RNA–Protein interactions for RNA: ENST00000399275.6

SMAD9-203, Transcript of SMAD family member 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMAD9, Length 5,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-203ENST00000399275 NAP1L3Q99457 506 aaPredicted RBP11.18□□□□□ -0.62
SMAD9-203ENST00000399275 FKBP5Q13451 457 aaPredicted RBP11.18□□□□□ -0.62
SMAD9-203ENST00000399275 HDAC1Q13547 482 aaPredicted RBP11.18□□□□□ -0.62
SMAD9-203ENST00000399275 LRSAM1Q6UWE0 723 aa11.18□□□□□ -0.62
SMAD9-203ENST00000399275 KRBA2Q6ZNG9 492 aa11.18□□□□□ -0.62
SMAD9-203ENST00000399275 PAXBP1Q9Y5B6 917 aa11.18□□□□□ -0.62
SMAD9-203ENST00000399275 KINO60870 393 aaKnown RBP11.17□□□□□ -0.62
SMAD9-203ENST00000399275 CPLX2Q6PUV4 134 aaKnown RBP11.17□□□□□ -0.62
SMAD9-203ENST00000399275 ZKSCAN5Q9Y2L8 839 aa11.17□□□□□ -0.62
SMAD9-203ENST00000399275 KDM2BQ8NHM5 1336 aa11.17□□□□□ -0.62
SMAD9-203ENST00000399275 GRIN2BQ13224 1484 aa11.17□□□□□ -0.62
SMAD9-203ENST00000399275 CCDC141Q6ZP82 1450 aa11.17□□□□□ -0.62
SMAD9-203ENST00000399275 HIP1O00291 1037 aa11.17□□□□□ -0.62
SMAD9-203ENST00000399275 TRIM29Q14134 588 aa11.17□□□□□ -0.62
SMAD9-203ENST00000399275 TEX2Q8IWB9 1127 aa11.17□□□□□ -0.62
SMAD9-203ENST00000399275 FBF1Q8TES7 1133 aa11.17□□□□□ -0.62
SMAD9-203ENST00000399275 ZSCAN31Q96LW9 406 aaPredicted RBP11.17□□□□□ -0.62
SMAD9-203ENST00000399275 AMPHP49418 695 aa11.17□□□□□ -0.62
SMAD9-203ENST00000399275 AKAP17AQ02040 695 aaKnown RBP11.17□□□□□ -0.62
SMAD9-203ENST00000399275 PTPRKQ15262 1439 aa11.17□□□□□ -0.62
SMAD9-203ENST00000399275 SERPINC1P01008 464 aa11.17□□□□□ -0.62
SMAD9-203ENST00000399275 SMC5Q8IY18 1101 aa11.17□□□□□ -0.62
SMAD9-203ENST00000399275 GGNBP2Q9H3C7 697 aa11.17□□□□□ -0.62
SMAD9-203ENST00000399275 CAMSAP2Q08AD1 1489 aa11.16□□□□□ -0.62
SMAD9-203ENST00000399275 ATP2C2O75185 946 aa11.16□□□□□ -0.62
SMAD9-203ENST00000399275 ANKRD1Q15327 319 aa11.16□□□□□ -0.62
SMAD9-203ENST00000399275 ERC1Q8IUD2 1116 aa11.16□□□□□ -0.62
SMAD9-203ENST00000399275 NUP62CLQ9H1M0 184 aa11.16□□□□□ -0.62
SMAD9-203ENST00000399275 RAB3GAP1Q15042 981 aa11.16□□□□□ -0.62
SMAD9-203ENST00000399275 WHAMMP3Q1A5X7 153 aa11.16□□□□□ -0.62
SMAD9-203ENST00000399275 DNAJC21Q5F1R6 531 aaKnown RBP11.16□□□□□ -0.62
SMAD9-203ENST00000399275 NUTM2DQ5VT03 806 aaPredicted RBP11.16□□□□□ -0.62
SMAD9-203ENST00000399275 DDX46Q7L014 1031 aaKnown RBP11.16□□□□□ -0.62
SMAD9-203ENST00000399275 HYPKQ9NX55 129 aa11.16□□□□□ -0.62
SMAD9-203ENST00000399275 GNAI2P04899 355 aa11.16□□□□□ -0.62
SMAD9-203ENST00000399275 CFAP70Q5T0N1 1121 aa11.16□□□□□ -0.62
SMAD9-203ENST00000399275 CCDC148Q8NFR7 591 aa11.16□□□□□ -0.62
SMAD9-203ENST00000399275 MINK1Q8N4C8 1332 aaPredicted RBP11.16□□□□□ -0.62
SMAD9-203ENST00000399275 CCT4P50991 539 aaKnown RBP11.15□□□□□ -0.62
SMAD9-203ENST00000399275 C6orf163Q5TEZ5 329 aa11.15□□□□□ -0.62
SMAD9-203ENST00000399275 PPFIBP1Q86W92 1011 aa11.15□□□□□ -0.62
SMAD9-203ENST00000399275 ZNF396Q96N95 335 aaPredicted RBP11.15□□□□□ -0.62
SMAD9-203ENST00000399275 UBTFL1P0CB47 393 aaPredicted RBP11.15□□□□□ -0.62
SMAD9-203ENST00000399275 PRKAR2BP31323 418 aa11.15□□□□□ -0.62
SMAD9-203ENST00000399275 PRG4Q92954 1404 aaPredicted RBP11.15□□□□□ -0.62
SMAD9-203ENST00000399275 MAP3K11Q16584 847 aa11.15□□□□□ -0.62
SMAD9-203ENST00000399275 LUC7L2Q9Y383 392 aaKnown RBP11.15□□□□□ -0.62
SMAD9-203ENST00000399275 CYP46A1Q9Y6A2 500 aa11.15□□□□□ -0.62
SMAD9-203ENST00000399275 MARCH6O60337 910 aa11.15□□□□□ -0.63
SMAD9-203ENST00000399275 SH2D4BQ5SQS7 431 aa11.15□□□□□ -0.63
SMAD9-203ENST00000399275 HMGB1P1B2RPK0 211 aaPredicted RBP11.14□□□□□ -0.63
SMAD9-203ENST00000399275 HMOX1P09601 288 aa11.14□□□□□ -0.63
SMAD9-203ENST00000399275 WHAMMQ8TF30 809 aa11.14□□□□□ -0.63
SMAD9-203ENST00000399275 NUCKS1Q9H1E3 243 aaKnown RBP11.14□□□□□ -0.63
SMAD9-203ENST00000399275 FAM114A2Q9NRY5 505 aa11.14□□□□□ -0.63
SMAD9-203ENST00000399275 TSPYL4Q9UJ04 414 aa11.14□□□□□ -0.63
SMAD9-203ENST00000399275 ARHGAP5Q13017 1502 aa11.14□□□□□ -0.63
SMAD9-203ENST00000399275 ZSCAN12O43309 604 aa11.14□□□□□ -0.63
SMAD9-203ENST00000399275 SYNE3Q6ZMZ3 975 aa11.14□□□□□ -0.63
SMAD9-203ENST00000399275 CEP128Q6ZU80 1094 aa11.14□□□□□ -0.63
SMAD9-203ENST00000399275 MRFAP1L1Q96HT8 127 aa11.14□□□□□ -0.63
SMAD9-203ENST00000399275 C9orf78Q9NZ63 289 aaPredicted RBP11.14□□□□□ -0.63
SMAD9-203ENST00000399275 UGGT2Q9NYU1 1516 aa11.14□□□□□ -0.63
SMAD9-203ENST00000399275 G3BP1Q13283 466 aaKnown RBP eCLIP11.14□□□□□ -0.63
SMAD9-203ENST00000399275 CCDC121Q6ZUS5 278 aa11.14□□□□□ -0.63
SMAD9-203ENST00000399275 CCDC114Q96M63 670 aa11.14□□□□□ -0.63
SMAD9-203ENST00000399275 V9GYY5 206 aaPredicted RBP11.14□□□□□ -0.63
SMAD9-203ENST00000399275 CPLX1O14810 134 aa11.14□□□□□ -0.63
SMAD9-203ENST00000399275 CBFA2T2O43439 604 aa11.14□□□□□ -0.63
SMAD9-203ENST00000399275 NEMFO60524 1076 aa11.14□□□□□ -0.63
SMAD9-203ENST00000399275 CASQ1P31415 396 aa11.13□□□□□ -0.63
SMAD9-203ENST00000399275 TMPOP42166 694 aaKnown RBP11.13□□□□□ -0.63
SMAD9-203ENST00000399275 LMNTD2Q8IXW0 634 aa11.13□□□□□ -0.63
SMAD9-203ENST00000399275 CCDC172P0C7W6 258 aa11.13□□□□□ -0.63
SMAD9-203ENST00000399275 TXLNAP40222 546 aa11.13□□□□□ -0.63
SMAD9-203ENST00000399275 ARHGAP29Q52LW3 1261 aa11.13□□□□□ -0.63
SMAD9-203ENST00000399275 ARFGAP3Q9NP61 516 aa11.13□□□□□ -0.63
SMAD9-203ENST00000399275 SSH1Q8WYL5 1049 aa11.13□□□□□ -0.63
SMAD9-203ENST00000399275 TCOF1Q13428 1488 aaKnown RBP11.13□□□□□ -0.63
SMAD9-203ENST00000399275 TBC1D9Q6ZT07 1266 aa11.13□□□□□ -0.63
SMAD9-203ENST00000399275 PPP6R1Q9UPN7 881 aa11.13□□□□□ -0.63
SMAD9-203ENST00000399275 NSD3Q9BZ95 1437 aa11.13□□□□□ -0.63
SMAD9-203ENST00000399275 DIXDC1Q155Q3 683 aa11.13□□□□□ -0.63
SMAD9-203ENST00000399275 ZNF397Q8NF99 534 aaPredicted RBP11.13□□□□□ -0.63
SMAD9-203ENST00000399275 SYNJ2O15056 1496 aa11.12□□□□□ -0.63
SMAD9-203ENST00000399275 MRC2Q9UBG0 1479 aa11.12□□□□□ -0.63
SMAD9-203ENST00000399275 FCHSD2O94868 740 aa11.12□□□□□ -0.63
SMAD9-203ENST00000399275 PEX19P40855 299 aa11.12□□□□□ -0.63
SMAD9-203ENST00000399275 NUCB1Q02818 461 aa11.12□□□□□ -0.63
SMAD9-203ENST00000399275 CCDC113Q9H0I3 377 aa11.12□□□□□ -0.63
SMAD9-203ENST00000399275 CABP2Q9NPB3 220 aa11.12□□□□□ -0.63
SMAD9-203ENST00000399275 USP25Q9UHP3 1055 aa11.12□□□□□ -0.63
SMAD9-203ENST00000399275 ADCY5O95622 1261 aa11.12□□□□□ -0.63
SMAD9-203ENST00000399275 RLBP1P12271 317 aa11.12□□□□□ -0.63
SMAD9-203ENST00000399275 BRPF1P55201 1214 aaPredicted RBP11.12□□□□□ -0.63
SMAD9-203ENST00000399275 CEP120Q8N960 986 aa11.12□□□□□ -0.63
SMAD9-203ENST00000399275 EFCC1Q9HA90 598 aa11.12□□□□□ -0.63
SMAD9-203ENST00000399275 LARP1BQ659C4 914 aaKnown RBP11.12□□□□□ -0.63
SMAD9-203ENST00000399275 SLC12A5Q9H2X9 1139 aa11.12□□□□□ -0.63
SMAD9-203ENST00000399275 LUC7LQ9NQ29 371 aaKnown RBP11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms