RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 FOXD4L6Q3SYB3 417 aaPredicted RBP10.45□□□□□ -0.74
SYNE1-209ENST00000367257 FOXD4L3Q6VB84 417 aaPredicted RBP10.45□□□□□ -0.74
SYNE1-209ENST00000367257 NUP62CLQ9H1M0 184 aa10.45□□□□□ -0.74
SYNE1-209ENST00000367257 AKNAQ7Z591 1439 aa10.45□□□□□ -0.74
SYNE1-209ENST00000367257 ERBINQ96RT1 1412 aa10.45□□□□□ -0.74
SYNE1-209ENST00000367257 IMMTQ16891 758 aaKnown RBP10.45□□□□□ -0.74
SYNE1-209ENST00000367257 ALDH1L2Q3SY69 923 aa10.45□□□□□ -0.74
SYNE1-209ENST00000367257 SAMD9LQ8IVG5 1584 aa10.45□□□□□ -0.74
SYNE1-209ENST00000367257 SPDYE4A6NLX3 237 aa10.45□□□□□ -0.74
SYNE1-209ENST00000367257 CETN2P41208 172 aa10.45□□□□□ -0.74
SYNE1-209ENST00000367257 PRIMPOLQ96LW4 560 aa10.45□□□□□ -0.74
SYNE1-209ENST00000367257 DEPDC5O75140 1603 aa10.44□□□□□ -0.74
SYNE1-209ENST00000367257 XPCQ01831 940 aaPredicted RBP10.44□□□□□ -0.74
SYNE1-209ENST00000367257 SCAND2PQ9GZW5 306 aaPredicted RBP10.44□□□□□ -0.74
SYNE1-209ENST00000367257 FCHSD2O94868 740 aa10.44□□□□□ -0.74
SYNE1-209ENST00000367257 MTHFSP49914 203 aa10.44□□□□□ -0.74
SYNE1-209ENST00000367257 CHD1LQ86WJ1 897 aa10.44□□□□□ -0.74
SYNE1-209ENST00000367257 FGFR1OPO95684 399 aaKnown RBP10.44□□□□□ -0.74
SYNE1-209ENST00000367257 SEPT7Q16181 437 aaKnown RBP10.44□□□□□ -0.74
SYNE1-209ENST00000367257 BLOC1S2Q6QNY1 142 aa10.44□□□□□ -0.74
SYNE1-209ENST00000367257 MICALCLQ6ZW33 695 aa10.44□□□□□ -0.74
SYNE1-209ENST00000367257 FILIP1Q7Z7B0 1213 aa10.44□□□□□ -0.74
SYNE1-209ENST00000367257 ZNF397Q8NF99 534 aaPredicted RBP10.44□□□□□ -0.74
SYNE1-209ENST00000367257 DNMT1P26358 1616 aaKnown RBP10.44□□□□□ -0.74
SYNE1-209ENST00000367257 PRG4Q92954 1404 aaPredicted RBP10.43□□□□□ -0.74
SYNE1-209ENST00000367257 UVSSAQ2YD98 709 aa10.43□□□□□ -0.74
SYNE1-209ENST00000367257 TTC39AQ5SRH9 613 aa10.43□□□□□ -0.74
SYNE1-209ENST00000367257 DNAAF4Q8WXU2 420 aa10.43□□□□□ -0.74
SYNE1-209ENST00000367257 SLC26A8Q96RN1 970 aa10.43□□□□□ -0.74
SYNE1-209ENST00000367257 ZNF287Q9HBT7 754 aa10.43□□□□□ -0.74
SYNE1-209ENST00000367257 NSD2O96028 1365 aa10.43□□□□□ -0.74
SYNE1-209ENST00000367257 TRIM21P19474 475 aaKnown RBP10.43□□□□□ -0.74
SYNE1-209ENST00000367257 TUBB4BP68371 445 aa10.43□□□□□ -0.74
SYNE1-209ENST00000367257 MAP3K11Q16584 847 aa10.43□□□□□ -0.74
SYNE1-209ENST00000367257 TTLL5Q6EMB2 1281 aa10.43□□□□□ -0.74
SYNE1-209ENST00000367257 C9orf84Q5VXU9 1444 aa10.43□□□□□ -0.74
SYNE1-209ENST00000367257 CCDC69A6NI79 296 aa10.43□□□□□ -0.74
SYNE1-209ENST00000367257 KRT18P05783 430 aaKnown RBP10.43□□□□□ -0.74
SYNE1-209ENST00000367257 ATF3P18847 181 aa10.43□□□□□ -0.74
SYNE1-209ENST00000367257 GSDMDP57764 484 aa10.43□□□□□ -0.74
SYNE1-209ENST00000367257 SOGA3Q5TF21 947 aa10.43□□□□□ -0.74
SYNE1-209ENST00000367257 TROQ12816 1431 aaPredicted RBP10.42□□□□□ -0.74
SYNE1-209ENST00000367257 MNAT1P51948 309 aa10.42□□□□□ -0.74
SYNE1-209ENST00000367257 TAF4BQ92750 862 aa10.42□□□□□ -0.74
SYNE1-209ENST00000367257 SPATA32Q96LK8 384 aa10.42□□□□□ -0.74
SYNE1-209ENST00000367257 INO80Q9ULG1 1556 aaPredicted RBP10.42□□□□□ -0.74
SYNE1-209ENST00000367257 POTEJP0CG39 1038 aa10.42□□□□□ -0.74
SYNE1-209ENST00000367257 EXOSC9Q06265 439 aaKnown RBP10.42□□□□□ -0.74
SYNE1-209ENST00000367257 LARP1BQ659C4 914 aaKnown RBP10.42□□□□□ -0.74
SYNE1-209ENST00000367257 UPF3BQ9BZI7 483 aaKnown RBP10.42□□□□□ -0.74
SYNE1-209ENST00000367257 RASSF4Q9H2L5 321 aa10.42□□□□□ -0.74
SYNE1-209ENST00000367257 ANO10Q9NW15 660 aa10.42□□□□□ -0.74
SYNE1-209ENST00000367257 ARHGEF5Q12774 1597 aa10.42□□□□□ -0.74
SYNE1-209ENST00000367257 GBP2P32456 591 aaPredicted RBP10.42□□□□□ -0.74
SYNE1-209ENST00000367257 DDX12PQ92771 950 aa10.42□□□□□ -0.74
SYNE1-209ENST00000367257 SHTN1A0MZ66 631 aa10.42□□□□□ -0.74
SYNE1-209ENST00000367257 KDM5CP41229 1560 aa10.41□□□□□ -0.74
SYNE1-209ENST00000367257 FIBPO43427 364 aa10.41□□□□□ -0.74
SYNE1-209ENST00000367257 TATP17735 454 aaPredicted RBP10.41□□□□□ -0.74
SYNE1-209ENST00000367257 TMCO3Q6UWJ1 677 aa10.41□□□□□ -0.74
SYNE1-209ENST00000367257 UBXN4Q92575 508 aa10.41□□□□□ -0.74
SYNE1-209ENST00000367257 CCDC196A0A1B0GTZ2 297 aa10.41□□□□□ -0.74
SYNE1-209ENST00000367257 PPP1R12BO60237 982 aaPredicted RBP10.41□□□□□ -0.74
SYNE1-209ENST00000367257 KRT222Q8N1A0 295 aa10.41□□□□□ -0.74
SYNE1-209ENST00000367257 PDRG1Q9NUG6 133 aa10.41□□□□□ -0.74
SYNE1-209ENST00000367257 SPG7Q9UQ90 795 aa10.41□□□□□ -0.74
SYNE1-209ENST00000367257 ME1P48163 572 aa10.41□□□□□ -0.74
SYNE1-209ENST00000367257 ZFYVE27Q5T4F4 411 aa10.41□□□□□ -0.74
SYNE1-209ENST00000367257 CCDC183Q5T5S1 534 aa10.41□□□□□ -0.74
SYNE1-209ENST00000367257 GOLGA6L10A0A0M3HER8 536 aa10.41□□□□□ -0.74
SYNE1-209ENST00000367257 EPB41L2O43491 1005 aaKnown RBP10.41□□□□□ -0.74
SYNE1-209ENST00000367257 PRKAR2BP31323 418 aa10.41□□□□□ -0.74
SYNE1-209ENST00000367257 NF2P35240 595 aa10.4□□□□□ -0.74
SYNE1-209ENST00000367257 MYCBPQ99417 103 aaPredicted RBP10.4□□□□□ -0.74
SYNE1-209ENST00000367257 DENND4BO75064 1496 aaPredicted RBP10.4□□□□□ -0.74
SYNE1-209ENST00000367257 TMCO5BA8MYB1 307 aa10.4□□□□□ -0.74
SYNE1-209ENST00000367257 CENPHQ9H3R5 247 aa10.4□□□□□ -0.74
SYNE1-209ENST00000367257 CCDC27Q2M243 656 aa10.4□□□□□ -0.74
SYNE1-209ENST00000367257 NUTM2DQ5VT03 806 aaPredicted RBP10.4□□□□□ -0.74
SYNE1-209ENST00000367257 GOLIM4O00461 696 aa10.4□□□□□ -0.75
SYNE1-209ENST00000367257 MPHOSPH10O00566 681 aaKnown RBP10.4□□□□□ -0.75
SYNE1-209ENST00000367257 FMNL2Q96PY5 1086 aa10.4□□□□□ -0.75
SYNE1-209ENST00000367257 DDX19AQ9NUU7 478 aaKnown RBP10.4□□□□□ -0.75
SYNE1-209ENST00000367257 NOB1Q9ULX3 412 aaKnown RBP10.4□□□□□ -0.75
SYNE1-209ENST00000367257 SETSIPP0DME0 302 aa10.39□□□□□ -0.75
SYNE1-209ENST00000367257 VPS36Q86VN1 386 aa10.39□□□□□ -0.75
SYNE1-209ENST00000367257 KIF18AQ8NI77 898 aa10.39□□□□□ -0.75
SYNE1-209ENST00000367257 SKIDA1Q1XH10 827 aa10.39□□□□□ -0.75
SYNE1-209ENST00000367257 TTC31Q49AM3 519 aaPredicted RBP10.39□□□□□ -0.75
SYNE1-209ENST00000367257 HDGFL1Q5TGJ6 251 aa10.39□□□□□ -0.75
SYNE1-209ENST00000367257 PLXNC1O60486 1568 aa10.39□□□□□ -0.75
SYNE1-209ENST00000367257 GLRX3O76003 335 aaKnown RBP10.39□□□□□ -0.75
SYNE1-209ENST00000367257 CRACR2AQ9BSW2 395 aa10.39□□□□□ -0.75
SYNE1-209ENST00000367257 AKAP2Q9Y2D5 859 aa10.39□□□□□ -0.75
SYNE1-209ENST00000367257 MROH1Q8NDA8 1641 aa10.39□□□□□ -0.75
SYNE1-209ENST00000367257 ARHGAP29Q52LW3 1261 aa10.39□□□□□ -0.75
SYNE1-209ENST00000367257 TICAM2Q86XR7 235 aa10.39□□□□□ -0.75
SYNE1-209ENST00000367257 GGNBP2Q9H3C7 697 aa10.39□□□□□ -0.75
SYNE1-209ENST00000367257 MRVI1Q9Y6F6 885 aa10.39□□□□□ -0.75
SYNE1-209ENST00000367257 SFPQP23246 707 aaKnown RBP eCLIP10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms