RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 ZNF287Q9HBT7 754 aa13.37□□□□□ -0.27
TTC28-201ENST00000397906 JARID2Q92833 1246 aaPredicted RBP13.37□□□□□ -0.27
TTC28-201ENST00000397906 ZNHIT6Q9NWK9 470 aaKnown RBP13.37□□□□□ -0.27
TTC28-201ENST00000397906 SLC5A1P13866 664 aa13.37□□□□□ -0.27
TTC28-201ENST00000397906 MCM2P49736 904 aa13.37□□□□□ -0.27
TTC28-201ENST00000397906 NOM1Q5C9Z4 860 aaKnown RBP13.36□□□□□ -0.27
TTC28-201ENST00000397906 TEX35Q5T0J7 233 aa13.36□□□□□ -0.27
TTC28-201ENST00000397906 NAPBQ9H115 298 aa13.36□□□□□ -0.27
TTC28-201ENST00000397906 LETM1O95202 739 aaPredicted RBP13.36□□□□□ -0.27
TTC28-201ENST00000397906 CEP57L1Q8IYX8 460 aa13.36□□□□□ -0.27
TTC28-201ENST00000397906 FAM177A1Q8N128 213 aaPredicted RBP13.36□□□□□ -0.27
TTC28-201ENST00000397906 CCDC8Q9H0W5 538 aaPredicted RBP13.36□□□□□ -0.27
TTC28-201ENST00000397906 MYO6Q9UM54 1294 aa13.36□□□□□ -0.27
TTC28-201ENST00000397906 ATP5J2-PTCD1G3V325 749 aa13.36□□□□□ -0.27
TTC28-201ENST00000397906 ANKRD18BA2A2Z9 1011 aa13.36□□□□□ -0.27
TTC28-201ENST00000397906 WASLO00401 505 aaPredicted RBP13.36□□□□□ -0.27
TTC28-201ENST00000397906 PDE3AQ14432 1141 aa13.36□□□□□ -0.27
TTC28-201ENST00000397906 MPNDQ8N594 471 aa13.36□□□□□ -0.27
TTC28-201ENST00000397906 PTPN23Q9H3S7 1636 aa13.36□□□□□ -0.27
TTC28-201ENST00000397906 MSH6P52701 1360 aa13.36□□□□□ -0.27
TTC28-201ENST00000397906 PIP4K2AP48426 406 aaPredicted RBP13.36□□□□□ -0.27
TTC28-201ENST00000397906 ADGRF5Q8IZF2 1346 aa13.36□□□□□ -0.27
TTC28-201ENST00000397906 BMP2KQ9NSY1 1161 aaPredicted RBP13.36□□□□□ -0.27
TTC28-201ENST00000397906 HSP90B2PQ58FF3 399 aa13.35□□□□□ -0.27
TTC28-201ENST00000397906 HMGB2P26583 209 aaKnown RBP13.35□□□□□ -0.27
TTC28-201ENST00000397906 FANCAO15360 1455 aa13.35□□□□□ -0.27
TTC28-201ENST00000397906 NEFHP12036 1026 aa13.35□□□□□ -0.27
TTC28-201ENST00000397906 UBA5Q9GZZ9 404 aa13.35□□□□□ -0.27
TTC28-201ENST00000397906 A0A087WZG4 1122 aa13.35□□□□□ -0.27
TTC28-201ENST00000397906 ANKRD62A6NC57 917 aa13.35□□□□□ -0.27
TTC28-201ENST00000397906 IDI1Q13907 227 aa13.35□□□□□ -0.27
TTC28-201ENST00000397906 ARGLU1Q9NWB6 273 aaPredicted RBP13.35□□□□□ -0.27
TTC28-201ENST00000397906 TNIP1Q15025 636 aa13.35□□□□□ -0.27
TTC28-201ENST00000397906 NFKBIBQ15653 356 aa13.35□□□□□ -0.27
TTC28-201ENST00000397906 SSR1P43307 286 aaKnown RBP13.35□□□□□ -0.27
TTC28-201ENST00000397906 SPATA32Q96LK8 384 aa13.35□□□□□ -0.27
TTC28-201ENST00000397906 AEBP1Q8IUX7 1158 aa13.34□□□□□ -0.27
TTC28-201ENST00000397906 ZNF444Q8N0Y2 327 aaPredicted RBP13.34□□□□□ -0.27
TTC28-201ENST00000397906 ST5P78524 1137 aa13.34□□□□□ -0.27
TTC28-201ENST00000397906 TMEM87AQ8NBN3 555 aa13.34□□□□□ -0.27
TTC28-201ENST00000397906 FEZ1Q99689 392 aa13.34□□□□□ -0.27
TTC28-201ENST00000397906 MAP3K12Q12852 859 aa13.34□□□□□ -0.27
TTC28-201ENST00000397906 ANKRD24Q8TF21 1146 aa13.34□□□□□ -0.27
TTC28-201ENST00000397906 LAMC3Q9Y6N6 1575 aa13.34□□□□□ -0.27
TTC28-201ENST00000397906 DDX46Q7L014 1031 aaKnown RBP13.34□□□□□ -0.27
TTC28-201ENST00000397906 PPFIBP1Q86W92 1011 aa13.33□□□□□ -0.27
TTC28-201ENST00000397906 MAP3K2Q9Y2U5 619 aa13.33□□□□□ -0.27
TTC28-201ENST00000397906 PRPF40BQ6NWY9 871 aaKnown RBP13.33□□□□□ -0.27
TTC28-201ENST00000397906 NOS1P29475 1434 aa13.33□□□□□ -0.28
TTC28-201ENST00000397906 CCDC39Q9UFE4 941 aa13.33□□□□□ -0.28
TTC28-201ENST00000397906 TRAK2O60296 914 aa13.33□□□□□ -0.28
TTC28-201ENST00000397906 ATP6V1AP38606 617 aa13.33□□□□□ -0.28
TTC28-201ENST00000397906 PPP4R3AQ6IN85 833 aa13.33□□□□□ -0.28
TTC28-201ENST00000397906 FBLN1P23142 703 aa13.33□□□□□ -0.28
TTC28-201ENST00000397906 LRRFIP2Q9Y608 721 aaKnown RBP13.33□□□□□ -0.28
TTC28-201ENST00000397906 DENND4BO75064 1496 aaPredicted RBP13.33□□□□□ -0.28
TTC28-201ENST00000397906 DACH1Q9UI36 760 aa13.33□□□□□ -0.28
TTC28-201ENST00000397906 CLEC11AQ9Y240 323 aa13.33□□□□□ -0.28
TTC28-201ENST00000397906 CUL7Q14999 1698 aa13.33□□□□□ -0.28
TTC28-201ENST00000397906 F8W031 263 aaPredicted RBP13.33□□□□□ -0.28
TTC28-201ENST00000397906 NBPF6Q5VWK0 638 aa13.33□□□□□ -0.28
TTC28-201ENST00000397906 NBPF5PQ86XG9 351 aaPredicted RBP13.33□□□□□ -0.28
TTC28-201ENST00000397906 NBPF4Q96M43 638 aa13.33□□□□□ -0.28
TTC28-201ENST00000397906 ACBD3Q9H3P7 528 aa13.33□□□□□ -0.28
TTC28-201ENST00000397906 HSP90AB3PQ58FF7 597 aa13.32□□□□□ -0.28
TTC28-201ENST00000397906 KRT85P78386 507 aa13.32□□□□□ -0.28
TTC28-201ENST00000397906 CCDC181Q5TID7 509 aa13.32□□□□□ -0.28
TTC28-201ENST00000397906 CA8P35219 290 aa13.32□□□□□ -0.28
TTC28-201ENST00000397906 MX1P20591 662 aa13.32□□□□□ -0.28
TTC28-201ENST00000397906 CCDC184Q52MB2 194 aa13.32□□□□□ -0.28
TTC28-201ENST00000397906 CT47B1P0C2W7 299 aaPredicted RBP13.32□□□□□ -0.28
TTC28-201ENST00000397906 CCDC144CPQ8IYA2 1237 aa13.32□□□□□ -0.28
TTC28-201ENST00000397906 KIF1BPQ96EK5 621 aa13.32□□□□□ -0.28
TTC28-201ENST00000397906 GRIN2AQ12879 1464 aa13.32□□□□□ -0.28
TTC28-201ENST00000397906 CUL5Q93034 780 aa13.32□□□□□ -0.28
TTC28-201ENST00000397906 WASF1Q92558 559 aa13.32□□□□□ -0.28
TTC28-201ENST00000397906 CCDC97Q96F63 343 aaPredicted RBP13.32□□□□□ -0.28
TTC28-201ENST00000397906 K7ELQ4 463 aaPredicted RBP13.31□□□□□ -0.28
TTC28-201ENST00000397906 WDR97A6NE52 1622 aa13.31□□□□□ -0.28
TTC28-201ENST00000397906 ACEP12821 1306 aa13.31□□□□□ -0.28
TTC28-201ENST00000397906 CAMK4Q16566 473 aa13.31□□□□□ -0.28
TTC28-201ENST00000397906 CABLES1Q8TDN4 633 aa13.31□□□□□ -0.28
TTC28-201ENST00000397906 VAT1LQ9HCJ6 419 aa13.31□□□□□ -0.28
TTC28-201ENST00000397906 TRIM21P19474 475 aaKnown RBP13.31□□□□□ -0.28
TTC28-201ENST00000397906 GUCY1B3Q02153 619 aa13.3□□□□□ -0.28
TTC28-201ENST00000397906 DNAAF4Q8WXU2 420 aa13.3□□□□□ -0.28
TTC28-201ENST00000397906 IFNL2Q8IZJ0 200 aa13.3□□□□□ -0.28
TTC28-201ENST00000397906 HYPKQ9NX55 129 aa13.3□□□□□ -0.28
TTC28-201ENST00000397906 U3KPZ7 1027 aaPredicted RBP13.3□□□□□ -0.28
TTC28-201ENST00000397906 CCDC192P0DO97 292 aa13.3□□□□□ -0.28
TTC28-201ENST00000397906 WDR33Q9C0J8 1336 aaKnown RBP13.3□□□□□ -0.28
TTC28-201ENST00000397906 ABCC5O15440 1437 aa13.3□□□□□ -0.28
TTC28-201ENST00000397906 KRT32Q14532 448 aa13.3□□□□□ -0.28
TTC28-201ENST00000397906 CCDC83Q8IWF9 413 aa13.3□□□□□ -0.28
TTC28-201ENST00000397906 FAM43AQ8N2R8 423 aa13.3□□□□□ -0.28
TTC28-201ENST00000397906 SNRKQ9NRH2 765 aa13.3□□□□□ -0.28
TTC28-201ENST00000397906 SLC12A7Q9Y666 1083 aa13.3□□□□□ -0.28
TTC28-201ENST00000397906 TOM1O60784 492 aa13.29□□□□□ -0.28
TTC28-201ENST00000397906 UBE3BQ7Z3V4 1068 aa13.29□□□□□ -0.28
TTC28-201ENST00000397906 CADPS2Q86UW7 1296 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms