RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 PI4KAP2A4QPH2 592 aa13.84□□□□□ -0.19
TCOF1-203ENST00000394269 EIF4A1P60842 406 aaKnown RBP13.84□□□□□ -0.19
TCOF1-203ENST00000394269 PI4KAP1Q8N8J0 262 aa13.84□□□□□ -0.19
TCOF1-203ENST00000394269 LRRFIP2Q9Y608 721 aaKnown RBP13.84□□□□□ -0.19
TCOF1-203ENST00000394269 NALCNQ8IZF0 1738 aa13.84□□□□□ -0.19
TCOF1-203ENST00000394269 C1orf167Q5SNV9 1468 aa13.84□□□□□ -0.19
TCOF1-203ENST00000394269 HMMRO75330 724 aa13.84□□□□□ -0.19
TCOF1-203ENST00000394269 PIP4K2AP48426 406 aaPredicted RBP13.84□□□□□ -0.19
TCOF1-203ENST00000394269 AMOTQ4VCS5 1084 aa13.84□□□□□ -0.19
TCOF1-203ENST00000394269 RNMTO43148 476 aaKnown RBP13.83□□□□□ -0.19
TCOF1-203ENST00000394269 DEKP35659 375 aaKnown RBP13.83□□□□□ -0.2
TCOF1-203ENST00000394269 RTL1A6NKG5 1358 aa13.83□□□□□ -0.2
TCOF1-203ENST00000394269 FMN2Q9NZ56 1722 aa13.83□□□□□ -0.2
TCOF1-203ENST00000394269 NFATC2IPQ8NCF5 419 aa13.83□□□□□ -0.2
TCOF1-203ENST00000394269 ADAMTSL3P82987 1691 aa13.83□□□□□ -0.2
TCOF1-203ENST00000394269 KIF24Q5T7B8 1368 aa13.82□□□□□ -0.2
TCOF1-203ENST00000394269 CHD2O14647 1828 aaKnown RBP13.82□□□□□ -0.2
TCOF1-203ENST00000394269 NUTM2BA6NNL0 878 aaPredicted RBP13.82□□□□□ -0.2
TCOF1-203ENST00000394269 NUTM2EB1AL46 878 aaPredicted RBP13.82□□□□□ -0.2
TCOF1-203ENST00000394269 UBTFL1P0CB47 393 aaPredicted RBP13.82□□□□□ -0.2
TCOF1-203ENST00000394269 NUTM2AQ8IVF1 878 aaPredicted RBP13.82□□□□□ -0.2
TCOF1-203ENST00000394269 STRN4Q9NRL3 753 aa13.82□□□□□ -0.2
TCOF1-203ENST00000394269 PNMA6EA0A0J9YXQ4 647 aa13.82□□□□□ -0.2
TCOF1-203ENST00000394269 MYL6BP14649 208 aa13.82□□□□□ -0.2
TCOF1-203ENST00000394269 PLEKHM2Q8IWE5 1019 aa13.82□□□□□ -0.2
TCOF1-203ENST00000394269 TATP17735 454 aaPredicted RBP13.81□□□□□ -0.2
TCOF1-203ENST00000394269 TBC1D9Q6ZT07 1266 aa13.81□□□□□ -0.2
TCOF1-203ENST00000394269 PRDM11Q9NQV5 511 aa13.81□□□□□ -0.2
TCOF1-203ENST00000394269 FOXD4L1Q9NU39 408 aa13.81□□□□□ -0.2
TCOF1-203ENST00000394269 NPHP3Q7Z494 1330 aa13.81□□□□□ -0.2
TCOF1-203ENST00000394269 ZNF335Q9H4Z2 1342 aaPredicted RBP13.81□□□□□ -0.2
TCOF1-203ENST00000394269 NFKBIBQ15653 356 aa13.81□□□□□ -0.2
TCOF1-203ENST00000394269 TBC1D2Q9BYX2 928 aa13.81□□□□□ -0.2
TCOF1-203ENST00000394269 IL1RAPL2Q9NP60 686 aa13.81□□□□□ -0.2
TCOF1-203ENST00000394269 ERBB3P21860 1342 aa13.81□□□□□ -0.2
TCOF1-203ENST00000394269 BMP2KLQ5H9B9 411 aa13.81□□□□□ -0.2
TCOF1-203ENST00000394269 PROSER3Q2NL68 480 aa13.8□□□□□ -0.2
TCOF1-203ENST00000394269 SRCIN1Q9C0H9 1055 aa13.8□□□□□ -0.2
TCOF1-203ENST00000394269 GNAI3P08754 354 aa13.8□□□□□ -0.2
TCOF1-203ENST00000394269 RGS12O14924 1447 aa13.8□□□□□ -0.2
TCOF1-203ENST00000394269 FRAT2O75474 233 aaPredicted RBP13.8□□□□□ -0.2
TCOF1-203ENST00000394269 GSPT1P15170 499 aaKnown RBP13.79□□□□□ -0.2
TCOF1-203ENST00000394269 TOM1L2Q6ZVM7 507 aa13.79□□□□□ -0.2
TCOF1-203ENST00000394269 USP44Q9H0E7 712 aa13.79□□□□□ -0.2
TCOF1-203ENST00000394269 NBPF7P0C2Y1 421 aaPredicted RBP13.79□□□□□ -0.2
TCOF1-203ENST00000394269 SURF6O75683 361 aaKnown RBP13.78□□□□□ -0.2
TCOF1-203ENST00000394269 HSP90AA1P07900 732 aaKnown RBP13.78□□□□□ -0.2
TCOF1-203ENST00000394269 TRIM6-TRIM34B2RNG4 842 aa13.78□□□□□ -0.2
TCOF1-203ENST00000394269 DDX54Q8TDD1 881 aaKnown RBP13.78□□□□□ -0.2
TCOF1-203ENST00000394269 C9orf78Q9NZ63 289 aaPredicted RBP13.78□□□□□ -0.2
TCOF1-203ENST00000394269 OS9Q13438 667 aaPredicted RBP13.78□□□□□ -0.2
TCOF1-203ENST00000394269 RILPL2Q969X0 211 aa13.78□□□□□ -0.2
TCOF1-203ENST00000394269 RBM42Q9BTD8 480 aaKnown RBP13.78□□□□□ -0.2
TCOF1-203ENST00000394269 SLAIN2Q9P270 581 aa13.78□□□□□ -0.2
TCOF1-203ENST00000394269 BRINP3Q76B58 766 aa13.77□□□□□ -0.2
TCOF1-203ENST00000394269 DNAAF4Q8WXU2 420 aa13.77□□□□□ -0.2
TCOF1-203ENST00000394269 SRGAP3O43295 1099 aa13.77□□□□□ -0.21
TCOF1-203ENST00000394269 CWF19L2Q2TBE0 894 aaKnown RBP13.77□□□□□ -0.21
TCOF1-203ENST00000394269 MAP3K2Q9Y2U5 619 aa13.77□□□□□ -0.21
TCOF1-203ENST00000394269 EVA1CP58658 441 aa13.77□□□□□ -0.21
TCOF1-203ENST00000394269 JARID2Q92833 1246 aaPredicted RBP13.77□□□□□ -0.21
TCOF1-203ENST00000394269 SPG7Q9UQ90 795 aa13.77□□□□□ -0.21
TCOF1-203ENST00000394269 CDC45O75419 566 aa13.76□□□□□ -0.21
TCOF1-203ENST00000394269 GIGYF1O75420 1035 aaPredicted RBP13.76□□□□□ -0.21
TCOF1-203ENST00000394269 PPP1R42Q7Z4L9 355 aa13.76□□□□□ -0.21
TCOF1-203ENST00000394269 DBF4Q9UBU7 674 aaPredicted RBP13.76□□□□□ -0.21
TCOF1-203ENST00000394269 MAP4K4O95819 1239 aaPredicted RBP13.76□□□□□ -0.21
TCOF1-203ENST00000394269 SDSP20132 328 aa13.76□□□□□ -0.21
TCOF1-203ENST00000394269 NUTM1Q86Y26 1132 aa13.76□□□□□ -0.21
TCOF1-203ENST00000394269 HSCBQ8IWL3 235 aa13.76□□□□□ -0.21
TCOF1-203ENST00000394269 TTC5Q8N0Z6 440 aa13.76□□□□□ -0.21
TCOF1-203ENST00000394269 ARXQ96QS3 562 aa13.76□□□□□ -0.21
TCOF1-203ENST00000394269 NWD1Q149M9 1564 aa13.76□□□□□ -0.21
TCOF1-203ENST00000394269 TTC22Q5TAA0 569 aa13.76□□□□□ -0.21
TCOF1-203ENST00000394269 LRRCC1Q9C099 1032 aa13.76□□□□□ -0.21
TCOF1-203ENST00000394269 ZNF330Q9Y3S2 320 aaPredicted RBP13.76□□□□□ -0.21
TCOF1-203ENST00000394269 RGPD1P0DJD0 1748 aa13.75□□□□□ -0.21
TCOF1-203ENST00000394269 CEMIPQ8WUJ3 1361 aa13.75□□□□□ -0.21
TCOF1-203ENST00000394269 ATP8B2P98198 1209 aa13.74□□□□□ -0.21
TCOF1-203ENST00000394269 RIC3Q7Z5B4 369 aa13.74□□□□□ -0.21
TCOF1-203ENST00000394269 BABAM1Q9NWV8 329 aa13.74□□□□□ -0.21
TCOF1-203ENST00000394269 PXDNQ92626 1479 aa13.74□□□□□ -0.21
TCOF1-203ENST00000394269 ATP10DQ9P241 1426 aa13.74□□□□□ -0.21
TCOF1-203ENST00000394269 NFAT5O94916 1531 aa13.74□□□□□ -0.21
TCOF1-203ENST00000394269 ZNF790Q6PG37 636 aa13.74□□□□□ -0.21
TCOF1-203ENST00000394269 IFNL2Q8IZJ0 200 aa13.74□□□□□ -0.21
TCOF1-203ENST00000394269 MST1RQ04912 1400 aa13.74□□□□□ -0.21
TCOF1-203ENST00000394269 HSP90AB1P08238 724 aaKnown RBP13.74□□□□□ -0.21
TCOF1-203ENST00000394269 CABP4P57796 275 aa13.74□□□□□ -0.21
TCOF1-203ENST00000394269 PTCD1O75127 700 aaKnown RBP13.73□□□□□ -0.21
TCOF1-203ENST00000394269 ZNF496Q96IT1 587 aaPredicted RBP13.73□□□□□ -0.21
TCOF1-203ENST00000394269 PHKG2P15735 406 aa13.73□□□□□ -0.21
TCOF1-203ENST00000394269 CCDC9Q9Y3X0 531 aaKnown RBP13.73□□□□□ -0.21
TCOF1-203ENST00000394269 SPATA31A3Q5VYP0 1347 aa13.73□□□□□ -0.21
TCOF1-203ENST00000394269 CYP27B1O15528 508 aa13.73□□□□□ -0.21
TCOF1-203ENST00000394269 CASC1Q6TDU7 716 aa13.73□□□□□ -0.21
TCOF1-203ENST00000394269 USP16Q9Y5T5 823 aa13.73□□□□□ -0.21
TCOF1-203ENST00000394269 UBAP1LF5GYI3 381 aa13.72□□□□□ -0.21
TCOF1-203ENST00000394269 PDE1AP54750 535 aa13.72□□□□□ -0.21
TCOF1-203ENST00000394269 SLC52A2Q9HAB3 445 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 99.1 ms