RNA–Protein interactions for RNA: ENST00000397617.7

PTPRD-206, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 5 BASIC

Gene PTPRD, Length 8,248 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-206ENST00000397617 DDX21Q9NR30 783 aaKnown RBP eCLIP7.3□□□□□ -1.24
PTPRD-206ENST00000397617 SNX21Q969T3 373 aa7.3□□□□□ -1.24
PTPRD-206ENST00000397617 STAP2Q9UGK3 403 aa7.3□□□□□ -1.24
PTPRD-206ENST00000397617 IFNL2Q8IZJ0 200 aa7.29□□□□□ -1.24
PTPRD-206ENST00000397617 PCDHB15Q9Y5E8 787 aa7.29□□□□□ -1.24
PTPRD-206ENST00000397617 UTYO14607 1347 aa7.29□□□□□ -1.24
PTPRD-206ENST00000397617 KRT28Q7Z3Y7 464 aa7.29□□□□□ -1.24
PTPRD-206ENST00000397617 TATP17735 454 aaPredicted RBP7.29□□□□□ -1.24
PTPRD-206ENST00000397617 FLIIQ13045 1269 aa7.29□□□□□ -1.24
PTPRD-206ENST00000397617 C1orf141Q5JVX7 400 aa7.29□□□□□ -1.24
PTPRD-206ENST00000397617 C14orf37Q86TY3 774 aa7.29□□□□□ -1.24
PTPRD-206ENST00000397617 SSH3Q8TE77 659 aa7.29□□□□□ -1.24
PTPRD-206ENST00000397617 COL22A1Q8NFW1 1626 aaPredicted RBP7.28□□□□□ -1.24
PTPRD-206ENST00000397617 ABCC12Q96J65 1359 aa7.28□□□□□ -1.24
PTPRD-206ENST00000397617 TSPYL4Q9UJ04 414 aa7.28□□□□□ -1.24
PTPRD-206ENST00000397617 GNAI2P04899 355 aa7.28□□□□□ -1.24
PTPRD-206ENST00000397617 ESCO1Q5FWF5 840 aa7.28□□□□□ -1.24
PTPRD-206ENST00000397617 TBC1D32Q96NH3 1257 aa7.28□□□□□ -1.24
PTPRD-206ENST00000397617 USP42Q9H9J4 1324 aaKnown RBP7.28□□□□□ -1.24
PTPRD-206ENST00000397617 ZNF831Q5JPB2 1677 aa7.28□□□□□ -1.24
PTPRD-206ENST00000397617 RRS1Q15050 365 aaKnown RBP7.28□□□□□ -1.24
PTPRD-206ENST00000397617 TMEM57Q8N5G2 664 aa7.28□□□□□ -1.24
PTPRD-206ENST00000397617 ATG3Q9NT62 314 aa7.28□□□□□ -1.24
PTPRD-206ENST00000397617 NEUROD2Q15784 382 aa7.27□□□□□ -1.24
PTPRD-206ENST00000397617 ZNF530Q6P9A1 599 aaPredicted RBP7.27□□□□□ -1.24
PTPRD-206ENST00000397617 CASC1Q6TDU7 716 aa7.27□□□□□ -1.24
PTPRD-206ENST00000397617 FRAT1Q92837 279 aaPredicted RBP7.27□□□□□ -1.24
PTPRD-206ENST00000397617 TTC41PQ6P2S7 1318 aa7.27□□□□□ -1.24
PTPRD-206ENST00000397617 MTHFSDQ2M296 383 aaKnown RBP7.27□□□□□ -1.25
PTPRD-206ENST00000397617 RLBP1P12271 317 aa7.27□□□□□ -1.25
PTPRD-206ENST00000397617 BCL9O00512 1426 aa7.27□□□□□ -1.25
PTPRD-206ENST00000397617 HDGFL1Q5TGJ6 251 aa7.27□□□□□ -1.25
PTPRD-206ENST00000397617 ITPRIPQ8IWB1 547 aa7.27□□□□□ -1.25
PTPRD-206ENST00000397617 LRRC59Q96AG4 307 aaKnown RBP7.27□□□□□ -1.25
PTPRD-206ENST00000397617 BCL11BQ9C0K0 894 aaPredicted RBP7.27□□□□□ -1.25
PTPRD-206ENST00000397617 SLAIN2Q9P270 581 aa7.27□□□□□ -1.25
PTPRD-206ENST00000397617 C20orf194Q5TEA3 1177 aa7.27□□□□□ -1.25
PTPRD-206ENST00000397617 STRCQ7RTU9 1775 aa7.27□□□□□ -1.25
PTPRD-206ENST00000397617 LARP1Q6PKG0 1096 aaKnown RBP7.26□□□□□ -1.25
PTPRD-206ENST00000397617 CHD1LQ86WJ1 897 aa7.26□□□□□ -1.25
PTPRD-206ENST00000397617 AK7Q96M32 723 aa7.26□□□□□ -1.25
PTPRD-206ENST00000397617 NOB1Q9ULX3 412 aaKnown RBP7.26□□□□□ -1.25
PTPRD-206ENST00000397617 THRAP3Q9Y2W1 955 aaKnown RBP7.26□□□□□ -1.25
PTPRD-206ENST00000397617 RRP7AQ9Y3A4 280 aaKnown RBP7.26□□□□□ -1.25
PTPRD-206ENST00000397617 RAD50Q92878 1312 aa7.26□□□□□ -1.25
PTPRD-206ENST00000397617 PCDH11XQ9BZA7 1347 aa7.26□□□□□ -1.25
PTPRD-206ENST00000397617 PCDH11YQ9BZA8 1340 aa7.26□□□□□ -1.25
PTPRD-206ENST00000397617 C8orf34Q49A92 452 aa7.26□□□□□ -1.25
PTPRD-206ENST00000397617 HIP1O00291 1037 aa7.26□□□□□ -1.25
PTPRD-206ENST00000397617 NEXNQ0ZGT2 675 aa7.26□□□□□ -1.25
PTPRD-206ENST00000397617 PANK1Q8TE04 598 aa7.26□□□□□ -1.25
PTPRD-206ENST00000397617 FOXO3O43524 673 aa7.26□□□□□ -1.25
PTPRD-206ENST00000397617 TSR2Q969E8 191 aaKnown RBP7.26□□□□□ -1.25
PTPRD-206ENST00000397617 IL17REQ8NFR9 667 aa7.26□□□□□ -1.25
PTPRD-206ENST00000397617 NWD2Q9ULI1 1742 aa7.26□□□□□ -1.25
PTPRD-206ENST00000397617 EIF4A1P60842 406 aaKnown RBP7.25□□□□□ -1.25
PTPRD-206ENST00000397617 RABEP1Q15276 862 aa7.25□□□□□ -1.25
PTPRD-206ENST00000397617 LRRFIP1Q32MZ4 808 aaKnown RBP7.25□□□□□ -1.25
PTPRD-206ENST00000397617 HMOX1P09601 288 aa7.25□□□□□ -1.25
PTPRD-206ENST00000397617 CNGB1Q14028 1251 aaPredicted RBP7.25□□□□□ -1.25
PTPRD-206ENST00000397617 KSR2Q6VAB6 950 aa7.25□□□□□ -1.25
PTPRD-206ENST00000397617 GPR108Q9NPR9 543 aa7.25□□□□□ -1.25
PTPRD-206ENST00000397617 CLEC17AQ6ZS10 378 aa7.25□□□□□ -1.25
PTPRD-206ENST00000397617 TNS2Q63HR2 1409 aa7.25□□□□□ -1.25
PTPRD-206ENST00000397617 AEBP1Q8IUX7 1158 aa7.25□□□□□ -1.25
PTPRD-206ENST00000397617 ATP8B2P98198 1209 aa7.25□□□□□ -1.25
PTPRD-206ENST00000397617 SALL2Q9Y467 1007 aaPredicted RBP7.25□□□□□ -1.25
PTPRD-206ENST00000397617 CDC45O75419 566 aa7.25□□□□□ -1.25
PTPRD-206ENST00000397617 GIGYF1O75420 1035 aaPredicted RBP7.25□□□□□ -1.25
PTPRD-206ENST00000397617 C8orf58Q8NAV2 365 aa7.25□□□□□ -1.25
PTPRD-206ENST00000397617 ANKRD24Q8TF21 1146 aa7.24□□□□□ -1.25
PTPRD-206ENST00000397617 SNRKQ9NRH2 765 aa7.24□□□□□ -1.25
PTPRD-206ENST00000397617 PDZRN3Q9UPQ7 1066 aa7.24□□□□□ -1.25
PTPRD-206ENST00000397617 CARMIL3Q8ND23 1372 aa7.24□□□□□ -1.25
PTPRD-206ENST00000397617 XIRP1Q702N8 1843 aaKnown RBP7.24□□□□□ -1.25
PTPRD-206ENST00000397617 LAMB4A4D0S4 1761 aa7.24□□□□□ -1.25
PTPRD-206ENST00000397617 SNRPA1P09661 255 aaKnown RBP7.24□□□□□ -1.25
PTPRD-206ENST00000397617 KIF1BPQ96EK5 621 aa7.24□□□□□ -1.25
PTPRD-206ENST00000397617 FMNL2Q96PY5 1086 aa7.24□□□□□ -1.25
PTPRD-206ENST00000397617 PRDM11Q9NQV5 511 aa7.24□□□□□ -1.25
PTPRD-206ENST00000397617 PLCH1Q4KWH8 1693 aa7.24□□□□□ -1.25
PTPRD-206ENST00000397617 POLA2Q14181 598 aa7.23□□□□□ -1.25
PTPRD-206ENST00000397617 DNAAF4Q8WXU2 420 aa7.23□□□□□ -1.25
PTPRD-206ENST00000397617 COL14A1Q05707 1796 aaKnown RBP7.23□□□□□ -1.25
PTPRD-206ENST00000397617 RNMTO43148 476 aaKnown RBP7.23□□□□□ -1.25
PTPRD-206ENST00000397617 SPEF2Q9C093 1822 aa7.23□□□□□ -1.25
PTPRD-206ENST00000397617 HSP90AB3PQ58FF7 597 aa7.23□□□□□ -1.25
PTPRD-206ENST00000397617 NBPF6Q5VWK0 638 aa7.23□□□□□ -1.25
PTPRD-206ENST00000397617 NBPF4Q96M43 638 aa7.23□□□□□ -1.25
PTPRD-206ENST00000397617 COL5A2P05997 1499 aaPredicted RBP7.23□□□□□ -1.25
PTPRD-206ENST00000397617 SLC4A2P04920 1241 aa7.23□□□□□ -1.25
PTPRD-206ENST00000397617 BRINP3Q76B58 766 aa7.23□□□□□ -1.25
PTPRD-206ENST00000397617 COPRSQ9NQ92 184 aa7.23□□□□□ -1.25
PTPRD-206ENST00000397617 PLIN1O60240 522 aa7.23□□□□□ -1.25
PTPRD-206ENST00000397617 CEP85Q6P2H3 762 aa7.23□□□□□ -1.25
PTPRD-206ENST00000397617 GLIPR1L2Q4G1C9 344 aa7.23□□□□□ -1.25
PTPRD-206ENST00000397617 SALL3Q9BXA9 1300 aa7.22□□□□□ -1.25
PTPRD-206ENST00000397617 ERC2O15083 957 aa7.22□□□□□ -1.25
PTPRD-206ENST00000397617 GLRX3O76003 335 aaKnown RBP7.22□□□□□ -1.25
PTPRD-206ENST00000397617 GPATCH3Q96I76 525 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms