RNA–Protein interactions for RNA: ENST00000375271.4

PTCH1-202, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-202ENST00000375271 HSP90AB1P08238 724 aaKnown RBP19.46■□□□□ 0.71
PTCH1-202ENST00000375271 TNNT2P45379 298 aaPredicted RBP19.46■□□□□ 0.71
PTCH1-202ENST00000375271 TRAPPC3LQ5T215 181 aa19.46■□□□□ 0.71
PTCH1-202ENST00000375271 RBM42Q9BTD8 480 aaKnown RBP19.46■□□□□ 0.71
PTCH1-202ENST00000375271 NLGN1Q8N2Q7 840 aa19.45■□□□□ 0.7
PTCH1-202ENST00000375271 BCS1LQ9Y276 419 aa19.45■□□□□ 0.7
PTCH1-202ENST00000375271 ITPK1Q13572 414 aa19.44■□□□□ 0.7
PTCH1-202ENST00000375271 CCDC87Q9NVE4 849 aa19.44■□□□□ 0.7
PTCH1-202ENST00000375271 RFC4P35249 363 aa19.43■□□□□ 0.7
PTCH1-202ENST00000375271 TGFB2P61812 414 aa19.42■□□□□ 0.7
PTCH1-202ENST00000375271 ATG3Q9NT62 314 aa19.42■□□□□ 0.7
PTCH1-202ENST00000375271 PARP3Q9Y6F1 533 aa19.42■□□□□ 0.7
PTCH1-202ENST00000375271 CICQ96RK0 1608 aaPredicted RBP19.42■□□□□ 0.7
PTCH1-202ENST00000375271 ADRA2BP18089 450 aa19.41■□□□□ 0.7
PTCH1-202ENST00000375271 PLEKHO1Q53GL0 409 aaPredicted RBP19.41■□□□□ 0.7
PTCH1-202ENST00000375271 ARHGAP27Q6ZUM4 889 aa19.41■□□□□ 0.7
PTCH1-202ENST00000375271 POLKQ9UBT6 870 aa19.41■□□□□ 0.7
PTCH1-202ENST00000375271 PLEKHG2Q9H7P9 1386 aa19.41■□□□□ 0.7
PTCH1-202ENST00000375271 ERVV-2B6SEH9 535 aa19.4■□□□□ 0.7
PTCH1-202ENST00000375271 FCHSD2O94868 740 aa19.4■□□□□ 0.7
PTCH1-202ENST00000375271 CABP4P57796 275 aa19.4■□□□□ 0.7
PTCH1-202ENST00000375271 EIF4A2Q14240 407 aaKnown RBP19.4■□□□□ 0.7
PTCH1-202ENST00000375271 DCAF5Q96JK2 942 aa19.4■□□□□ 0.7
PTCH1-202ENST00000375271 PXDNLA1KZ92 1463 aa19.4■□□□□ 0.7
PTCH1-202ENST00000375271 C1orf141Q5JVX7 400 aa19.39■□□□□ 0.69
PTCH1-202ENST00000375271 ZNF530Q6P9A1 599 aaPredicted RBP19.39■□□□□ 0.69
PTCH1-202ENST00000375271 C16orf71Q8IYS4 520 aaPredicted RBP19.39■□□□□ 0.69
PTCH1-202ENST00000375271 A0A0G2JLW4 131 aa19.38■□□□□ 0.69
PTCH1-202ENST00000375271 APLP1P51693 650 aa19.38■□□□□ 0.69
PTCH1-202ENST00000375271 N4BP2Q86UW6 1770 aaPredicted RBP19.38■□□□□ 0.69
PTCH1-202ENST00000375271 KIF3CO14782 793 aa19.37■□□□□ 0.69
PTCH1-202ENST00000375271 AMOTQ4VCS5 1084 aa19.37■□□□□ 0.69
PTCH1-202ENST00000375271 RC3H1Q5TC82 1133 aaKnown RBP19.37■□□□□ 0.69
PTCH1-202ENST00000375271 C10orf71Q711Q0 1435 aa19.36■□□□□ 0.69
PTCH1-202ENST00000375271 KDRP35968 1356 aa19.36■□□□□ 0.69
PTCH1-202ENST00000375271 CNTNAP4Q9C0A0 1308 aa19.36■□□□□ 0.69
PTCH1-202ENST00000375271 ARHGEF1Q92888 912 aaKnown RBP19.36■□□□□ 0.69
PTCH1-202ENST00000375271 KIF13BQ9NQT8 1826 aa19.36■□□□□ 0.69
PTCH1-202ENST00000375271 C4AP0C0L4 1744 aa19.35■□□□□ 0.69
PTCH1-202ENST00000375271 TOMM70O94826 608 aa19.35■□□□□ 0.69
PTCH1-202ENST00000375271 ZNF831Q5JPB2 1677 aa19.34■□□□□ 0.69
PTCH1-202ENST00000375271 PTCD1O75127 700 aaKnown RBP19.34■□□□□ 0.69
PTCH1-202ENST00000375271 RPS6KA4O75676 772 aa19.34■□□□□ 0.69
PTCH1-202ENST00000375271 DPEP1P16444 411 aa19.34■□□□□ 0.69
PTCH1-202ENST00000375271 MTHFSP49914 203 aa19.34■□□□□ 0.69
PTCH1-202ENST00000375271 TRIM26Q12899 539 aaPredicted RBP19.34■□□□□ 0.69
PTCH1-202ENST00000375271 TIMELESSQ9UNS1 1208 aa19.34■□□□□ 0.69
PTCH1-202ENST00000375271 GYS1P13807 737 aa19.33■□□□□ 0.68
PTCH1-202ENST00000375271 COL5A3P25940 1745 aaPredicted RBP19.32■□□□□ 0.68
PTCH1-202ENST00000375271 PIM2Q9P1W9 311 aa19.32■□□□□ 0.68
PTCH1-202ENST00000375271 KDM2BQ8NHM5 1336 aa19.3■□□□□ 0.68
PTCH1-202ENST00000375271 DALRD3Q5D0E6 543 aaKnown RBP19.3■□□□□ 0.68
PTCH1-202ENST00000375271 C9orf131Q5VYM1 1079 aa19.3■□□□□ 0.68
PTCH1-202ENST00000375271 MORC1Q86VD1 984 aa19.3■□□□□ 0.68
PTCH1-202ENST00000375271 KIAA1551Q9HCM1 1747 aa19.29■□□□□ 0.68
PTCH1-202ENST00000375271 CRKLP46109 303 aaKnown RBP19.29■□□□□ 0.68
PTCH1-202ENST00000375271 SLC4A9Q96Q91 983 aa19.29■□□□□ 0.68
PTCH1-202ENST00000375271 NMRK2Q9NPI5 230 aa19.29■□□□□ 0.68
PTCH1-202ENST00000375271 KDM6AO15550 1401 aaPredicted RBP19.28■□□□□ 0.68
PTCH1-202ENST00000375271 ZPR1O75312 459 aa19.28■□□□□ 0.68
PTCH1-202ENST00000375271 EIF4G2P78344 907 aaKnown RBP eCLIP19.27■□□□□ 0.68
PTCH1-202ENST00000375271 PANK3Q9H999 370 aa19.27■□□□□ 0.68
PTCH1-202ENST00000375271 RNF181Q9P0P0 153 aa19.27■□□□□ 0.68
PTCH1-202ENST00000375271 ARFGEF1Q9Y6D6 1849 aa19.26■□□□□ 0.67
PTCH1-202ENST00000375271 SULT6B1Q6IMI4 303 aa19.26■□□□□ 0.67
PTCH1-202ENST00000375271 NFATC2IPQ8NCF5 419 aa19.26■□□□□ 0.67
PTCH1-202ENST00000375271 RBM46Q8TBY0 533 aaKnown RBP19.26■□□□□ 0.67
PTCH1-202ENST00000375271 USP42Q9H9J4 1324 aaKnown RBP19.25■□□□□ 0.67
PTCH1-202ENST00000375271 BRCA1P38398 1863 aaKnown RBP19.25■□□□□ 0.67
PTCH1-202ENST00000375271 SRP68Q9UHB9 627 aaKnown RBP19.25■□□□□ 0.67
PTCH1-202ENST00000375271 AEBP1Q8IUX7 1158 aa19.24■□□□□ 0.67
PTCH1-202ENST00000375271 KNSTRNQ9Y448 316 aa19.24■□□□□ 0.67
PTCH1-202ENST00000375271 FKBP8Q14318 412 aa19.23■□□□□ 0.67
PTCH1-202ENST00000375271 PCGF6Q9BYE7 350 aa19.23■□□□□ 0.67
PTCH1-202ENST00000375271 MYH14Q7Z406 1995 aaKnown RBP19.23■□□□□ 0.67
PTCH1-202ENST00000375271 FSTL1Q12841 308 aa19.22■□□□□ 0.67
PTCH1-202ENST00000375271 CLSPNQ9HAW4 1339 aa19.22■□□□□ 0.67
PTCH1-202ENST00000375271 WDR90Q96KV7 1748 aa19.21■□□□□ 0.67
PTCH1-202ENST00000375271 KCPQ6ZWJ8 1503 aa19.2■□□□□ 0.66
PTCH1-202ENST00000375271 CHRNA5P30532 468 aa19.2■□□□□ 0.66
PTCH1-202ENST00000375271 DDR1Q08345 913 aa19.2■□□□□ 0.66
PTCH1-202ENST00000375271 AKAP4Q5JQC9 854 aa19.2■□□□□ 0.66
PTCH1-202ENST00000375271 TJP1Q07157 1748 aa19.2■□□□□ 0.66
PTCH1-202ENST00000375271 HSPA5P11021 654 aaKnown RBP19.19■□□□□ 0.66
PTCH1-202ENST00000375271 KCNA3P22001 575 aa19.19■□□□□ 0.66
PTCH1-202ENST00000375271 USPL1Q5W0Q7 1092 aa19.19■□□□□ 0.66
PTCH1-202ENST00000375271 RRAGCQ9HB90 399 aa19.19■□□□□ 0.66
PTCH1-202ENST00000375271 TNRC6CQ9HCJ0 1690 aaKnown RBP19.19■□□□□ 0.66
PTCH1-202ENST00000375271 SCN11AQ9UI33 1791 aa19.19■□□□□ 0.66
PTCH1-202ENST00000375271 DNAJC10Q8IXB1 793 aa19.18■□□□□ 0.66
PTCH1-202ENST00000375271 SLC52A2Q9HAB3 445 aa19.18■□□□□ 0.66
PTCH1-202ENST00000375271 POLRMTO00411 1230 aaKnown RBP19.17■□□□□ 0.66
PTCH1-202ENST00000375271 SMC1BQ8NDV3 1235 aa19.17■□□□□ 0.66
PTCH1-202ENST00000375271 INTS5Q6P9B9 1019 aaKnown RBP19.16■□□□□ 0.66
PTCH1-202ENST00000375271 DNAJC5GQ8N7S2 189 aa19.16■□□□□ 0.66
PTCH1-202ENST00000375271 KLRG1Q96E93 195 aa19.16■□□□□ 0.66
PTCH1-202ENST00000375271 ZC3H4Q9UPT8 1303 aaKnown RBP19.16■□□□□ 0.66
PTCH1-202ENST00000375271 COL15A1P39059 1388 aa19.16■□□□□ 0.66
PTCH1-202ENST00000375271 NPM2Q86SE8 214 aaKnown RBP19.15■□□□□ 0.66
PTCH1-202ENST00000375271 SOS1Q07889 1333 aaPredicted RBP19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms