RNA–Protein interactions for RNA: ENST00000397204.8

CAPN3-208, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,237 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-208ENST00000397204 TMF1P82094 1093 aa12.25□□□□□ -0.45
CAPN3-208ENST00000397204 CCNL1Q9UK58 526 aaPredicted RBP12.25□□□□□ -0.45
CAPN3-208ENST00000397204 C1QTNF8P60827 252 aa12.24□□□□□ -0.45
CAPN3-208ENST00000397204 PAPPAQ13219 1627 aa12.24□□□□□ -0.45
CAPN3-208ENST00000397204 RRS1Q15050 365 aaKnown RBP12.24□□□□□ -0.45
CAPN3-208ENST00000397204 GGNBP2Q9H3C7 697 aa12.24□□□□□ -0.45
CAPN3-208ENST00000397204 BTAF1O14981 1849 aa12.23□□□□□ -0.45
CAPN3-208ENST00000397204 LTN1O94822 1766 aa12.23□□□□□ -0.45
CAPN3-208ENST00000397204 RTL1A6NKG5 1358 aa12.23□□□□□ -0.45
CAPN3-208ENST00000397204 USP47Q96K76 1375 aa12.23□□□□□ -0.45
CAPN3-208ENST00000397204 GRIN3BO60391 1043 aa12.23□□□□□ -0.45
CAPN3-208ENST00000397204 TATP17735 454 aaPredicted RBP12.23□□□□□ -0.45
CAPN3-208ENST00000397204 CDCA8Q53HL2 280 aa12.23□□□□□ -0.45
CAPN3-208ENST00000397204 FLAD1Q8NFF5 587 aa12.23□□□□□ -0.45
CAPN3-208ENST00000397204 NSD2O96028 1365 aa12.22□□□□□ -0.45
CAPN3-208ENST00000397204 COL23A1Q86Y22 540 aaPredicted RBP12.22□□□□□ -0.45
CAPN3-208ENST00000397204 TMEM106CQ9BVX2 250 aa12.22□□□□□ -0.45
CAPN3-208ENST00000397204 HSP90AB2PQ58FF8 381 aa12.21□□□□□ -0.45
CAPN3-208ENST00000397204 USHBP1Q8N6Y0 703 aa12.21□□□□□ -0.45
CAPN3-208ENST00000397204 INSRP06213 1382 aa12.2□□□□□ -0.46
CAPN3-208ENST00000397204 KIF24Q5T7B8 1368 aa12.2□□□□□ -0.46
CAPN3-208ENST00000397204 NLGN2Q8NFZ4 835 aa12.2□□□□□ -0.46
CAPN3-208ENST00000397204 CEP350Q5VT06 3117 aa12.2□□□□□ -0.46
CAPN3-208ENST00000397204 SMG6Q86US8 1419 aaKnown RBP12.2□□□□□ -0.46
CAPN3-208ENST00000397204 PCDH11XQ9BZA7 1347 aa12.19□□□□□ -0.46
CAPN3-208ENST00000397204 PCDH11YQ9BZA8 1340 aa12.19□□□□□ -0.46
CAPN3-208ENST00000397204 SMARCC1Q92922 1105 aaPredicted RBP12.19□□□□□ -0.46
CAPN3-208ENST00000397204 CD2APQ9Y5K6 639 aa12.19□□□□□ -0.46
CAPN3-208ENST00000397204 MEGF6O75095 1541 aa12.19□□□□□ -0.46
CAPN3-208ENST00000397204 FAM208AQ9UK61 1670 aaKnown RBP12.19□□□□□ -0.46
CAPN3-208ENST00000397204 CHD4Q14839 1912 aa12.18□□□□□ -0.46
CAPN3-208ENST00000397204 SENP3-EIF4A1A0A087X0R7 540 aa12.18□□□□□ -0.46
CAPN3-208ENST00000397204 CYP27B1O15528 508 aa12.18□□□□□ -0.46
CAPN3-208ENST00000397204 MPRIPQ6WCQ1 1025 aa12.18□□□□□ -0.46
CAPN3-208ENST00000397204 FLT4P35916 1363 aa12.18□□□□□ -0.46
CAPN3-208ENST00000397204 GIGYF1O75420 1035 aaPredicted RBP12.17□□□□□ -0.46
CAPN3-208ENST00000397204 NKX1-1Q15270 411 aaPredicted RBP12.17□□□□□ -0.46
CAPN3-208ENST00000397204 CARD14Q9BXL6 1004 aa12.17□□□□□ -0.46
CAPN3-208ENST00000397204 TRIM35Q9UPQ4 493 aa12.17□□□□□ -0.46
CAPN3-208ENST00000397204 ECM2O94769 699 aaPredicted RBP12.16□□□□□ -0.46
CAPN3-208ENST00000397204 YBX3P16989 372 aaKnown RBP eCLIP12.16□□□□□ -0.46
CAPN3-208ENST00000397204 PSEN1P49768 467 aa12.16□□□□□ -0.46
CAPN3-208ENST00000397204 SLC39A7Q92504 469 aa12.16□□□□□ -0.46
CAPN3-208ENST00000397204 RNF25Q96BH1 459 aaPredicted RBP12.16□□□□□ -0.46
CAPN3-208ENST00000397204 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.16□□□□□ -0.46
CAPN3-208ENST00000397204 SPG7Q9UQ90 795 aa12.16□□□□□ -0.46
CAPN3-208ENST00000397204 PALLDQ8WX93 1383 aa12.16□□□□□ -0.46
CAPN3-208ENST00000397204 QSER1Q2KHR3 1735 aa12.15□□□□□ -0.46
CAPN3-208ENST00000397204 MSL1Q68DK7 614 aa12.15□□□□□ -0.46
CAPN3-208ENST00000397204 PIGBQ92521 554 aa12.15□□□□□ -0.46
CAPN3-208ENST00000397204 METRNQ9UJH8 293 aa12.15□□□□□ -0.46
CAPN3-208ENST00000397204 WASHC2AQ641Q2 1341 aa12.14□□□□□ -0.47
CAPN3-208ENST00000397204 PDAP1Q13442 181 aaKnown RBP12.14□□□□□ -0.47
CAPN3-208ENST00000397204 AK7Q96M32 723 aa12.14□□□□□ -0.47
CAPN3-208ENST00000397204 TIMELESSQ9UNS1 1208 aa12.14□□□□□ -0.47
CAPN3-208ENST00000397204 EMILIN1Q9Y6C2 1016 aa12.14□□□□□ -0.47
CAPN3-208ENST00000397204 COL24A1Q17RW2 1714 aa12.14□□□□□ -0.47
CAPN3-208ENST00000397204 PPM1GO15355 546 aaPredicted RBP12.13□□□□□ -0.47
CAPN3-208ENST00000397204 LY75O60449 1722 aa12.13□□□□□ -0.47
CAPN3-208ENST00000397204 RIOK3O14730 519 aaKnown RBP12.12□□□□□ -0.47
CAPN3-208ENST00000397204 C7P10643 843 aa12.12□□□□□ -0.47
CAPN3-208ENST00000397204 EYA1Q99502 592 aa12.12□□□□□ -0.47
CAPN3-208ENST00000397204 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.11□□□□□ -0.47
CAPN3-208ENST00000397204 LOC102724428A0A0B4J2F2 783 aa12.11□□□□□ -0.47
CAPN3-208ENST00000397204 SSFA2P28290 1259 aa12.11□□□□□ -0.47
CAPN3-208ENST00000397204 SIK1P57059 783 aa12.11□□□□□ -0.47
CAPN3-208ENST00000397204 IFNL2Q8IZJ0 200 aa12.11□□□□□ -0.47
CAPN3-208ENST00000397204 DOT1LQ8TEK3 1739 aa12.11□□□□□ -0.47
CAPN3-208ENST00000397204 RGPD2P0DJD1 1756 aa12.1□□□□□ -0.47
CAPN3-208ENST00000397204 TRIM26Q12899 539 aaPredicted RBP12.1□□□□□ -0.47
CAPN3-208ENST00000397204 LHX8Q68G74 356 aa12.1□□□□□ -0.47
CAPN3-208ENST00000397204 TMOD3Q9NYL9 352 aa12.1□□□□□ -0.47
CAPN3-208ENST00000397204 POLKQ9UBT6 870 aa12.1□□□□□ -0.47
CAPN3-208ENST00000397204 NSD3Q9BZ95 1437 aa12.1□□□□□ -0.47
CAPN3-208ENST00000397204 SHANK3Q9BYB0 1731 aa12.09□□□□□ -0.47
CAPN3-208ENST00000397204 PHF14O94880 888 aa12.09□□□□□ -0.47
CAPN3-208ENST00000397204 PHKG2P15735 406 aa12.09□□□□□ -0.47
CAPN3-208ENST00000397204 AMIGO3Q86WK7 504 aa12.09□□□□□ -0.47
CAPN3-208ENST00000397204 GPBP1L1Q9HC44 474 aaPredicted RBP12.09□□□□□ -0.47
CAPN3-208ENST00000397204 ASAP1Q9ULH1 1129 aa12.09□□□□□ -0.47
CAPN3-208ENST00000397204 NCAPD2Q15021 1401 aa12.09□□□□□ -0.47
CAPN3-208ENST00000397204 ATP6V1AP38606 617 aa12.08□□□□□ -0.48
CAPN3-208ENST00000397204 LINC00116Q8NCU8 138 aa12.08□□□□□ -0.48
CAPN3-208ENST00000397204 ERVV-2B6SEH9 535 aa12.07□□□□□ -0.48
CAPN3-208ENST00000397204 RGL2O15211 777 aa12.07□□□□□ -0.48
CAPN3-208ENST00000397204 ITPK1Q13572 414 aa12.07□□□□□ -0.48
CAPN3-208ENST00000397204 SMIM5Q71RC9 77 aa12.07□□□□□ -0.48
CAPN3-208ENST00000397204 ATG3Q9NT62 314 aa12.07□□□□□ -0.48
CAPN3-208ENST00000397204 TUBGCP6Q96RT7 1819 aa12.07□□□□□ -0.48
CAPN3-208ENST00000397204 ATP10DQ9P241 1426 aa12.06□□□□□ -0.48
CAPN3-208ENST00000397204 GNPATO15228 680 aa12.06□□□□□ -0.48
CAPN3-208ENST00000397204 TRAPPC3LQ5T215 181 aa12.06□□□□□ -0.48
CAPN3-208ENST00000397204 RC3H1Q5TC82 1133 aaKnown RBP12.06□□□□□ -0.48
CAPN3-208ENST00000397204 NLGN1Q8N2Q7 840 aa12.06□□□□□ -0.48
CAPN3-208ENST00000397204 IGSF1Q8N6C5 1336 aa12.06□□□□□ -0.48
CAPN3-208ENST00000397204 PLEKHG2Q9H7P9 1386 aa12.05□□□□□ -0.48
CAPN3-208ENST00000397204 POTEFA5A3E0 1075 aa12.05□□□□□ -0.48
CAPN3-208ENST00000397204 POTEB2H3BUK9 544 aa12.05□□□□□ -0.48
CAPN3-208ENST00000397204 HSP90AB1P08238 724 aaKnown RBP12.05□□□□□ -0.48
CAPN3-208ENST00000397204 EIF4A2Q14240 407 aaKnown RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms