RNA–Protein interactions for RNA: ENST00000396629.6

SCFD1-202, Transcript of sec1 family domain containing 1, humanhuman

TSL 2 BASIC

Gene SCFD1, Length 2,021 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-202ENST00000396629 GNPATO15228 680 aa11.86□□□□□ -0.51
SCFD1-202ENST00000396629 RBM46Q8TBY0 533 aaKnown RBP11.86□□□□□ -0.51
SCFD1-202ENST00000396629 NMRK2Q9NPI5 230 aa11.86□□□□□ -0.51
SCFD1-202ENST00000396629 BCS1LQ9Y276 419 aa11.85□□□□□ -0.51
SCFD1-202ENST00000396629 ANKRD26Q9UPS8 1709 aa11.85□□□□□ -0.51
SCFD1-202ENST00000396629 C4AP0C0L4 1744 aa11.84□□□□□ -0.51
SCFD1-202ENST00000396629 JMYQ8N9B5 988 aa11.84□□□□□ -0.51
SCFD1-202ENST00000396629 ASAP1Q9ULH1 1129 aa11.84□□□□□ -0.51
SCFD1-202ENST00000396629 SPG7Q9UQ90 795 aa11.84□□□□□ -0.51
SCFD1-202ENST00000396629 A0A0G2JLW4 131 aa11.84□□□□□ -0.51
SCFD1-202ENST00000396629 ATP6V1AP38606 617 aa11.84□□□□□ -0.51
SCFD1-202ENST00000396629 ARHGAP27Q6ZUM4 889 aa11.84□□□□□ -0.51
SCFD1-202ENST00000396629 KLRG1Q96E93 195 aa11.84□□□□□ -0.51
SCFD1-202ENST00000396629 TMOD3Q9NYL9 352 aa11.84□□□□□ -0.51
SCFD1-202ENST00000396629 COL5A3P25940 1745 aaPredicted RBP11.83□□□□□ -0.51
SCFD1-202ENST00000396629 NLGN1Q8N2Q7 840 aa11.83□□□□□ -0.52
SCFD1-202ENST00000396629 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.83□□□□□ -0.522e-8■■■□□ 14.9
SCFD1-202ENST00000396629 TONSLQ96HA7 1378 aa11.83□□□□□ -0.52
SCFD1-202ENST00000396629 TMF1P82094 1093 aa11.82□□□□□ -0.52
SCFD1-202ENST00000396629 FSTL1Q12841 308 aa11.82□□□□□ -0.52
SCFD1-202ENST00000396629 ATG3Q9NT62 314 aa11.82□□□□□ -0.52
SCFD1-202ENST00000396629 DPEP1P16444 411 aa11.82□□□□□ -0.52
SCFD1-202ENST00000396629 TRAPPC3LQ5T215 181 aa11.82□□□□□ -0.52
SCFD1-202ENST00000396629 COL13A1Q5TAT6 717 aaPredicted RBP11.82□□□□□ -0.52
SCFD1-202ENST00000396629 CCDC87Q9NVE4 849 aa11.82□□□□□ -0.52
SCFD1-202ENST00000396629 SBF1O95248 1867 aa11.82□□□□□ -0.52
SCFD1-202ENST00000396629 KDRP35968 1356 aa11.82□□□□□ -0.52
SCFD1-202ENST00000396629 PLEKHG2Q9H7P9 1386 aa11.82□□□□□ -0.52
SCFD1-202ENST00000396629 FCHSD2O94868 740 aa11.81□□□□□ -0.52
SCFD1-202ENST00000396629 KCNA3P22001 575 aa11.81□□□□□ -0.52
SCFD1-202ENST00000396629 RTCBQ9Y3I0 505 aaKnown RBP11.81□□□□□ -0.52
SCFD1-202ENST00000396629 EMILIN1Q9Y6C2 1016 aa11.81□□□□□ -0.52
SCFD1-202ENST00000396629 TNRC6CQ9HCJ0 1690 aaKnown RBP11.81□□□□□ -0.52
SCFD1-202ENST00000396629 PHKG2P15735 406 aa11.81□□□□□ -0.52
SCFD1-202ENST00000396629 RC3H1Q5TC82 1133 aaKnown RBP11.81□□□□□ -0.52
SCFD1-202ENST00000396629 C9orf131Q5VYM1 1079 aa11.81□□□□□ -0.52
SCFD1-202ENST00000396629 IFNL2Q8IZJ0 200 aa11.81□□□□□ -0.52
SCFD1-202ENST00000396629 MYH14Q7Z406 1995 aaKnown RBP11.8□□□□□ -0.52
SCFD1-202ENST00000396629 HTRA3P83110 453 aa11.8□□□□□ -0.52
SCFD1-202ENST00000396629 C16orf71Q8IYS4 520 aaPredicted RBP11.8□□□□□ -0.52
SCFD1-202ENST00000396629 ARHGEF1Q92888 912 aaKnown RBP11.8□□□□□ -0.52
SCFD1-202ENST00000396629 SLC4A9Q96Q91 983 aa11.8□□□□□ -0.52
SCFD1-202ENST00000396629 GYS1P13807 737 aa11.79□□□□□ -0.52
SCFD1-202ENST00000396629 EYA1Q99502 592 aa11.79□□□□□ -0.52
SCFD1-202ENST00000396629 WASHC2AQ641Q2 1341 aa11.79□□□□□ -0.52
SCFD1-202ENST00000396629 PARP3Q9Y6F1 533 aa11.79□□□□□ -0.52
SCFD1-202ENST00000396629 KCPQ6ZWJ8 1503 aa11.79□□□□□ -0.52
SCFD1-202ENST00000396629 CNTNAP4Q9C0A0 1308 aa11.78□□□□□ -0.52
SCFD1-202ENST00000396629 RPS6KA4O75676 772 aa11.78□□□□□ -0.52
SCFD1-202ENST00000396629 DCAF5Q96JK2 942 aa11.78□□□□□ -0.52
SCFD1-202ENST00000396629 KDM2BQ8NHM5 1336 aa11.78□□□□□ -0.52
SCFD1-202ENST00000396629 CARD14Q9BXL6 1004 aa11.77□□□□□ -0.52
SCFD1-202ENST00000396629 PIM2Q9P1W9 311 aa11.77□□□□□ -0.52
SCFD1-202ENST00000396629 PRELPP51888 382 aa11.77□□□□□ -0.53
SCFD1-202ENST00000396629 ERVV-2B6SEH9 535 aa11.76□□□□□ -0.53
SCFD1-202ENST00000396629 RFC4P35249 363 aa11.76□□□□□ -0.53
SCFD1-202ENST00000396629 TNS4Q8IZW8 715 aa11.76□□□□□ -0.53
SCFD1-202ENST00000396629 RRAGCQ9HB90 399 aa11.76□□□□□ -0.53
SCFD1-202ENST00000396629 DALRD3Q5D0E6 543 aaKnown RBP11.76□□□□□ -0.53
SCFD1-202ENST00000396629 RBM42Q9BTD8 480 aaKnown RBP11.76□□□□□ -0.53
SCFD1-202ENST00000396629 RNF181Q9P0P0 153 aa11.76□□□□□ -0.53
SCFD1-202ENST00000396629 PPM1GO15355 546 aaPredicted RBP11.75□□□□□ -0.53
SCFD1-202ENST00000396629 CAPN15O75808 1086 aa11.74□□□□□ -0.53
SCFD1-202ENST00000396629 CDCA8Q53HL2 280 aa11.74□□□□□ -0.53
SCFD1-202ENST00000396629 SMC1BQ8NDV3 1235 aa11.74□□□□□ -0.53
SCFD1-202ENST00000396629 ADAMTS7Q9UKP4 1686 aa11.74□□□□□ -0.53
SCFD1-202ENST00000396629 POLKQ9UBT6 870 aa11.74□□□□□ -0.53
SCFD1-202ENST00000396629 HSP90AB1P08238 724 aaKnown RBP11.73□□□□□ -0.53
SCFD1-202ENST00000396629 TJP1Q07157 1748 aa11.73□□□□□ -0.53
SCFD1-202ENST00000396629 CCDC88AQ3V6T2 1871 aa11.73□□□□□ -0.53
SCFD1-202ENST00000396629 DDR1Q08345 913 aa11.72□□□□□ -0.53
SCFD1-202ENST00000396629 EIF4A2Q14240 407 aaKnown RBP11.72□□□□□ -0.53
SCFD1-202ENST00000396629 ZC3H4Q9UPT8 1303 aaKnown RBP11.72□□□□□ -0.53
SCFD1-202ENST00000396629 KDM6AO15550 1401 aaPredicted RBP11.72□□□□□ -0.53
SCFD1-202ENST00000396629 AFDNP55196 1824 aaKnown RBP11.72□□□□□ -0.53
SCFD1-202ENST00000396629 USP42Q9H9J4 1324 aaKnown RBP11.72□□□□□ -0.53
SCFD1-202ENST00000396629 FKBP8Q14318 412 aa11.72□□□□□ -0.53
SCFD1-202ENST00000396629 SRP68Q9UHB9 627 aaKnown RBP11.72□□□□□ -0.53
SCFD1-202ENST00000396629 DLEC1Q9Y238 1755 aa11.71□□□□□ -0.53
SCFD1-202ENST00000396629 TM4SF1P30408 202 aa11.71□□□□□ -0.53
SCFD1-202ENST00000396629 CHRNA5P30532 468 aa11.71□□□□□ -0.53
SCFD1-202ENST00000396629 CRKLP46109 303 aaKnown RBP11.71□□□□□ -0.53
SCFD1-202ENST00000396629 NRXN2Q9P2S2 1712 aa11.7□□□□□ -0.54
SCFD1-202ENST00000396629 POLRMTO00411 1230 aaKnown RBP11.7□□□□□ -0.54
SCFD1-202ENST00000396629 HSPA1AP0DMV8 641 aaKnown RBP11.7□□□□□ -0.54
SCFD1-202ENST00000396629 HSPA1BP0DMV9 641 aaKnown RBP11.7□□□□□ -0.54
SCFD1-202ENST00000396629 CABP4P57796 275 aa11.7□□□□□ -0.54
SCFD1-202ENST00000396629 TIAM2Q8IVF5 1701 aa11.7□□□□□ -0.54
SCFD1-202ENST00000396629 PLEKHO1Q53GL0 409 aaPredicted RBP11.69□□□□□ -0.54
SCFD1-202ENST00000396629 SCN11AQ9UI33 1791 aa11.69□□□□□ -0.54
SCFD1-202ENST00000396629 GLTPD2A6NH11 291 aa11.69□□□□□ -0.54
SCFD1-202ENST00000396629 VEGFAP15692 232 aaPredicted RBP11.69□□□□□ -0.54
SCFD1-202ENST00000396629 PTCD1O75127 700 aaKnown RBP11.68□□□□□ -0.54
SCFD1-202ENST00000396629 RASSF7Q02833 373 aa11.68□□□□□ -0.54
SCFD1-202ENST00000396629 AMOTQ4VCS5 1084 aa11.68□□□□□ -0.54
SCFD1-202ENST00000396629 ZNF530Q6P9A1 599 aaPredicted RBP11.68□□□□□ -0.54
SCFD1-202ENST00000396629 LMNB1P20700 586 aa11.67□□□□□ -0.54
SCFD1-202ENST00000396629 INTS5Q6P9B9 1019 aaKnown RBP11.67□□□□□ -0.54
SCFD1-202ENST00000396629 DICER1Q9UPY3 1922 aaKnown RBP11.67□□□□□ -0.54
SCFD1-202ENST00000396629 MTHFSP49914 203 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 96.5 ms