RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 PLEKHG2Q9H7P9 1386 aa39.11■■■■□ 3.85
HMGB1-205ENST00000399494 GIGYF1O75420 1035 aaPredicted RBP39.11■■■■□ 3.85
HMGB1-205ENST00000399494 IGSF1Q8N6C5 1336 aa39.11■■■■□ 3.85
HMGB1-205ENST00000399494 GNPATO15228 680 aa39.07■■■■□ 3.85
HMGB1-205ENST00000399494 ERVV-2B6SEH9 535 aa39.06■■■■□ 3.84
HMGB1-205ENST00000399494 DCAF5Q96JK2 942 aa39.03■■■■□ 3.84
HMGB1-205ENST00000399494 SLC4A9Q96Q91 983 aa39.03■■■■□ 3.84
HMGB1-205ENST00000399494 PLEKHO1Q53GL0 409 aaPredicted RBP39.02■■■■□ 3.84
HMGB1-205ENST00000399494 HSP90AB1P08238 724 aaKnown RBP39.01■■■■□ 3.84
HMGB1-205ENST00000399494 KDRP35968 1356 aa38.99■■■■□ 3.83
HMGB1-205ENST00000399494 AMOTQ4VCS5 1084 aa38.97■■■■□ 3.83
HMGB1-205ENST00000399494 MORC1Q86VD1 984 aa38.97■■■■□ 3.83
HMGB1-205ENST00000399494 RBM42Q9BTD8 480 aaKnown RBP38.97■■■■□ 3.83
HMGB1-205ENST00000399494 ATP10DQ9P241 1426 aa38.97■■■■□ 3.83
HMGB1-205ENST00000399494 TRAPPC3LQ5T215 181 aa38.96■■■■□ 3.83
HMGB1-205ENST00000399494 ZNF530Q6P9A1 599 aaPredicted RBP38.96■■■■□ 3.83
HMGB1-205ENST00000399494 RC3H1Q5TC82 1133 aaKnown RBP38.95■■■■□ 3.83
HMGB1-205ENST00000399494 RTCBQ9Y3I0 505 aaKnown RBP38.95■■■■□ 3.83
HMGB1-205ENST00000399494 WWC3Q9ULE0 1092 aa38.94■■■■□ 3.82
HMGB1-205ENST00000399494 MMP10P09238 476 aa38.93■■■■□ 3.82
HMGB1-205ENST00000399494 AEBP1Q8IUX7 1158 aa38.93■■■■□ 3.82
HMGB1-205ENST00000399494 KDM6AO15550 1401 aaPredicted RBP38.92■■■■□ 3.82
HMGB1-205ENST00000399494 CABP4P57796 275 aa38.92■■■■□ 3.82
HMGB1-205ENST00000399494 ZNF831Q5JPB2 1677 aa38.91■■■■□ 3.82
HMGB1-205ENST00000399494 ARHGEF1Q92888 912 aaKnown RBP38.9■■■■□ 3.82
HMGB1-205ENST00000399494 MTHFSP49914 203 aa38.89■■■■□ 3.82
HMGB1-205ENST00000399494 NLGN1Q8N2Q7 840 aa38.89■■■■□ 3.82
HMGB1-205ENST00000399494 ADCY9O60503 1353 aa38.89■■■■□ 3.82
HMGB1-205ENST00000399494 RPS6KA4O75676 772 aa38.87■■■■□ 3.81
HMGB1-205ENST00000399494 KNSTRNQ9Y448 316 aa38.87■■■■□ 3.81
HMGB1-205ENST00000399494 CNTNAP4Q9C0A0 1308 aa38.87■■■■□ 3.81
HMGB1-205ENST00000399494 ADRA2BP18089 450 aa38.86■■■■□ 3.81
HMGB1-205ENST00000399494 GPBP1L1Q9HC44 474 aaPredicted RBP38.86■■■■□ 3.81
HMGB1-205ENST00000399494 C1orf141Q5JVX7 400 aa38.85■■■■□ 3.81
HMGB1-205ENST00000399494 SULT6B1Q6IMI4 303 aa38.85■■■■□ 3.81
HMGB1-205ENST00000399494 IL13P35225 146 aa38.84■■■■□ 3.81
HMGB1-205ENST00000399494 NFATC2IPQ8NCF5 419 aa38.84■■■■□ 3.81
HMGB1-205ENST00000399494 COL5A3P25940 1745 aaPredicted RBP38.83■■■■□ 3.81
HMGB1-205ENST00000399494 GYS1P13807 737 aa38.82■■■■□ 3.8
HMGB1-205ENST00000399494 TGFB2P61812 414 aa38.82■■■■□ 3.8
HMGB1-205ENST00000399494 PTCD1O75127 700 aaKnown RBP38.81■■■■□ 3.8
HMGB1-205ENST00000399494 RFC4P35249 363 aa38.81■■■■□ 3.8
HMGB1-205ENST00000399494 ZNF526Q8TF50 670 aaPredicted RBP38.79■■■■□ 3.8
HMGB1-205ENST00000399494 KIF13BQ9NQT8 1826 aa38.79■■■■□ 3.8
HMGB1-205ENST00000399494 PXDNLA1KZ92 1463 aa38.79■■■■□ 3.8
HMGB1-205ENST00000399494 CICQ96RK0 1608 aaPredicted RBP38.78■■■■□ 3.8
HMGB1-205ENST00000399494 A0A0G2JLW4 131 aa38.77■■■■□ 3.8
HMGB1-205ENST00000399494 AMER1Q5JTC6 1135 aaPredicted RBP38.77■■■■□ 3.8
HMGB1-205ENST00000399494 MYH14Q7Z406 1995 aaKnown RBP38.77■■■■□ 3.8
HMGB1-205ENST00000399494 KIAA1551Q9HCM1 1747 aa38.75■■■■□ 3.79
HMGB1-205ENST00000399494 CRKLP46109 303 aaKnown RBP38.74■■■■□ 3.79
HMGB1-205ENST00000399494 CCDC87Q9NVE4 849 aa38.74■■■■□ 3.79
HMGB1-205ENST00000399494 C10orf71Q711Q0 1435 aa38.73■■■■□ 3.79
HMGB1-205ENST00000399494 PARP3Q9Y6F1 533 aa38.73■■■■□ 3.79
HMGB1-205ENST00000399494 N4BP2Q86UW6 1770 aaPredicted RBP38.72■■■■□ 3.79
HMGB1-205ENST00000399494 BCS1LQ9Y276 419 aa38.71■■■■□ 3.79
HMGB1-205ENST00000399494 C4AP0C0L4 1744 aa38.7■■■■□ 3.79
HMGB1-205ENST00000399494 DPEP1P16444 411 aa38.7■■■■□ 3.79
HMGB1-205ENST00000399494 AKAP4Q5JQC9 854 aa38.7■■■■□ 3.79
HMGB1-205ENST00000399494 CEP350Q5VT06 3117 aa38.69■■■■□ 3.78
HMGB1-205ENST00000399494 LGR6Q9HBX8 967 aa38.68■■■■□ 3.78
HMGB1-205ENST00000399494 SRP68Q9UHB9 627 aaKnown RBP38.68■■■■□ 3.78
HMGB1-205ENST00000399494 KIF7Q2M1P5 1343 aa38.67■■■■□ 3.78
HMGB1-205ENST00000399494 INTS5Q6P9B9 1019 aaKnown RBP38.66■■■■□ 3.78
HMGB1-205ENST00000399494 SCN11AQ9UI33 1791 aa38.66■■■■□ 3.78
HMGB1-205ENST00000399494 KCNA3P22001 575 aa38.65■■■■□ 3.78
HMGB1-205ENST00000399494 SLC52A2Q9HAB3 445 aa38.65■■■■□ 3.78
HMGB1-205ENST00000399494 FKBP8Q14318 412 aa38.64■■■■□ 3.78
HMGB1-205ENST00000399494 USP42Q9H9J4 1324 aaKnown RBP38.63■■■■□ 3.78
HMGB1-205ENST00000399494 TJP1Q07157 1748 aa38.63■■■■□ 3.78
HMGB1-205ENST00000399494 PER1O15534 1290 aaPredicted RBP38.63■■■■□ 3.77
HMGB1-205ENST00000399494 KIF3CO14782 793 aa38.62■■■■□ 3.77
HMGB1-205ENST00000399494 ARHGAP27Q6ZUM4 889 aa38.62■■■■□ 3.77
HMGB1-205ENST00000399494 FCHSD2O94868 740 aa38.61■■■■□ 3.77
HMGB1-205ENST00000399494 HMOX1P09601 288 aa38.61■■■■□ 3.77
HMGB1-205ENST00000399494 RNMTO43148 476 aaKnown RBP38.6■■■■□ 3.77
HMGB1-205ENST00000399494 HSPA6P17066 643 aa38.6■■■■□ 3.77
HMGB1-205ENST00000399494 DNAJC10Q8IXB1 793 aa38.6■■■■□ 3.77
HMGB1-205ENST00000399494 DDR1Q08345 913 aa38.59■■■■□ 3.77
HMGB1-205ENST00000399494 TM4SF1P30408 202 aa38.57■■■■□ 3.76
HMGB1-205ENST00000399494 SLC39A6Q13433 755 aa38.56■■■■□ 3.76
HMGB1-205ENST00000399494 MTHFSDQ2M296 383 aaKnown RBP38.55■■■■□ 3.76
HMGB1-205ENST00000399494 PIM2Q9P1W9 311 aa38.55■■■■□ 3.76
HMGB1-205ENST00000399494 BRCA1P38398 1863 aaKnown RBP38.54■■■■□ 3.76
HMGB1-205ENST00000399494 CYP19A1P11511 503 aaPredicted RBP38.54■■■■□ 3.76
HMGB1-205ENST00000399494 ADAMTS7Q9UKP4 1686 aa38.54■■■■□ 3.76
HMGB1-205ENST00000399494 DIAPH1O60610 1272 aaKnown RBP38.53■■■■□ 3.76
HMGB1-205ENST00000399494 CC2D1BQ5T0F9 858 aaKnown RBP38.52■■■■□ 3.76
HMGB1-205ENST00000399494 MRC1P22897 1456 aa38.52■■■■□ 3.76
HMGB1-205ENST00000399494 POLRMTO00411 1230 aaKnown RBP38.51■■■■□ 3.76
HMGB1-205ENST00000399494 ZPR1O75312 459 aa38.51■■■■□ 3.76
HMGB1-205ENST00000399494 SOS1Q07889 1333 aaPredicted RBP38.51■■■■□ 3.76
HMGB1-205ENST00000399494 USPL1Q5W0Q7 1092 aa38.5■■■■□ 3.75
HMGB1-205ENST00000399494 DALRD3Q5D0E6 543 aaKnown RBP38.48■■■■□ 3.75
HMGB1-205ENST00000399494 CHRNA5P30532 468 aa38.46■■■■□ 3.75
HMGB1-205ENST00000399494 KCPQ6ZWJ8 1503 aa38.46■■■■□ 3.75
HMGB1-205ENST00000399494 ARFGEF1Q9Y6D6 1849 aa38.45■■■■□ 3.75
HMGB1-205ENST00000399494 ZEB1P37275 1124 aaPredicted RBP38.45■■■■□ 3.75
HMGB1-205ENST00000399494 C9orf131Q5VYM1 1079 aa38.45■■■■□ 3.75
HMGB1-205ENST00000399494 VSIG10Q8N0Z9 540 aa38.45■■■■□ 3.75
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms