RNA–Protein interactions for RNA: ENST00000409161.5

SHANK2-203, Transcript of SH3 and multiple ankyrin repeat domains 2, humanhuman

TSL 1 (best) BASIC

Gene SHANK2, Length 9,208 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK2-203ENST00000409161 NBPF1Q3BBV0 1214 aa14.08□□□□□ -0.16
SHANK2-203ENST00000409161 CCDC178Q5BJE1 867 aa14.08□□□□□ -0.16
SHANK2-203ENST00000409161 SPECC1Q5M775 1068 aa14.08□□□□□ -0.16
SHANK2-203ENST00000409161 LRRC9Q6ZRR7 1453 aa14.08□□□□□ -0.16
SHANK2-203ENST00000409161 CKAP4Q07065 602 aaKnown RBP14.08□□□□□ -0.16
SHANK2-203ENST00000409161 SEPT6Q14141 434 aa14.08□□□□□ -0.16
SHANK2-203ENST00000409161 HFM1A2PYH4 1435 aa14.08□□□□□ -0.16
SHANK2-203ENST00000409161 MATR3P43243 847 aaKnown RBP eCLIP14.08□□□□□ -0.163e-9■■■□□ 18.4
SHANK2-203ENST00000409161 AKNAQ7Z591 1439 aa14.08□□□□□ -0.16
SHANK2-203ENST00000409161 NOB1Q9ULX3 412 aaKnown RBP14.08□□□□□ -0.16
SHANK2-203ENST00000409161 GOLIM4O00461 696 aa14.08□□□□□ -0.16
SHANK2-203ENST00000409161 PPP4R3AQ6IN85 833 aa14.08□□□□□ -0.16
SHANK2-203ENST00000409161 KRT222Q8N1A0 295 aa14.07□□□□□ -0.16
SHANK2-203ENST00000409161 NUP88Q99567 741 aaPredicted RBP14.07□□□□□ -0.16
SHANK2-203ENST00000409161 CASTP20810 708 aaKnown RBP14.07□□□□□ -0.16
SHANK2-203ENST00000409161 LARP1Q6PKG0 1096 aaKnown RBP14.07□□□□□ -0.16
SHANK2-203ENST00000409161 RAB11FIP3O75154 756 aa14.07□□□□□ -0.16
SHANK2-203ENST00000409161 TCP11L2Q8N4U5 519 aa14.07□□□□□ -0.16
SHANK2-203ENST00000409161 IKBKGQ9Y6K9 419 aa14.06□□□□□ -0.16
SHANK2-203ENST00000409161 KANK3Q6NY19 840 aa14.06□□□□□ -0.16
SHANK2-203ENST00000409161 DDX19AQ9NUU7 478 aaKnown RBP14.06□□□□□ -0.16
SHANK2-203ENST00000409161 CCDC172P0C7W6 258 aa14.06□□□□□ -0.16
SHANK2-203ENST00000409161 CBX1P83916 185 aa14.06□□□□□ -0.16
SHANK2-203ENST00000409161 GPATCH11Q8N954 259 aa14.06□□□□□ -0.16
SHANK2-203ENST00000409161 TNNT1P13805 278 aa14.06□□□□□ -0.16
SHANK2-203ENST00000409161 GTF2A1P52655 376 aaPredicted RBP14.06□□□□□ -0.16
SHANK2-203ENST00000409161 STK3Q13188 491 aa14.06□□□□□ -0.16
SHANK2-203ENST00000409161 TSNARE1Q96NA8 513 aa14.06□□□□□ -0.16
SHANK2-203ENST00000409161 RAI14Q9P0K7 980 aa14.06□□□□□ -0.16
SHANK2-203ENST00000409161 HSF2BPO75031 334 aa14.05□□□□□ -0.16
SHANK2-203ENST00000409161 TTC14Q96N46 770 aa14.05□□□□□ -0.16
SHANK2-203ENST00000409161 TDO2P48775 406 aa14.05□□□□□ -0.16
SHANK2-203ENST00000409161 MTMR7Q9Y216 660 aa14.05□□□□□ -0.16
SHANK2-203ENST00000409161 JAKMIP1Q96N16 626 aaKnown RBP14.05□□□□□ -0.16
SHANK2-203ENST00000409161 NKTRP30414 1462 aaKnown RBP14.05□□□□□ -0.16
SHANK2-203ENST00000409161 ADAMTS8Q9UP79 889 aa14.05□□□□□ -0.16
SHANK2-203ENST00000409161 UBE4AQ14139 1066 aa14.05□□□□□ -0.16
SHANK2-203ENST00000409161 URI1O94763 535 aaPredicted RBP14.05□□□□□ -0.16
SHANK2-203ENST00000409161 ZNF76P36508 570 aa14.05□□□□□ -0.16
SHANK2-203ENST00000409161 DAPK1P53355 1430 aa14.05□□□□□ -0.16
SHANK2-203ENST00000409161 UVSSAQ2YD98 709 aa14.05□□□□□ -0.16
SHANK2-203ENST00000409161 TMEM266Q2M3C6 531 aa14.05□□□□□ -0.16
SHANK2-203ENST00000409161 CCDC155Q8N6L0 562 aa14.05□□□□□ -0.16
SHANK2-203ENST00000409161 WDR66Q8TBY9 1149 aa14.05□□□□□ -0.16
SHANK2-203ENST00000409161 ANKRD50Q9ULJ7 1429 aa14.04□□□□□ -0.16
SHANK2-203ENST00000409161 NUP133Q8WUM0 1156 aa14.04□□□□□ -0.16
SHANK2-203ENST00000409161 SRRTQ9BXP5 876 aaKnown RBP14.04□□□□□ -0.16
SHANK2-203ENST00000409161 ARFGAP3Q9NP61 516 aa14.04□□□□□ -0.16
SHANK2-203ENST00000409161 ATF3P18847 181 aa14.04□□□□□ -0.16
SHANK2-203ENST00000409161 PPP4R3BQ5MIZ7 849 aa14.04□□□□□ -0.16
SHANK2-203ENST00000409161 MTHFSP49914 203 aa14.04□□□□□ -0.16
SHANK2-203ENST00000409161 MPHOSPH8Q99549 860 aa14.04□□□□□ -0.16
SHANK2-203ENST00000409161 HMGB1P1B2RPK0 211 aaPredicted RBP14.04□□□□□ -0.16
SHANK2-203ENST00000409161 SNW1Q13573 536 aaKnown RBP14.04□□□□□ -0.16
SHANK2-203ENST00000409161 HLTFQ14527 1009 aaKnown RBP eCLIP14.04□□□□□ -0.161e-6■■■□□ 17.8
SHANK2-203ENST00000409161 TTC12Q9H892 705 aaPredicted RBP14.04□□□□□ -0.16
SHANK2-203ENST00000409161 TTC21AQ8NDW8 1320 aa14.03□□□□□ -0.16
SHANK2-203ENST00000409161 TUBBP07437 444 aa14.03□□□□□ -0.16
SHANK2-203ENST00000409161 HDGFL1Q5TGJ6 251 aa14.03□□□□□ -0.16
SHANK2-203ENST00000409161 SSBP05455 408 aaKnown RBP eCLIP14.03□□□□□ -0.16
SHANK2-203ENST00000409161 MSL1Q68DK7 614 aa14.03□□□□□ -0.16
SHANK2-203ENST00000409161 RASAL2Q9UJF2 1139 aa14.03□□□□□ -0.16
SHANK2-203ENST00000409161 CTNNA2P26232 953 aa14.03□□□□□ -0.16
SHANK2-203ENST00000409161 AMPD3Q01432 767 aa14.03□□□□□ -0.16
SHANK2-203ENST00000409161 ATP2B2Q01814 1243 aa14.03□□□□□ -0.16
SHANK2-203ENST00000409161 BCCIPQ9P287 314 aaKnown RBP eCLIP14.03□□□□□ -0.167e-6■■■■□ 19.3
SHANK2-203ENST00000409161 PRPHP41219 470 aa14.03□□□□□ -0.16
SHANK2-203ENST00000409161 AACSQ86V21 672 aa14.03□□□□□ -0.16
SHANK2-203ENST00000409161 LRRC45Q96CN5 670 aa14.03□□□□□ -0.16
SHANK2-203ENST00000409161 HOMER2Q9NSB8 354 aa14.03□□□□□ -0.16
SHANK2-203ENST00000409161 A0A087WZG4 1122 aa14.02□□□□□ -0.16
SHANK2-203ENST00000409161 TDRD9Q8NDG6 1382 aaKnown RBP14.02□□□□□ -0.17
SHANK2-203ENST00000409161 C16orf45Q96MC5 204 aaPredicted RBP14.02□□□□□ -0.17
SHANK2-203ENST00000409161 LMAN1P49257 510 aa14.02□□□□□ -0.17
SHANK2-203ENST00000409161 STXBP4Q6ZWJ1 553 aa14.02□□□□□ -0.17
SHANK2-203ENST00000409161 IPO4Q8TEX9 1081 aaKnown RBP14.01□□□□□ -0.17
SHANK2-203ENST00000409161 EHMT1Q9H9B1 1298 aa14.01□□□□□ -0.17
SHANK2-203ENST00000409161 MPHOSPH10O00566 681 aaKnown RBP14.01□□□□□ -0.17
SHANK2-203ENST00000409161 OPA1O60313 960 aa14.01□□□□□ -0.17
SHANK2-203ENST00000409161 GTF2F1P35269 517 aaKnown RBP eCLIP14.01□□□□□ -0.177e-7■■■■■ 30.9
SHANK2-203ENST00000409161 CTAGE1Q96RT6 745 aa14.01□□□□□ -0.17
SHANK2-203ENST00000409161 GTPBP4Q9BZE4 634 aaKnown RBP14.01□□□□□ -0.17
SHANK2-203ENST00000409161 FBF1Q8TES7 1133 aa14.01□□□□□ -0.17
SHANK2-203ENST00000409161 PPP2R1AP30153 589 aa14.01□□□□□ -0.17
SHANK2-203ENST00000409161 CEP135Q66GS9 1140 aa14.01□□□□□ -0.17
SHANK2-203ENST00000409161 RPAP2Q8IXW5 612 aaPredicted RBP14.01□□□□□ -0.17
SHANK2-203ENST00000409161 NOL3O60936 208 aaKnown RBP14□□□□□ -0.17
SHANK2-203ENST00000409161 SLC4A2P04920 1241 aa14□□□□□ -0.17
SHANK2-203ENST00000409161 AKAP2Q9Y2D5 859 aa14□□□□□ -0.17
SHANK2-203ENST00000409161 GLRX3O76003 335 aaKnown RBP14□□□□□ -0.17
SHANK2-203ENST00000409161 SETSIPP0DME0 302 aa14□□□□□ -0.17
SHANK2-203ENST00000409161 LRRC27Q9C0I9 530 aa14□□□□□ -0.17
SHANK2-203ENST00000409161 C8orf76Q96K31 380 aa14□□□□□ -0.17
SHANK2-203ENST00000409161 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14□□□□□ -0.174e-6■□□□□ 8.1
SHANK2-203ENST00000409161 MAATS1Q7Z4T9 603 aa14□□□□□ -0.17
SHANK2-203ENST00000409161 NLRP2Q9NX02 1062 aa14□□□□□ -0.17
SHANK2-203ENST00000409161 CASKIN1Q8WXD9 1431 aa14□□□□□ -0.17
SHANK2-203ENST00000409161 ZWINTO95229 277 aa14□□□□□ -0.17
SHANK2-203ENST00000409161 CWC27Q6UX04 472 aaKnown RBP14□□□□□ -0.17
SHANK2-203ENST00000409161 PPP1R14CQ8TAE6 165 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms