RNA–Protein interactions for RNA: ENST00000381089.7

VCX3A-201, Transcript of variable charge X-linked 3A, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VCX3A, Length 995 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-201ENST00000381089 EIF4A2Q14240 407 aaKnown RBP22.01■■□□□ 1.11
VCX3A-201ENST00000381089 ATG3Q9NT62 314 aa22.01■■□□□ 1.11
VCX3A-201ENST00000381089 ZNF526Q8TF50 670 aaPredicted RBP22■■□□□ 1.11
VCX3A-201ENST00000381089 WWC3Q9ULE0 1092 aa22■■□□□ 1.11
VCX3A-201ENST00000381089 RTCBQ9Y3I0 505 aaKnown RBP22■■□□□ 1.11
VCX3A-201ENST00000381089 ERVV-2B6SEH9 535 aa21.99■■□□□ 1.11
VCX3A-201ENST00000381089 TRAPPC3LQ5T215 181 aa21.99■■□□□ 1.11
VCX3A-201ENST00000381089 CEP350Q5VT06 3117 aa21.99■■□□□ 1.11
VCX3A-201ENST00000381089 MMP10P09238 476 aa21.98■■□□□ 1.11
VCX3A-201ENST00000381089 DCAF5Q96JK2 942 aa21.98■■□□□ 1.11
VCX3A-201ENST00000381089 PLEKHO1Q53GL0 409 aaPredicted RBP21.97■■□□□ 1.11
VCX3A-201ENST00000381089 NLGN1Q8N2Q7 840 aa21.97■■□□□ 1.11
VCX3A-201ENST00000381089 RBM42Q9BTD8 480 aaKnown RBP21.97■■□□□ 1.11
VCX3A-201ENST00000381089 CLSPNQ9HAW4 1339 aa21.97■■□□□ 1.11
VCX3A-201ENST00000381089 ADRA2BP18089 450 aa21.96■■□□□ 1.11
VCX3A-201ENST00000381089 TGFB2P61812 414 aa21.95■■□□□ 1.1
VCX3A-201ENST00000381089 AMOTQ4VCS5 1084 aa21.95■■□□□ 1.1
VCX3A-201ENST00000381089 KDRP35968 1356 aa21.95■■□□□ 1.1
VCX3A-201ENST00000381089 RC3H1Q5TC82 1133 aaKnown RBP21.94■■□□□ 1.1
VCX3A-201ENST00000381089 ZNF831Q5JPB2 1677 aa21.94■■□□□ 1.1
VCX3A-201ENST00000381089 HSPA6P17066 643 aa21.93■■□□□ 1.1
VCX3A-201ENST00000381089 RFC4P35249 363 aa21.93■■□□□ 1.1
VCX3A-201ENST00000381089 CABP4P57796 275 aa21.93■■□□□ 1.1
VCX3A-201ENST00000381089 ZNF530Q6P9A1 599 aaPredicted RBP21.93■■□□□ 1.1
VCX3A-201ENST00000381089 CCDC87Q9NVE4 849 aa21.93■■□□□ 1.1
VCX3A-201ENST00000381089 CNTNAP4Q9C0A0 1308 aa21.92■■□□□ 1.1
VCX3A-201ENST00000381089 CICQ96RK0 1608 aaPredicted RBP21.91■■□□□ 1.1
VCX3A-201ENST00000381089 PXDNLA1KZ92 1463 aa21.91■■□□□ 1.1
VCX3A-201ENST00000381089 EIF4G2P78344 907 aaKnown RBP eCLIP21.91■■□□□ 1.1
VCX3A-201ENST00000381089 C1orf141Q5JVX7 400 aa21.91■■□□□ 1.1
VCX3A-201ENST00000381089 KIF13BQ9NQT8 1826 aa21.9■■□□□ 1.1
VCX3A-201ENST00000381089 ARHGEF1Q92888 912 aaKnown RBP21.9■■□□□ 1.1
VCX3A-201ENST00000381089 PANK3Q9H999 370 aa21.9■■□□□ 1.1
VCX3A-201ENST00000381089 BCS1LQ9Y276 419 aa21.9■■□□□ 1.1
VCX3A-201ENST00000381089 PARP3Q9Y6F1 533 aa21.9■■□□□ 1.1
VCX3A-201ENST00000381089 RPS6KA4O75676 772 aa21.89■■□□□ 1.09
VCX3A-201ENST00000381089 MTHFSP49914 203 aa21.89■■□□□ 1.09
VCX3A-201ENST00000381089 C10orf71Q711Q0 1435 aa21.89■■□□□ 1.09
VCX3A-201ENST00000381089 MORC1Q86VD1 984 aa21.88■■□□□ 1.09
VCX3A-201ENST00000381089 SLC4A9Q96Q91 983 aa21.88■■□□□ 1.09
VCX3A-201ENST00000381089 COL5A3P25940 1745 aaPredicted RBP21.88■■□□□ 1.09
VCX3A-201ENST00000381089 A0A0G2JLW4 131 aa21.87■■□□□ 1.09
VCX3A-201ENST00000381089 GYS1P13807 737 aa21.87■■□□□ 1.09
VCX3A-201ENST00000381089 IFFO2Q5TF58 517 aa21.87■■□□□ 1.09
VCX3A-201ENST00000381089 KDM6AO15550 1401 aaPredicted RBP21.87■■□□□ 1.09
VCX3A-201ENST00000381089 PCGF6Q9BYE7 350 aa21.86■■□□□ 1.09
VCX3A-201ENST00000381089 N4BP2Q86UW6 1770 aaPredicted RBP21.86■■□□□ 1.09
VCX3A-201ENST00000381089 C4AP0C0L4 1744 aa21.86■■□□□ 1.09
VCX3A-201ENST00000381089 PTCD1O75127 700 aaKnown RBP21.85■■□□□ 1.09
VCX3A-201ENST00000381089 ARHGAP27Q6ZUM4 889 aa21.85■■□□□ 1.09
VCX3A-201ENST00000381089 KIF3CO14782 793 aa21.84■■□□□ 1.09
VCX3A-201ENST00000381089 FCHSD2O94868 740 aa21.84■■□□□ 1.09
VCX3A-201ENST00000381089 HSPA5P11021 654 aaKnown RBP21.84■■□□□ 1.09
VCX3A-201ENST00000381089 KIAA1551Q9HCM1 1747 aa21.83■■□□□ 1.09
VCX3A-201ENST00000381089 DPEP1P16444 411 aa21.83■■□□□ 1.09
VCX3A-201ENST00000381089 CRKLP46109 303 aaKnown RBP21.82■■□□□ 1.08
VCX3A-201ENST00000381089 SULT6B1Q6IMI4 303 aa21.82■■□□□ 1.08
VCX3A-201ENST00000381089 AEBP1Q8IUX7 1158 aa21.82■■□□□ 1.08
VCX3A-201ENST00000381089 NFATC2IPQ8NCF5 419 aa21.82■■□□□ 1.08
VCX3A-201ENST00000381089 KNSTRNQ9Y448 316 aa21.82■■□□□ 1.08
VCX3A-201ENST00000381089 MYH14Q7Z406 1995 aaKnown RBP21.8■■□□□ 1.08
VCX3A-201ENST00000381089 TOMM70O94826 608 aa21.8■■□□□ 1.08
VCX3A-201ENST00000381089 PIM2Q9P1W9 311 aa21.8■■□□□ 1.08
VCX3A-201ENST00000381089 APLP1P51693 650 aa21.79■■□□□ 1.08
VCX3A-201ENST00000381089 USP42Q9H9J4 1324 aaKnown RBP21.79■■□□□ 1.08
VCX3A-201ENST00000381089 DALRD3Q5D0E6 543 aaKnown RBP21.77■■□□□ 1.08
VCX3A-201ENST00000381089 AKAP4Q5JQC9 854 aa21.77■■□□□ 1.08
VCX3A-201ENST00000381089 BRCA1P38398 1863 aaKnown RBP21.77■■□□□ 1.08
VCX3A-201ENST00000381089 ZPR1O75312 459 aa21.76■■□□□ 1.07
VCX3A-201ENST00000381089 IL13P35225 146 aa21.76■■□□□ 1.07
VCX3A-201ENST00000381089 SRP68Q9UHB9 627 aaKnown RBP21.76■■□□□ 1.07
VCX3A-201ENST00000381089 SCN11AQ9UI33 1791 aa21.75■■□□□ 1.07
VCX3A-201ENST00000381089 FKBP8Q14318 412 aa21.75■■□□□ 1.07
VCX3A-201ENST00000381089 C16orf71Q8IYS4 520 aaPredicted RBP21.75■■□□□ 1.07
VCX3A-201ENST00000381089 ARFGEF1Q9Y6D6 1849 aa21.75■■□□□ 1.07
VCX3A-201ENST00000381089 KCNA3P22001 575 aa21.74■■□□□ 1.07
VCX3A-201ENST00000381089 C9orf131Q5VYM1 1079 aa21.74■■□□□ 1.07
VCX3A-201ENST00000381089 TJP1Q07157 1748 aa21.74■■□□□ 1.07
VCX3A-201ENST00000381089 SLC52A2Q9HAB3 445 aa21.73■■□□□ 1.07
VCX3A-201ENST00000381089 DDR1Q08345 913 aa21.72■■□□□ 1.07
VCX3A-201ENST00000381089 INTS5Q6P9B9 1019 aaKnown RBP21.72■■□□□ 1.07
VCX3A-201ENST00000381089 NMRK2Q9NPI5 230 aa21.72■■□□□ 1.07
VCX3A-201ENST00000381089 KDM2BQ8NHM5 1336 aa21.72■■□□□ 1.07
VCX3A-201ENST00000381089 POLRMTO00411 1230 aaKnown RBP21.7■■□□□ 1.06
VCX3A-201ENST00000381089 DNAJC10Q8IXB1 793 aa21.7■■□□□ 1.06
VCX3A-201ENST00000381089 RBM46Q8TBY0 533 aaKnown RBP21.7■■□□□ 1.06
VCX3A-201ENST00000381089 USPL1Q5W0Q7 1092 aa21.69■■□□□ 1.06
VCX3A-201ENST00000381089 RNF181Q9P0P0 153 aa21.69■■□□□ 1.06
VCX3A-201ENST00000381089 RNMTO43148 476 aaKnown RBP21.68■■□□□ 1.06
VCX3A-201ENST00000381089 TM4SF1P30408 202 aa21.68■■□□□ 1.06
VCX3A-201ENST00000381089 CHRNA5P30532 468 aa21.68■■□□□ 1.06
VCX3A-201ENST00000381089 SOS1Q07889 1333 aaPredicted RBP21.68■■□□□ 1.06
VCX3A-201ENST00000381089 MRC1P22897 1456 aa21.67■■□□□ 1.06
VCX3A-201ENST00000381089 AMER1Q5JTC6 1135 aaPredicted RBP21.67■■□□□ 1.06
VCX3A-201ENST00000381089 CCER1Q8TC90 406 aaPredicted RBP21.67■■□□□ 1.06
VCX3A-201ENST00000381089 LGR6Q9HBX8 967 aa21.67■■□□□ 1.06
VCX3A-201ENST00000381089 HMOX1P09601 288 aa21.66■■□□□ 1.06
VCX3A-201ENST00000381089 CYP19A1P11511 503 aaPredicted RBP21.66■■□□□ 1.06
VCX3A-201ENST00000381089 NARFQ9UHQ1 456 aa21.66■■□□□ 1.06
VCX3A-201ENST00000381089 COL15A1P39059 1388 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms