□□□□□ -1.28
CCDC88A-203ENST00000412148 CSPP1Q1MSJ5 1256 aa7.03□□□□□ -1.28
CCDC88A-203ENST00000412148 LRSAM1Q6UWE0 723 aa7.03□□□□□ -1.28
CCDC88A-203ENST00000412148 MTERF4Q7Z6M4 381 aaKnown RBP7.03□□□□□ -1.28
CCDC88A-203ENST00000412148 SRCIN1Q9C0H9 1055 aa7.03□□□□□ -1.28
CCDC88A-203ENST00000412148 STAP2Q9UGK3 403 aa7.03□□□□□ -1.28
CCDC88A-203ENST00000412148 TMEM87AQ8NBN3 555 aa7.02□□□□□ -1.28
CCDC88A-203ENST00000412148 BBXQ8WY36 941 aaPredicted RBP7.02□□□□□ -1.28
CCDC88A-203ENST00000412148 EMILIN1Q9Y6C2 1016 aa7.02□□□□□ -1.28
CCDC88A-203ENST00000412148 TCHHQ07283 1943 aa7.02□□□□□ -1.29
CCDC88A-203ENST00000412148 RBM42Q9BTD8 480 aaKnown RBP7.02□□□□□ -1.29
CCDC88A-203ENST00000412148 NWD1Q149M9 1564 aa7.02□□□□□ -1.29
CCDC88A-203ENST00000412148 BRD1O95696 1058 aa7.02□□□□□ -1.29
CCDC88A-203ENST00000412148 HDGFP51858 240 aaKnown RBP7.02□□□□□ -1.29
CCDC88A-203ENST00000412148 UVSSAQ2YD98 709 aa7.02□□□□□ -1.29
CCDC88A-203ENST00000412148 ZDHHC9Q9Y397 364 aa7.02□□□□□ -1.29
CCDC88A-203ENST00000412148 TTC21AQ8NDW8 1320 aa7.02□□□□□ -1.29
CCDC88A-203ENST00000412148 RGPD8O14715 1765 aaPredicted RBP7.01□□□□□ -1.29
CCDC88A-203ENST00000412148 METP08581 1390 aa7.01□□□□□ -1.29
CCDC88A-203ENST00000412148 SAFB2Q14151 953 aaKnown RBP eCLIP7.01□□□□□ -1.29
CCDC88A-203ENST00000412148 NUDT16Q96DE0 195 aaKnown RBP7.01□□□□□ -1.29
CCDC88A-203ENST00000412148 C1orf115Q9H7X2 142 aa7.01□□□□□ -1.29
CCDC88A-203ENST00000412148 KIF13AQ9H1H9 1805 aa7.01□□□□□ -1.29
CCDC88A-203ENST00000412148 CEP170BQ9Y4F5 1589 aaPredicted RBP7.01□□□□□ -1.29
CCDC88A-203ENST00000412148 SLIT1O75093 1534 aa7.01□□□□□ -1.29
CCDC88A-203ENST00000412148 ADAMTS13Q76LX8 1427 aa7.01□□□□□ -1.29
CCDC88A-203ENST00000412148 HMOX1P09601 288 aa7.01□□□□□ -1.29
CCDC88A-203ENST00000412148 MSNP26038 577 aaKnown RBP7.01□□□□□ -1.29
CCDC88A-203ENST00000412148 PDE1AP54750 535 aa7.01□□□□□ -1.29
CCDC88A-203ENST00000412148 NUTM2DQ5VT03 806 aaPredicted RBP7.01□□□□□ -1.29
CCDC88A-203ENST00000412148 FAM184AQ8NB25 1140 aa7.01□□□□□ -1.29
CCDC88A-203ENST00000412148 ZKSCAN5Q9Y2L8 839 aa7.01□□□□□ -1.29
CCDC88A-203ENST00000412148 SBNO1A3KN83 1393 aa7□□□□□ -1.29
CCDC88A-203ENST00000412148 PDIA4P13667 645 aaKnown RBP7□□□□□ -1.29
CCDC88A-203ENST00000412148 NME9Q86XW9 330 aa7□□□□□ -1.29
CCDC88A-203ENST00000412148 GPT2Q8TD30 523 aa7□□□□□ -1.29
CCDC88A-203ENST00000412148 CCDC39Q9UFE4 941 aa7□□□□□ -1.29
CCDC88A-203ENST00000412148 SIPA1L3O60292 1781 aaPredicted RBP7□□□□□ -1.29
CCDC88A-203ENST00000412148 ADAMTS7Q9UKP4 1686 aa7□□□□□ -1.29
CCDC88A-203ENST00000412148 PLEKHG1Q9ULL1 1385 aa7□□□□□ -1.29
CCDC88A-203ENST00000412148 LTN1O94822 1766 aa7□□□□□ -1.29
CCDC88A-203ENST00000412148 PHF14O94880 888 aa7□□□□□ -1.29
CCDC88A-203ENST00000412148 EIF4A2Q14240 407 aaKnown RBP7□□□□□ -1.29
CCDC88A-203ENST00000412148 SYAP1Q96A49 352 aaPredicted RBP7□□□□□ -1.29
CCDC88A-203ENST00000412148 THUMPD2Q9BTF0 503 aaKnown RBP7□□□□□ -1.29
CCDC88A-203ENST00000412148 CAMTA1Q9Y6Y1 1673 aa7□□□□□ -1.29
CCDC88A-203ENST00000412148 MYH15Q9Y2K3 1946 aa7□□□□□ -1.29
CCDC88A-203ENST00000412148 MCCP23508 829 aa6.99□□□□□ -1.29
CCDC88A-203ENST00000412148 MCTP1Q6DN14 999 aa6.99□□□□□ -1.29
CCDC88A-203ENST00000412148 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.99□□□□□ -1.29
CCDC88A-203ENST00000412148 ESYT1Q9BSJ8 1104 aa6.99□□□□□ -1.29
CCDC88A-203ENST00000412148 RBSNQ9H1K0 784 aa6.99□□□□□ -1.29
CCDC88A-203ENST00000412148 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.99□□□□□ -1.29
CCDC88A-203ENST00000412148 ARHGAP23Q9P227 1491 aa6.99□□□□□ -1.29
CCDC88A-203ENST00000412148 FLT4P35916 1363 aa6.99□□□□□ -1.29
CCDC88A-203ENST00000412148 LETM1O95202 739 aaPredicted RBP6.99□□□□□ -1.29
CCDC88A-203ENST00000412148 GNAI3P08754 354 aa6.99□□□□□ -1.29
CCDC88A-203ENST00000412148 KIAA1211Q6ZU35 1233 aa6.99□□□□□ -1.29
CCDC88A-203ENST00000412148 ANKARQ7Z5J8 1434 aa6.99□□□□□ -1.29
CCDC88A-203ENST00000412148 IGSF1Q8N6C5 1336 aa6.99□□□□□ -1.29
CCDC88A-203ENST00000412148 PRR36Q9H6K5 1346 aa6.99□□□□□ -1.29
CCDC88A-203ENST00000412148 USP42Q9H9J4 1324 aaKnown RBP6.99□□□□□ -1.29
CCDC88A-203ENST00000412148 DYNC1I1O14576 645 aa6.98□□□□□ -1.29
CCDC88A-203ENST00000412148 OVOS2A0A0G2JMS6 1433 aa6.98□□□□□ -1.29
CCDC88A-203ENST00000412148 TMEM2Q9UHN6 1383 aa6.98□□□□□ -1.29
CCDC88A-203ENST00000412148 GNAI2P04899 355 aa6.98□□□□□ -1.29
CCDC88A-203ENST00000412148 PRIM1P49642 420 aaKnown RBP6.98□□□□□ -1.29
CCDC88A-203ENST00000412148 FBXO31Q5XUX0 539 aaPredicted RBP6.98□□□□□ -1.29
CCDC88A-203ENST00000412148 CAVIN1Q6NZI2 390 aaKnown RBP6.98□□□□□ -1.29
CCDC88A-203ENST00000412148 WAPLQ7Z5K2 1190 aa6.98□□□□□ -1.29
CCDC88A-203ENST00000412148 TMX3Q96JJ7 454 aa6.98□□□□□ -1.29
CCDC88A-203ENST00000412148 MEIS3Q99687 375 aa6.98□□□□□ -1.29
CCDC88A-203ENST00000412148 RPAP1Q9BWH6 1393 aaPredicted RBP6.98□□□□□ -1.29
CCDC88A-203ENST00000412148 ATP8B2P98198 1209 aa6.98□□□□□ -1.29
CCDC88A-203ENST00000412148 CHMP4AQ9BY43 222 aa6.98□□□□□ -1.29
CCDC88A-203ENST00000412148 TMEM63CQ9P1W3 806 aa6.98□□□□□ -1.29
CCDC88A-203ENST00000412148 ADGRL3Q9HAR2 1447 aa6.97□□□□□ -1.29
CCDC88A-203ENST00000412148 RAB11FIP3O75154 756 aa6.97□□□□□ -1.29
CCDC88A-203ENST00000412148 C16orf71Q8IYS4 520 aaPredicted RBP6.97□□□□□ -1.29
CCDC88A-203ENST00000412148 MAP3K5Q99683 1374 aa6.97□□□□□ -1.29
CCDC88A-203ENST00000412148 WDR33Q9C0J8 1336 aaKnown RBP6.97□□□□□ -1.29
CCDC88A-203ENST00000412148 FAM83GA6ND36 823 aa6.97□□□□□ -1.29
CCDC88A-203ENST00000412148 CHMLP26374 656 aa6.97□□□□□ -1.29
CCDC88A-203ENST00000412148 ZGPATQ8N5A5 531 aaKnown RBP6.97□□□□□ -1.29
CCDC88A-203ENST00000412148 LRRCC1Q9C099 1032 aa6.97□□□□□ -1.29
CCDC88A-203ENST00000412148 HOXB7P09629 217 aa6.96□□□□□ -1.29
CCDC88A-203ENST00000412148 MX1P20591 662 aa6.96□□□□□ -1.29
CCDC88A-203ENST00000412148 HSPA4P34932 840 aa6.96□□□□□ -1.29
CCDC88A-203ENST00000412148 GTF2F1P35269 517 aaKnown RBP eCLIP6.96□□□□□ -1.29
CCDC88A-203ENST00000412148 PKP1Q13835 747 aa6.96□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms