RNA–Protein interactions for RNA: ENST00000394768.6

SYNE2-205, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 11,095 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-205ENST00000394768 PRDM11Q9NQV5 511 aa8.64□□□□□ -1.03
SYNE2-205ENST00000394768 PRKRIP1Q9H875 184 aaPredicted RBP8.64□□□□□ -1.03
SYNE2-205ENST00000394768 RAI14Q9P0K7 980 aa8.64□□□□□ -1.03
SYNE2-205ENST00000394768 BLOC1S2Q6QNY1 142 aa8.64□□□□□ -1.03
SYNE2-205ENST00000394768 CACNA2D4Q7Z3S7 1137 aa8.64□□□□□ -1.03
SYNE2-205ENST00000394768 GIMAP7Q8NHV1 300 aa8.64□□□□□ -1.03
SYNE2-205ENST00000394768 POTEB2H3BUK9 544 aa8.64□□□□□ -1.03
SYNE2-205ENST00000394768 IQCA1Q86XH1 822 aa8.64□□□□□ -1.03
SYNE2-205ENST00000394768 SPECC1LQ69YQ0 1117 aa8.64□□□□□ -1.03
SYNE2-205ENST00000394768 ANKLE2Q86XL3 938 aa8.64□□□□□ -1.03
SYNE2-205ENST00000394768 RGS22Q8NE09 1264 aa8.64□□□□□ -1.03
SYNE2-205ENST00000394768 CTCFLQ8NI51 663 aaPredicted RBP8.64□□□□□ -1.03
SYNE2-205ENST00000394768 UPF3BQ9BZI7 483 aaKnown RBP8.64□□□□□ -1.03
SYNE2-205ENST00000394768 MAP3K9P80192 1104 aa8.64□□□□□ -1.03
SYNE2-205ENST00000394768 EHBP1Q8NDI1 1231 aa8.64□□□□□ -1.03
SYNE2-205ENST00000394768 ANKIB1Q9P2G1 1089 aa8.64□□□□□ -1.03
SYNE2-205ENST00000394768 VIMP08670 466 aaKnown RBP8.64□□□□□ -1.03
SYNE2-205ENST00000394768 NCBP1Q09161 790 aaKnown RBP8.63□□□□□ -1.03
SYNE2-205ENST00000394768 LUZP1Q86V48 1076 aa8.63□□□□□ -1.03
SYNE2-205ENST00000394768 HMOX1P09601 288 aa8.63□□□□□ -1.03
SYNE2-205ENST00000394768 CASTP20810 708 aaKnown RBP8.63□□□□□ -1.03
SYNE2-205ENST00000394768 PAXIP1Q6ZW49 1069 aaPredicted RBP8.63□□□□□ -1.03
SYNE2-205ENST00000394768 KIAA1524Q8TCG1 905 aa8.63□□□□□ -1.03
SYNE2-205ENST00000394768 SPATA32Q96LK8 384 aa8.63□□□□□ -1.03
SYNE2-205ENST00000394768 SLC52A1Q9NWF4 448 aa8.63□□□□□ -1.03
SYNE2-205ENST00000394768 KIF5CO60282 957 aa8.63□□□□□ -1.03
SYNE2-205ENST00000394768 CNGA1P29973 690 aa8.63□□□□□ -1.03
SYNE2-205ENST00000394768 KIF5BP33176 963 aa8.63□□□□□ -1.03
SYNE2-205ENST00000394768 FMNL3Q8IVF7 1028 aa8.63□□□□□ -1.03
SYNE2-205ENST00000394768 RPGRQ92834 1020 aaKnown RBP8.63□□□□□ -1.03
SYNE2-205ENST00000394768 EPRSP07814 1512 aaKnown RBP8.63□□□□□ -1.03
SYNE2-205ENST00000394768 DHX37Q8IY37 1157 aaKnown RBP8.63□□□□□ -1.03
SYNE2-205ENST00000394768 IFIT1P09914 478 aaKnown RBP8.63□□□□□ -1.03
SYNE2-205ENST00000394768 USP5P45974 858 aa8.63□□□□□ -1.03
SYNE2-205ENST00000394768 DZIP1Q86YF9 867 aaKnown RBP8.63□□□□□ -1.03
SYNE2-205ENST00000394768 MKNK2Q9HBH9 465 aa8.63□□□□□ -1.03
SYNE2-205ENST00000394768 ATAD2Q6PL18 1390 aa8.63□□□□□ -1.03
SYNE2-205ENST00000394768 IFFO1Q0D2I5 559 aa8.63□□□□□ -1.03
SYNE2-205ENST00000394768 PRPHP41219 470 aa8.63□□□□□ -1.03
SYNE2-205ENST00000394768 FKBP4Q02790 459 aaKnown RBP eCLIP8.63□□□□□ -1.03
SYNE2-205ENST00000394768 LARP1BQ659C4 914 aaKnown RBP8.63□□□□□ -1.03
SYNE2-205ENST00000394768 GOLGA6L9A6NEM1 432 aa8.62□□□□□ -1.03
SYNE2-205ENST00000394768 FIBPO43427 364 aa8.62□□□□□ -1.03
SYNE2-205ENST00000394768 HAUS2Q9NVX0 235 aa8.62□□□□□ -1.03
SYNE2-205ENST00000394768 CCDC178Q5BJE1 867 aa8.62□□□□□ -1.03
SYNE2-205ENST00000394768 TMCO3Q6UWJ1 677 aa8.62□□□□□ -1.03
SYNE2-205ENST00000394768 TXNDC2Q86VQ3 553 aa8.62□□□□□ -1.03
SYNE2-205ENST00000394768 GOLIM4O00461 696 aa8.62□□□□□ -1.03
SYNE2-205ENST00000394768 HLA-DOAP06340 250 aa8.62□□□□□ -1.03
SYNE2-205ENST00000394768 TWISTNBQ3B726 338 aaPredicted RBP8.62□□□□□ -1.03
SYNE2-205ENST00000394768 DMRT2Q9Y5R5 561 aa8.62□□□□□ -1.03
SYNE2-205ENST00000394768 MAP3K12Q12852 859 aa8.62□□□□□ -1.03
SYNE2-205ENST00000394768 ERICH3Q5RHP9 1530 aa8.62□□□□□ -1.03
SYNE2-205ENST00000394768 SPTY2D1Q68D10 685 aaPredicted RBP8.62□□□□□ -1.03
SYNE2-205ENST00000394768 PKNOX2Q96KN3 472 aa8.61□□□□□ -1.03
SYNE2-205ENST00000394768 ANKRD50Q9ULJ7 1429 aa8.61□□□□□ -1.03
SYNE2-205ENST00000394768 FANCIQ9NVI1 1328 aa8.61□□□□□ -1.03
SYNE2-205ENST00000394768 CTAGE5O15320 804 aa8.61□□□□□ -1.03
SYNE2-205ENST00000394768 RAB11FIP3O75154 756 aa8.61□□□□□ -1.03
SYNE2-205ENST00000394768 PDE3AQ14432 1141 aa8.61□□□□□ -1.03
SYNE2-205ENST00000394768 CEP135Q66GS9 1140 aa8.61□□□□□ -1.03
SYNE2-205ENST00000394768 CCDC174Q6PII3 467 aa8.61□□□□□ -1.03
SYNE2-205ENST00000394768 CCDC117Q8IWD4 279 aaPredicted RBP8.61□□□□□ -1.03
SYNE2-205ENST00000394768 POLR3DP05423 398 aaPredicted RBP8.61□□□□□ -1.03
SYNE2-205ENST00000394768 CCDC175P0C221 793 aa8.61□□□□□ -1.03
SYNE2-205ENST00000394768 PAFAH1B1P43034 410 aa8.61□□□□□ -1.03
SYNE2-205ENST00000394768 ZNF530Q6P9A1 599 aaPredicted RBP8.61□□□□□ -1.03
SYNE2-205ENST00000394768 BAG3O95817 575 aa8.61□□□□□ -1.03
SYNE2-205ENST00000394768 MSANTD4Q8NCY6 345 aa8.61□□□□□ -1.03
SYNE2-205ENST00000394768 FAM177BA6PVY3 158 aa8.61□□□□□ -1.03
SYNE2-205ENST00000394768 TTF1Q15361 905 aaPredicted RBP8.61□□□□□ -1.03
SYNE2-205ENST00000394768 GTPBP4Q9BZE4 634 aaKnown RBP8.61□□□□□ -1.03
SYNE2-205ENST00000394768 BTBD11A6QL63 1104 aa8.61□□□□□ -1.03
SYNE2-205ENST00000394768 CAVIN2O95810 425 aa8.61□□□□□ -1.03
SYNE2-205ENST00000394768 ERMNQ8TAM6 284 aa8.61□□□□□ -1.03
SYNE2-205ENST00000394768 CCDC102AQ96A19 550 aa8.61□□□□□ -1.03
SYNE2-205ENST00000394768 CALML4Q96GE6 196 aa8.61□□□□□ -1.03
SYNE2-205ENST00000394768 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.6□□□□□ -1.03
SYNE2-205ENST00000394768 SFPQP23246 707 aaKnown RBP eCLIP8.6□□□□□ -1.03
SYNE2-205ENST00000394768 NFKBIBQ15653 356 aa8.6□□□□□ -1.03
SYNE2-205ENST00000394768 KANK3Q6NY19 840 aa8.6□□□□□ -1.03
SYNE2-205ENST00000394768 EFCAB5A4FU69 1503 aa8.6□□□□□ -1.03
SYNE2-205ENST00000394768 GSTO1P78417 241 aa8.6□□□□□ -1.03
SYNE2-205ENST00000394768 STMN4Q9H169 189 aaPredicted RBP8.6□□□□□ -1.03
SYNE2-205ENST00000394768 NUP62CLQ9H1M0 184 aa8.6□□□□□ -1.03
SYNE2-205ENST00000394768 NOC2LQ9Y3T9 749 aaKnown RBP8.6□□□□□ -1.03
SYNE2-205ENST00000394768 CCDC141Q6ZP82 1450 aa8.6□□□□□ -1.03
SYNE2-205ENST00000394768 RPGRIP1LQ68CZ1 1315 aa8.6□□□□□ -1.03
SYNE2-205ENST00000394768 FAM114A2Q9NRY5 505 aa8.6□□□□□ -1.03
SYNE2-205ENST00000394768 SLC5A1P13866 664 aa8.6□□□□□ -1.03
SYNE2-205ENST00000394768 PDE4BQ07343 736 aa8.6□□□□□ -1.03
SYNE2-205ENST00000394768 AACSQ86V21 672 aa8.6□□□□□ -1.03
SYNE2-205ENST00000394768 TEX13AQ9BXU3 409 aaPredicted RBP8.6□□□□□ -1.03
SYNE2-205ENST00000394768 EHBP1L1Q8N3D4 1523 aa8.6□□□□□ -1.03
SYNE2-205ENST00000394768 NCOA2Q15596 1464 aa8.6□□□□□ -1.03
SYNE2-205ENST00000394768 LDHCP07864 332 aa8.6□□□□□ -1.03
SYNE2-205ENST00000394768 AMOTQ4VCS5 1084 aa8.6□□□□□ -1.03
SYNE2-205ENST00000394768 PRPF31Q8WWY3 499 aaKnown RBP8.6□□□□□ -1.03
SYNE2-205ENST00000394768 NAPBQ9H115 298 aa8.6□□□□□ -1.03
SYNE2-205ENST00000394768 TMOD3Q9NYL9 352 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms