RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 COL24A1Q17RW2 1714 aa16.78■□□□□ 0.28
SMARCB1-203ENST00000407082 HOXC9P31274 260 aa16.77■□□□□ 0.28
SMARCB1-203ENST00000407082 SALL2Q9Y467 1007 aaPredicted RBP16.77■□□□□ 0.28
SMARCB1-203ENST00000407082 LTN1O94822 1766 aa16.77■□□□□ 0.27
SMARCB1-203ENST00000407082 MAP2P11137 1827 aaKnown RBP16.76■□□□□ 0.27
SMARCB1-203ENST00000407082 NCBP3Q53F19 620 aaKnown RBP16.76■□□□□ 0.27
SMARCB1-203ENST00000407082 APLP1P51693 650 aa16.75■□□□□ 0.27
SMARCB1-203ENST00000407082 KIF24Q5T7B8 1368 aa16.75■□□□□ 0.27
SMARCB1-203ENST00000407082 KIF3CO14782 793 aa16.74■□□□□ 0.27
SMARCB1-203ENST00000407082 CAPN15O75808 1086 aa16.74■□□□□ 0.27
SMARCB1-203ENST00000407082 MTHFSP49914 203 aa16.74■□□□□ 0.27
SMARCB1-203ENST00000407082 HSP90AB2PQ58FF8 381 aa16.74■□□□□ 0.27
SMARCB1-203ENST00000407082 RTL1A6NKG5 1358 aa16.74■□□□□ 0.27
SMARCB1-203ENST00000407082 FLT4P35916 1363 aa16.74■□□□□ 0.27
SMARCB1-203ENST00000407082 IGSF1Q8N6C5 1336 aa16.73■□□□□ 0.27
SMARCB1-203ENST00000407082 FANCIQ9NVI1 1328 aa16.73■□□□□ 0.27
SMARCB1-203ENST00000407082 FLAD1Q8NFF5 587 aa16.73■□□□□ 0.27
SMARCB1-203ENST00000407082 ADCY9O60503 1353 aa16.73■□□□□ 0.27
SMARCB1-203ENST00000407082 DOT1LQ8TEK3 1739 aa16.73■□□□□ 0.27
SMARCB1-203ENST00000407082 PHF14O94880 888 aa16.72■□□□□ 0.27
SMARCB1-203ENST00000407082 ZNF521Q96K83 1311 aa16.71■□□□□ 0.27
SMARCB1-203ENST00000407082 LY75O60449 1722 aa16.71■□□□□ 0.27
SMARCB1-203ENST00000407082 E9PSI1 815 aa16.71■□□□□ 0.27
SMARCB1-203ENST00000407082 SMIM5Q71RC9 77 aa16.71■□□□□ 0.27
SMARCB1-203ENST00000407082 CDCA7LQ96GN5 454 aa16.7■□□□□ 0.26
SMARCB1-203ENST00000407082 AK7Q96M32 723 aa16.7■□□□□ 0.26
SMARCB1-203ENST00000407082 SLFN5Q08AF3 891 aa16.69■□□□□ 0.26
SMARCB1-203ENST00000407082 MPRIPQ6WCQ1 1025 aa16.69■□□□□ 0.26
SMARCB1-203ENST00000407082 USHBP1Q8N6Y0 703 aa16.69■□□□□ 0.26
SMARCB1-203ENST00000407082 HMGB2P26583 209 aaKnown RBP16.68■□□□□ 0.26
SMARCB1-203ENST00000407082 DUSP27Q5VZP5 1158 aa16.68■□□□□ 0.26
SMARCB1-203ENST00000407082 DNAJC5GQ8N7S2 189 aa16.68■□□□□ 0.26
SMARCB1-203ENST00000407082 RUNDC1Q96C34 613 aa16.68■□□□□ 0.26
SMARCB1-203ENST00000407082 PNNQ9H307 717 aaKnown RBP16.68■□□□□ 0.26
SMARCB1-203ENST00000407082 TOMM70O94826 608 aa16.67■□□□□ 0.26
SMARCB1-203ENST00000407082 EIF4A2Q14240 407 aaKnown RBP16.67■□□□□ 0.26
SMARCB1-203ENST00000407082 TRMT2AQ8IZ69 625 aaKnown RBP16.67■□□□□ 0.26
SMARCB1-203ENST00000407082 RAPGEF4Q8WZA2 1011 aa16.67■□□□□ 0.26
SMARCB1-203ENST00000407082 PALLDQ8WX93 1383 aa16.65■□□□□ 0.26
SMARCB1-203ENST00000407082 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.65■□□□□ 0.26
SMARCB1-203ENST00000407082 APAF1O14727 1248 aa16.65■□□□□ 0.26
SMARCB1-203ENST00000407082 TCERG1O14776 1098 aaKnown RBP16.65■□□□□ 0.26
SMARCB1-203ENST00000407082 NBPF6Q5VWK0 638 aa16.65■□□□□ 0.26
SMARCB1-203ENST00000407082 EXOC6Q8TAG9 804 aa16.65■□□□□ 0.26
SMARCB1-203ENST00000407082 NBPF4Q96M43 638 aa16.65■□□□□ 0.26
SMARCB1-203ENST00000407082 MEGF6O75095 1541 aa16.65■□□□□ 0.26
SMARCB1-203ENST00000407082 DIAPH1O60610 1272 aaKnown RBP16.64■□□□□ 0.25
SMARCB1-203ENST00000407082 TATP17735 454 aaPredicted RBP16.64■□□□□ 0.25
SMARCB1-203ENST00000407082 HTRA3P83110 453 aa16.64■□□□□ 0.25
SMARCB1-203ENST00000407082 COL13A1Q5TAT6 717 aaPredicted RBP16.64■□□□□ 0.25
SMARCB1-203ENST00000407082 ARHGAP27Q6ZUM4 889 aa16.64■□□□□ 0.25
SMARCB1-203ENST00000407082 AMIGO3Q86WK7 504 aa16.64■□□□□ 0.25
SMARCB1-203ENST00000407082 C5P01031 1676 aa16.63■□□□□ 0.25
SMARCB1-203ENST00000407082 IL13P35225 146 aa16.63■□□□□ 0.25
SMARCB1-203ENST00000407082 CCDC27Q2M243 656 aa16.63■□□□□ 0.25
SMARCB1-203ENST00000407082 WDR63Q8IWG1 891 aa16.63■□□□□ 0.25
SMARCB1-203ENST00000407082 C16orf71Q8IYS4 520 aaPredicted RBP16.63■□□□□ 0.25
SMARCB1-203ENST00000407082 NMRK2Q9NPI5 230 aa16.63■□□□□ 0.25
SMARCB1-203ENST00000407082 BCS1LQ9Y276 419 aa16.63■□□□□ 0.25
SMARCB1-203ENST00000407082 SMARCC1Q92922 1105 aaPredicted RBP16.62■□□□□ 0.25
SMARCB1-203ENST00000407082 EYA1Q99502 592 aa16.62■□□□□ 0.25
SMARCB1-203ENST00000407082 FAM208AQ9UK61 1670 aaKnown RBP16.62■□□□□ 0.25
SMARCB1-203ENST00000407082 RGPD2P0DJD1 1756 aa16.61■□□□□ 0.25
SMARCB1-203ENST00000407082 MS4A1P11836 297 aa16.61■□□□□ 0.25
SMARCB1-203ENST00000407082 CCDC146Q8IYE0 955 aa16.61■□□□□ 0.25
SMARCB1-203ENST00000407082 A0A0G2JLW4 131 aa16.6■□□□□ 0.25
SMARCB1-203ENST00000407082 AAMPQ13685 434 aa16.6■□□□□ 0.25
SMARCB1-203ENST00000407082 TNS4Q8IZW8 715 aa16.6■□□□□ 0.25
SMARCB1-203ENST00000407082 U2SURPO15042 1029 aaKnown RBP16.59■□□□□ 0.25
SMARCB1-203ENST00000407082 MMP10P09238 476 aa16.59■□□□□ 0.25
SMARCB1-203ENST00000407082 PCDH11XQ9BZA7 1347 aa16.59■□□□□ 0.25
SMARCB1-203ENST00000407082 PCDH11YQ9BZA8 1340 aa16.59■□□□□ 0.25
SMARCB1-203ENST00000407082 COL3A1P02461 1466 aaPredicted RBP16.59■□□□□ 0.25
SMARCB1-203ENST00000407082 GNPATO15228 680 aa16.58■□□□□ 0.24
SMARCB1-203ENST00000407082 KLRG1Q96E93 195 aa16.58■□□□□ 0.24
SMARCB1-203ENST00000407082 C4BP0C0L5 1744 aa16.57■□□□□ 0.24
SMARCB1-203ENST00000407082 SSFA2P28290 1259 aa16.57■□□□□ 0.24
SMARCB1-203ENST00000407082 ERICH6Q7L0X2 663 aa16.57■□□□□ 0.24
SMARCB1-203ENST00000407082 WWC1Q8IX03 1113 aa16.57■□□□□ 0.24
SMARCB1-203ENST00000407082 PIGBQ92521 554 aa16.57■□□□□ 0.24
SMARCB1-203ENST00000407082 MYH16Q9H6N6 1097 aa16.57■□□□□ 0.24
SMARCB1-203ENST00000407082 TAF1LQ8IZX4 1826 aa16.56■□□□□ 0.24
SMARCB1-203ENST00000407082 FCHSD2O94868 740 aa16.56■□□□□ 0.24
SMARCB1-203ENST00000407082 CT47B1P0C2W7 299 aaPredicted RBP16.56■□□□□ 0.24
SMARCB1-203ENST00000407082 SULT6B1Q6IMI4 303 aa16.56■□□□□ 0.24
SMARCB1-203ENST00000407082 LINC00116Q8NCU8 138 aa16.56■□□□□ 0.24
SMARCB1-203ENST00000407082 RBM46Q8TBY0 533 aaKnown RBP16.56■□□□□ 0.24
SMARCB1-203ENST00000407082 CRBNQ96SW2 442 aa16.56■□□□□ 0.24
SMARCB1-203ENST00000407082 ANP32EQ9BTT0 268 aa16.56■□□□□ 0.24
SMARCB1-203ENST00000407082 LOC102724428A0A0B4J2F2 783 aa16.55■□□□□ 0.24
SMARCB1-203ENST00000407082 CYP27B1O15528 508 aa16.55■□□□□ 0.24
SMARCB1-203ENST00000407082 HMOX1P09601 288 aa16.55■□□□□ 0.24
SMARCB1-203ENST00000407082 U2AF1L5P0DN76 240 aaPredicted RBP16.55■□□□□ 0.24
SMARCB1-203ENST00000407082 SIK1P57059 783 aa16.55■□□□□ 0.24
SMARCB1-203ENST00000407082 U2AF1Q01081 240 aaKnown RBP eCLIP16.55■□□□□ 0.24
SMARCB1-203ENST00000407082 PDE3AQ14432 1141 aa16.55■□□□□ 0.24
SMARCB1-203ENST00000407082 CENPQQ7L2Z9 268 aaPredicted RBP16.55■□□□□ 0.24
SMARCB1-203ENST00000407082 NEFMP07197 916 aa16.54■□□□□ 0.24
SMARCB1-203ENST00000407082 TGFB2P61812 414 aa16.54■□□□□ 0.24
SMARCB1-203ENST00000407082 C9orf131Q5VYM1 1079 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms