RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 ZNF771Q7L3S4 317 aaPredicted RBP15.77■□□□□ 0.12
PTPRN-202ENST00000409251 PRDM4Q9UKN5 801 aa15.77■□□□□ 0.12
PTPRN-202ENST00000409251 LRRC7Q96NW7 1537 aa15.77■□□□□ 0.12
PTPRN-202ENST00000409251 NBPF6Q5VWK0 638 aa15.77■□□□□ 0.11
PTPRN-202ENST00000409251 NBPF4Q96M43 638 aa15.77■□□□□ 0.11
PTPRN-202ENST00000409251 ZKSCAN5Q9Y2L8 839 aa15.77■□□□□ 0.11
PTPRN-202ENST00000409251 FER1L4A9Z1Z3 1794 aa15.77■□□□□ 0.11
PTPRN-202ENST00000409251 A0A0G2JS52 829 aa15.76■□□□□ 0.11
PTPRN-202ENST00000409251 KRT28Q7Z3Y7 464 aa15.76■□□□□ 0.11
PTPRN-202ENST00000409251 CIZ1Q9ULV3 898 aaPredicted RBP15.76■□□□□ 0.11
PTPRN-202ENST00000409251 CFAP44Q96MT7 982 aa15.76■□□□□ 0.11
PTPRN-202ENST00000409251 NLRP2Q9NX02 1062 aa15.76■□□□□ 0.11
PTPRN-202ENST00000409251 NEK4P51957 841 aa15.76■□□□□ 0.11
PTPRN-202ENST00000409251 MAP7D2Q96T17 732 aa15.76■□□□□ 0.11
PTPRN-202ENST00000409251 COL3A1P02461 1466 aaPredicted RBP15.76■□□□□ 0.11
PTPRN-202ENST00000409251 G2E3Q7L622 706 aa15.75■□□□□ 0.11
PTPRN-202ENST00000409251 IQSEC2Q5JU85 1478 aa15.75■□□□□ 0.11
PTPRN-202ENST00000409251 CDK11BP21127 795 aaKnown RBP15.75■□□□□ 0.11
PTPRN-202ENST00000409251 TMEM63CQ9P1W3 806 aa15.75■□□□□ 0.11
PTPRN-202ENST00000409251 LGR6Q9HBX8 967 aa15.75■□□□□ 0.11
PTPRN-202ENST00000409251 CCDC39Q9UFE4 941 aa15.75■□□□□ 0.11
PTPRN-202ENST00000409251 PTMSP20962 102 aa15.74■□□□□ 0.11
PTPRN-202ENST00000409251 AAMPQ13685 434 aa15.74■□□□□ 0.11
PTPRN-202ENST00000409251 CSPP1Q1MSJ5 1256 aa15.74■□□□□ 0.11
PTPRN-202ENST00000409251 SASS6Q6UVJ0 657 aa15.74■□□□□ 0.11
PTPRN-202ENST00000409251 CGNQ9P2M7 1197 aaKnown RBP15.74■□□□□ 0.11
PTPRN-202ENST00000409251 NOL7Q9UMY1 257 aaKnown RBP15.74■□□□□ 0.11
PTPRN-202ENST00000409251 ST18O60284 1047 aa15.74■□□□□ 0.11
PTPRN-202ENST00000409251 NUCB2P80303 420 aa15.74■□□□□ 0.11
PTPRN-202ENST00000409251 LMOD3Q0VAK6 560 aa15.74■□□□□ 0.11
PTPRN-202ENST00000409251 OTUD7AQ8TE49 926 aaPredicted RBP15.74■□□□□ 0.11
PTPRN-202ENST00000409251 PPP1R9BQ96SB3 815 aa15.74■□□□□ 0.11
PTPRN-202ENST00000409251 AK9Q5TCS8 1911 aa15.74■□□□□ 0.11
PTPRN-202ENST00000409251 GCP02774 474 aa15.74■□□□□ 0.11
PTPRN-202ENST00000409251 TRERF1Q96PN7 1200 aa15.74■□□□□ 0.11
PTPRN-202ENST00000409251 DLC1Q96QB1 1528 aa15.74■□□□□ 0.11
PTPRN-202ENST00000409251 IFT57Q9NWB7 429 aa15.73■□□□□ 0.11
PTPRN-202ENST00000409251 CDC45O75419 566 aa15.73■□□□□ 0.11
PTPRN-202ENST00000409251 ZNF592Q92610 1267 aa15.73■□□□□ 0.11
PTPRN-202ENST00000409251 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.73■□□□□ 0.11
PTPRN-202ENST00000409251 NPHP1O15259 732 aa15.73■□□□□ 0.11
PTPRN-202ENST00000409251 GPT2Q8TD30 523 aa15.73■□□□□ 0.11
PTPRN-202ENST00000409251 UPF3BQ9BZI7 483 aaKnown RBP15.73■□□□□ 0.11
PTPRN-202ENST00000409251 AXIN2Q9Y2T1 843 aa15.73■□□□□ 0.11
PTPRN-202ENST00000409251 TECPR2O15040 1411 aa15.72■□□□□ 0.11
PTPRN-202ENST00000409251 KCNQ3O43525 872 aa15.72■□□□□ 0.11
PTPRN-202ENST00000409251 PLCD3Q8N3E9 789 aa15.72■□□□□ 0.11
PTPRN-202ENST00000409251 NUCB1Q02818 461 aa15.72■□□□□ 0.11
PTPRN-202ENST00000409251 DRC7Q8IY82 874 aa15.72■□□□□ 0.11
PTPRN-202ENST00000409251 MRPL50Q8N5N7 158 aaKnown RBP15.72■□□□□ 0.11
PTPRN-202ENST00000409251 PIP4K2AP48426 406 aaPredicted RBP15.72■□□□□ 0.11
PTPRN-202ENST00000409251 RBM25P49756 843 aaKnown RBP15.72■□□□□ 0.11
PTPRN-202ENST00000409251 LMBRD1Q9NUN5 540 aa15.72■□□□□ 0.11
PTPRN-202ENST00000409251 FKBP5Q13451 457 aaPredicted RBP15.71■□□□□ 0.11
PTPRN-202ENST00000409251 CASC1Q6TDU7 716 aa15.71■□□□□ 0.11
PTPRN-202ENST00000409251 SNX21Q969T3 373 aa15.71■□□□□ 0.11
PTPRN-202ENST00000409251 RILPL2Q969X0 211 aa15.71■□□□□ 0.11
PTPRN-202ENST00000409251 TRIM6-TRIM34B2RNG4 842 aa15.7■□□□□ 0.1
PTPRN-202ENST00000409251 DYNC1I1O14576 645 aa15.7■□□□□ 0.1
PTPRN-202ENST00000409251 ZBTB22O15209 634 aa15.7■□□□□ 0.1
PTPRN-202ENST00000409251 FLT4P35916 1363 aa15.7■□□□□ 0.1
PTPRN-202ENST00000409251 ZNF530Q6P9A1 599 aaPredicted RBP15.7■□□□□ 0.1
PTPRN-202ENST00000409251 KIF2CQ99661 725 aa15.7■□□□□ 0.1
PTPRN-202ENST00000409251 TTC21AQ8NDW8 1320 aa15.7■□□□□ 0.1
PTPRN-202ENST00000409251 CHAF1AQ13111 956 aaPredicted RBP15.7■□□□□ 0.1
PTPRN-202ENST00000409251 CDC42BPGQ6DT37 1551 aa15.7■□□□□ 0.1
PTPRN-202ENST00000409251 RGPD8O14715 1765 aaPredicted RBP15.7■□□□□ 0.1
PTPRN-202ENST00000409251 IL17REQ8NFR9 667 aa15.69■□□□□ 0.1
PTPRN-202ENST00000409251 ZBTB40Q9NUA8 1239 aa15.69■□□□□ 0.1
PTPRN-202ENST00000409251 TSPY26PQ9H489 355 aa15.69■□□□□ 0.1
PTPRN-202ENST00000409251 U2AF2P26368 475 aaKnown RBP eCLIP15.69■□□□□ 0.1
PTPRN-202ENST00000409251 HDAC1Q13547 482 aaPredicted RBP15.69■□□□□ 0.1
PTPRN-202ENST00000409251 SETD1AO15047 1707 aaKnown RBP15.69■□□□□ 0.1
PTPRN-202ENST00000409251 GNAT3A8MTJ3 354 aa15.68■□□□□ 0.1
PTPRN-202ENST00000409251 BMP2KLQ5H9B9 411 aa15.68■□□□□ 0.1
PTPRN-202ENST00000409251 NPHP4O75161 1426 aaPredicted RBP15.68■□□□□ 0.1
PTPRN-202ENST00000409251 AATKQ6ZMQ8 1374 aa15.68■□□□□ 0.1
PTPRN-202ENST00000409251 HCLS1P14317 486 aaPredicted RBP15.68■□□□□ 0.1
PTPRN-202ENST00000409251 ANKRD24Q8TF21 1146 aa15.68■□□□□ 0.1
PTPRN-202ENST00000409251 ANO2Q9NQ90 1003 aa15.68■□□□□ 0.1
PTPRN-202ENST00000409251 TAOK2Q9UL54 1235 aa15.68■□□□□ 0.1
PTPRN-202ENST00000409251 CEP170BQ9Y4F5 1589 aaPredicted RBP15.68■□□□□ 0.1
PTPRN-202ENST00000409251 FIBPO43427 364 aa15.68■□□□□ 0.1
PTPRN-202ENST00000409251 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.68■□□□□ 0.1
PTPRN-202ENST00000409251 TEFQ10587 303 aa15.67■□□□□ 0.1
PTPRN-202ENST00000409251 STRN4Q9NRL3 753 aa15.67■□□□□ 0.1
PTPRN-202ENST00000409251 AIMP1Q12904 312 aaKnown RBP15.67■□□□□ 0.1
PTPRN-202ENST00000409251 SLC39A6Q13433 755 aa15.67■□□□□ 0.1
PTPRN-202ENST00000409251 TMEM94Q12767 1356 aa15.67■□□□□ 0.1
PTPRN-202ENST00000409251 ERICH4A6NGS2 130 aa15.67■□□□□ 0.1
PTPRN-202ENST00000409251 DIP2AQ14689 1571 aa15.67■□□□□ 0.1
PTPRN-202ENST00000409251 RABEP1Q15276 862 aa15.67■□□□□ 0.1
PTPRN-202ENST00000409251 MEIS3Q99687 375 aa15.67■□□□□ 0.1
PTPRN-202ENST00000409251 CCDC94Q9BW85 323 aaPredicted RBP15.67■□□□□ 0.1
PTPRN-202ENST00000409251 KIF3AQ9Y496 699 aa15.67■□□□□ 0.1
PTPRN-202ENST00000409251 PDCL2Q8N4E4 241 aa15.66■□□□□ 0.1
PTPRN-202ENST00000409251 STK31Q9BXU1 1019 aa15.66■□□□□ 0.1
PTPRN-202ENST00000409251 C19orf44Q9H6X5 657 aa15.66■□□□□ 0.1
PTPRN-202ENST00000409251 OVOS2A0A0J9YW53 1432 aa15.66■□□□□ 0.1
PTPRN-202ENST00000409251 OVOS2Q6IE36 1432 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms