RNA–Protein interactions for RNA: ENST00000397163.7

CAPN3-206, Transcript of calpain 3, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CAPN3, Length 3,228 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-206ENST00000397163 STAG3Q9UJ98 1225 aa11.13□□□□□ -0.63
CAPN3-206ENST00000397163 RTL1A6NKG5 1358 aa11.13□□□□□ -0.63
CAPN3-206ENST00000397163 MSH6P52701 1360 aa11.13□□□□□ -0.63
CAPN3-206ENST00000397163 WAPLQ7Z5K2 1190 aa11.13□□□□□ -0.63
CAPN3-206ENST00000397163 CGNQ9P2M7 1197 aaKnown RBP11.13□□□□□ -0.63
CAPN3-206ENST00000397163 MCCP23508 829 aa11.12□□□□□ -0.63
CAPN3-206ENST00000397163 MCM2P49736 904 aa11.12□□□□□ -0.63
CAPN3-206ENST00000397163 BRD1O95696 1058 aa11.12□□□□□ -0.63
CAPN3-206ENST00000397163 PDE1AP54750 535 aa11.12□□□□□ -0.63
CAPN3-206ENST00000397163 KIAA2012Q0VF49 1180 aa11.12□□□□□ -0.63
CAPN3-206ENST00000397163 TSHZ3Q63HK5 1081 aa11.11□□□□□ -0.63
CAPN3-206ENST00000397163 SLC4A10Q6U841 1118 aa11.11□□□□□ -0.63
CAPN3-206ENST00000397163 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.11□□□□□ -0.63
CAPN3-206ENST00000397163 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.11□□□□□ -0.63
CAPN3-206ENST00000397163 KNDC1Q76NI1 1749 aa11.11□□□□□ -0.63
CAPN3-206ENST00000397163 COG3Q96JB2 828 aa11.11□□□□□ -0.63
CAPN3-206ENST00000397163 PDIA4P13667 645 aaKnown RBP11.11□□□□□ -0.63
CAPN3-206ENST00000397163 GDPD2Q9HCC8 539 aa11.11□□□□□ -0.63
CAPN3-206ENST00000397163 PIK3C2BO00750 1634 aa11.11□□□□□ -0.63
CAPN3-206ENST00000397163 PHF14O94880 888 aa11.1□□□□□ -0.63
CAPN3-206ENST00000397163 ANO2Q9NQ90 1003 aa11.1□□□□□ -0.63
CAPN3-206ENST00000397163 TMEM51Q9NW97 253 aa11.1□□□□□ -0.63
CAPN3-206ENST00000397163 SLC4A2P04920 1241 aa11.09□□□□□ -0.63
CAPN3-206ENST00000397163 MCM10Q7L590 875 aa11.09□□□□□ -0.63
CAPN3-206ENST00000397163 EXOC6BQ9Y2D4 811 aa11.09□□□□□ -0.63
CAPN3-206ENST00000397163 PTPRCP08575 1304 aa11.09□□□□□ -0.63
CAPN3-206ENST00000397163 TRIM6-TRIM34B2RNG4 842 aa11.09□□□□□ -0.63
CAPN3-206ENST00000397163 U2AF2P26368 475 aaKnown RBP eCLIP11.09□□□□□ -0.63
CAPN3-206ENST00000397163 CUL4AQ13619 759 aa11.09□□□□□ -0.63
CAPN3-206ENST00000397163 AEBP1Q8IUX7 1158 aa11.09□□□□□ -0.63
CAPN3-206ENST00000397163 MYRIPQ8NFW9 859 aa11.09□□□□□ -0.63
CAPN3-206ENST00000397163 RILPL2Q969X0 211 aa11.09□□□□□ -0.63
CAPN3-206ENST00000397163 ESYT1Q9BSJ8 1104 aa11.09□□□□□ -0.63
CAPN3-206ENST00000397163 PALD1Q9ULE6 856 aa11.09□□□□□ -0.63
CAPN3-206ENST00000397163 SULT6B1Q6IMI4 303 aa11.09□□□□□ -0.63
CAPN3-206ENST00000397163 OSBPL3Q9H4L5 887 aa11.09□□□□□ -0.63
CAPN3-206ENST00000397163 ADAMTSL3P82987 1691 aa11.08□□□□□ -0.64
CAPN3-206ENST00000397163 RGS12O14924 1447 aa11.08□□□□□ -0.64
CAPN3-206ENST00000397163 GADD45BO75293 160 aaPredicted RBP11.08□□□□□ -0.64
CAPN3-206ENST00000397163 UPF3BQ9BZI7 483 aaKnown RBP11.08□□□□□ -0.64
CAPN3-206ENST00000397163 KIF20BQ96Q89 1820 aa11.08□□□□□ -0.64
CAPN3-206ENST00000397163 CPSF1Q10570 1443 aaKnown RBP11.08□□□□□ -0.64
CAPN3-206ENST00000397163 F6X3S4 739 aa11.08□□□□□ -0.64
CAPN3-206ENST00000397163 CHL1O00533 1208 aa11.08□□□□□ -0.64
CAPN3-206ENST00000397163 INTS4Q96HW7 963 aaKnown RBP11.08□□□□□ -0.64
CAPN3-206ENST00000397163 TTC12Q9H892 705 aaPredicted RBP11.08□□□□□ -0.64
CAPN3-206ENST00000397163 CDK12Q9NYV4 1490 aaPredicted RBP11.08□□□□□ -0.64
CAPN3-206ENST00000397163 ZNF771Q7L3S4 317 aaPredicted RBP11.07□□□□□ -0.64
CAPN3-206ENST00000397163 ATP7BP35670 1465 aa11.07□□□□□ -0.64
CAPN3-206ENST00000397163 SPATA31D1Q6ZQQ2 1576 aa11.07□□□□□ -0.64
CAPN3-206ENST00000397163 USP25Q9UHP3 1055 aa11.07□□□□□ -0.64
CAPN3-206ENST00000397163 CLTCQ00610 1675 aaKnown RBP11.07□□□□□ -0.64
CAPN3-206ENST00000397163 FER1L4A9Z1Z3 1794 aa11.07□□□□□ -0.64
CAPN3-206ENST00000397163 FBXO31Q5XUX0 539 aaPredicted RBP11.07□□□□□ -0.64
CAPN3-206ENST00000397163 USP48Q86UV5 1035 aa11.07□□□□□ -0.64
CAPN3-206ENST00000397163 PREX1Q8TCU6 1659 aa11.07□□□□□ -0.64
CAPN3-206ENST00000397163 MIS18AQ9NYP9 233 aa11.06□□□□□ -0.64
CAPN3-206ENST00000397163 EDC4Q6P2E9 1401 aaKnown RBP11.06□□□□□ -0.64
CAPN3-206ENST00000397163 WDR33Q9C0J8 1336 aaKnown RBP11.06□□□□□ -0.64
CAPN3-206ENST00000397163 GNAI2P04899 355 aa11.06□□□□□ -0.64
CAPN3-206ENST00000397163 MX1P20591 662 aa11.06□□□□□ -0.64
CAPN3-206ENST00000397163 ANAPC15P60006 121 aa11.06□□□□□ -0.64
CAPN3-206ENST00000397163 PLCB2Q00722 1185 aa11.06□□□□□ -0.64
CAPN3-206ENST00000397163 FAM184AQ8NB25 1140 aa11.06□□□□□ -0.64
CAPN3-206ENST00000397163 GTPBP4Q9BZE4 634 aaKnown RBP11.06□□□□□ -0.64
CAPN3-206ENST00000397163 LRRCC1Q9C099 1032 aa11.06□□□□□ -0.64
CAPN3-206ENST00000397163 BCL2L12Q9HB09 334 aa11.06□□□□□ -0.64
CAPN3-206ENST00000397163 AATKQ6ZMQ8 1374 aa11.06□□□□□ -0.64
CAPN3-206ENST00000397163 CHMLP26374 656 aa11.05□□□□□ -0.64
CAPN3-206ENST00000397163 CCT4P50991 539 aaKnown RBP11.05□□□□□ -0.64
CAPN3-206ENST00000397163 G2E3Q7L622 706 aa11.05□□□□□ -0.64
CAPN3-206ENST00000397163 MAP2P11137 1827 aaKnown RBP11.05□□□□□ -0.64
CAPN3-206ENST00000397163 LETM1O95202 739 aaPredicted RBP11.05□□□□□ -0.64
CAPN3-206ENST00000397163 WASLO00401 505 aaPredicted RBP11.05□□□□□ -0.64
CAPN3-206ENST00000397163 KIF20AO95235 890 aa11.05□□□□□ -0.64
CAPN3-206ENST00000397163 NOLC1Q14978 699 aaKnown RBP eCLIP11.05□□□□□ -0.64
CAPN3-206ENST00000397163 UVSSAQ2YD98 709 aa11.05□□□□□ -0.64
CAPN3-206ENST00000397163 PDCL2Q8N4E4 241 aa11.05□□□□□ -0.64
CAPN3-206ENST00000397163 KIAA0232Q92628 1395 aa11.05□□□□□ -0.64
CAPN3-206ENST00000397163 NCKAP5LQ9HCH0 1330 aa11.04□□□□□ -0.64
CAPN3-206ENST00000397163 ADCY5O95622 1261 aa11.04□□□□□ -0.64
CAPN3-206ENST00000397163 CDK11BP21127 795 aaKnown RBP11.04□□□□□ -0.64
CAPN3-206ENST00000397163 EIF4A2Q14240 407 aaKnown RBP11.04□□□□□ -0.64
CAPN3-206ENST00000397163 CCDC183Q5T5S1 534 aa11.04□□□□□ -0.64
CAPN3-206ENST00000397163 PIBF1Q8WXW3 757 aa11.04□□□□□ -0.64
CAPN3-206ENST00000397163 KIF3AQ9Y496 699 aa11.04□□□□□ -0.64
CAPN3-206ENST00000397163 ALKQ9UM73 1620 aa11.04□□□□□ -0.64
CAPN3-206ENST00000397163 HCLS1P14317 486 aaPredicted RBP11.03□□□□□ -0.64
CAPN3-206ENST00000397163 CEBPAP49715 358 aaPredicted RBP11.03□□□□□ -0.64
CAPN3-206ENST00000397163 HMGN5P82970 282 aaKnown RBP11.03□□□□□ -0.64
CAPN3-206ENST00000397163 NUDT16Q96DE0 195 aaKnown RBP11.03□□□□□ -0.64
CAPN3-206ENST00000397163 PRIMPOLQ96LW4 560 aa11.03□□□□□ -0.64
CAPN3-206ENST00000397163 TSPYL4Q9UJ04 414 aa11.03□□□□□ -0.64
CAPN3-206ENST00000397163 RIMS1Q86UR5 1692 aaKnown RBP11.03□□□□□ -0.64
CAPN3-206ENST00000397163 KDM4FA0A1W2PPD8 638 aa11.03□□□□□ -0.64
CAPN3-206ENST00000397163 CHMP4AQ9BY43 222 aa11.03□□□□□ -0.64
CAPN3-206ENST00000397163 SRCIN1Q9C0H9 1055 aa11.03□□□□□ -0.64
CAPN3-206ENST00000397163 CNPY2Q9Y2B0 182 aa11.02□□□□□ -0.64
CAPN3-206ENST00000397163 CCDC61Q9Y6R9 512 aa11.02□□□□□ -0.64
CAPN3-206ENST00000397163 RTF1Q92541 710 aaKnown RBP11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms