RNA–Protein interactions for RNA: ENST00000367255.9

SYNE1-207, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SYNE1, Length 27,748 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-207ENST00000367255 ZSCAN12O43309 604 aa4.39□□□□□ -1.71
SYNE1-207ENST00000367255 PLEKHG2Q9H7P9 1386 aa4.39□□□□□ -1.71
SYNE1-207ENST00000367255 NFKBIBQ15653 356 aa4.39□□□□□ -1.71
SYNE1-207ENST00000367255 CCDC40Q4G0X9 1142 aa4.39□□□□□ -1.71
SYNE1-207ENST00000367255 CEP57L1Q8IYX8 460 aa4.39□□□□□ -1.71
SYNE1-207ENST00000367255 JAKMIP2Q96AA8 810 aa4.39□□□□□ -1.71
SYNE1-207ENST00000367255 HDAC9Q9UKV0 1011 aa4.39□□□□□ -1.71
SYNE1-207ENST00000367255 RUFY1Q96T51 708 aa4.39□□□□□ -1.71
SYNE1-207ENST00000367255 NAA15Q9BXJ9 866 aaKnown RBP4.39□□□□□ -1.71
SYNE1-207ENST00000367255 U3KPZ7 1027 aaPredicted RBP4.39□□□□□ -1.71
SYNE1-207ENST00000367255 MSL3Q8N5Y2 521 aaKnown RBP4.39□□□□□ -1.71
SYNE1-207ENST00000367255 CASKIN1Q8WXD9 1431 aa4.39□□□□□ -1.71
SYNE1-207ENST00000367255 THOC2Q8NI27 1593 aaKnown RBP4.39□□□□□ -1.71
SYNE1-207ENST00000367255 KLHL10Q6JEL2 608 aa4.39□□□□□ -1.71
SYNE1-207ENST00000367255 BABAM1Q9NWV8 329 aa4.39□□□□□ -1.71
SYNE1-207ENST00000367255 EIF2S1P05198 315 aaKnown RBP4.39□□□□□ -1.71
SYNE1-207ENST00000367255 CCDC73Q6ZRK6 1079 aa4.39□□□□□ -1.71
SYNE1-207ENST00000367255 SEPT14Q6ZU15 432 aa4.39□□□□□ -1.71
SYNE1-207ENST00000367255 DDX19AQ9NUU7 478 aaKnown RBP4.39□□□□□ -1.71
SYNE1-207ENST00000367255 RRP12Q5JTH9 1297 aaKnown RBP4.39□□□□□ -1.71
SYNE1-207ENST00000367255 ARHGEF12Q9NZN5 1544 aa4.39□□□□□ -1.71
SYNE1-207ENST00000367255 CCDC28BQ9BUN5 200 aa4.38□□□□□ -1.71
SYNE1-207ENST00000367255 PDS5BQ9NTI5 1447 aa4.38□□□□□ -1.71
SYNE1-207ENST00000367255 PEX19P40855 299 aa4.38□□□□□ -1.71
SYNE1-207ENST00000367255 CFAP61Q8NHU2 1237 aa4.38□□□□□ -1.71
SYNE1-207ENST00000367255 TSKSQ9UJT2 592 aa4.38□□□□□ -1.71
SYNE1-207ENST00000367255 RAPGEF2Q9Y4G8 1499 aa4.38□□□□□ -1.71
SYNE1-207ENST00000367255 IFI16Q16666 785 aaKnown RBP4.38□□□□□ -1.71
SYNE1-207ENST00000367255 DZIP1Q86YF9 867 aaKnown RBP4.38□□□□□ -1.71
SYNE1-207ENST00000367255 PPM1EQ8WY54 764 aa4.38□□□□□ -1.71
SYNE1-207ENST00000367255 CFAP57Q96MR6 1250 aa4.38□□□□□ -1.71
SYNE1-207ENST00000367255 STK24Q9Y6E0 443 aa4.38□□□□□ -1.71
SYNE1-207ENST00000367255 SNW1Q13573 536 aaKnown RBP4.38□□□□□ -1.71
SYNE1-207ENST00000367255 PRKRIP1Q9H875 184 aaPredicted RBP4.38□□□□□ -1.71
SYNE1-207ENST00000367255 CTDP1Q9Y5B0 961 aaPredicted RBP4.38□□□□□ -1.71
SYNE1-207ENST00000367255 EIF5P55010 431 aaKnown RBP4.38□□□□□ -1.71
SYNE1-207ENST00000367255 ODF2Q5BJF6 829 aa4.38□□□□□ -1.71
SYNE1-207ENST00000367255 ZKSCAN2Q63HK3 967 aa4.38□□□□□ -1.71
SYNE1-207ENST00000367255 UTP3Q9NQZ2 479 aaKnown RBP eCLIP4.38□□□□□ -1.71
SYNE1-207ENST00000367255 C16orf45Q96MC5 204 aaPredicted RBP4.38□□□□□ -1.71
SYNE1-207ENST00000367255 AOX1Q06278 1338 aa4.38□□□□□ -1.71
SYNE1-207ENST00000367255 BANK1Q8NDB2 785 aa4.38□□□□□ -1.71
SYNE1-207ENST00000367255 NSD3Q9BZ95 1437 aa4.38□□□□□ -1.71
SYNE1-207ENST00000367255 FAM210AQ96ND0 272 aa4.38□□□□□ -1.71
SYNE1-207ENST00000367255 CCHCR1Q8TD31 782 aa4.38□□□□□ -1.71
SYNE1-207ENST00000367255 RALGAPBQ86X10 1494 aa4.38□□□□□ -1.71
SYNE1-207ENST00000367255 XBP1P17861 261 aa4.38□□□□□ -1.71
SYNE1-207ENST00000367255 PANK1Q8TE04 598 aa4.38□□□□□ -1.71
SYNE1-207ENST00000367255 TRAF1Q13077 416 aa4.38□□□□□ -1.71
SYNE1-207ENST00000367255 RBBP5Q15291 538 aaKnown RBP4.38□□□□□ -1.71
SYNE1-207ENST00000367255 DRP2Q13474 957 aa4.37□□□□□ -1.71
SYNE1-207ENST00000367255 PPP1R9BQ96SB3 815 aa4.37□□□□□ -1.71
SYNE1-207ENST00000367255 BSDC1Q9NW68 430 aaPredicted RBP4.37□□□□□ -1.71
SYNE1-207ENST00000367255 BAG4O95429 457 aaKnown RBP4.37□□□□□ -1.71
SYNE1-207ENST00000367255 GJC2Q5T442 439 aaPredicted RBP4.37□□□□□ -1.71
SYNE1-207ENST00000367255 PPP1R2P3Q6NXS1 205 aa4.37□□□□□ -1.71
SYNE1-207ENST00000367255 JARID2Q92833 1246 aaPredicted RBP4.37□□□□□ -1.71
SYNE1-207ENST00000367255 CTAGE1Q96RT6 745 aa4.37□□□□□ -1.71
SYNE1-207ENST00000367255 HSP90AA5PQ58FG0 334 aa4.37□□□□□ -1.71
SYNE1-207ENST00000367255 CARD11Q9BXL7 1154 aa4.37□□□□□ -1.71
SYNE1-207ENST00000367255 CFAP157Q5JU67 520 aa4.37□□□□□ -1.71
SYNE1-207ENST00000367255 ALDH1L2Q3SY69 923 aa4.37□□□□□ -1.71
SYNE1-207ENST00000367255 KIF21BO75037 1637 aa4.37□□□□□ -1.71
SYNE1-207ENST00000367255 CCDC172P0C7W6 258 aa4.37□□□□□ -1.71
SYNE1-207ENST00000367255 PPP2R5AQ15172 486 aa4.37□□□□□ -1.71
SYNE1-207ENST00000367255 TAOK3Q9H2K8 898 aa4.37□□□□□ -1.71
SYNE1-207ENST00000367255 BCAP29Q9UHQ4 241 aa4.37□□□□□ -1.71
SYNE1-207ENST00000367255 PDCD2Q16342 344 aaPredicted RBP4.37□□□□□ -1.71
SYNE1-207ENST00000367255 CEP89Q96ST8 783 aa4.37□□□□□ -1.71
SYNE1-207ENST00000367255 ZNF500O60304 480 aaPredicted RBP4.37□□□□□ -1.71
SYNE1-207ENST00000367255 FGFR1OPO95684 399 aaKnown RBP4.37□□□□□ -1.71
SYNE1-207ENST00000367255 VIMP08670 466 aaKnown RBP4.37□□□□□ -1.71
SYNE1-207ENST00000367255 IPO4Q8TEX9 1081 aaKnown RBP4.37□□□□□ -1.71
SYNE1-207ENST00000367255 ANKRD45Q5TZF3 282 aa4.37□□□□□ -1.71
SYNE1-207ENST00000367255 TBC1D31Q96DN5 1066 aa4.37□□□□□ -1.71
SYNE1-207ENST00000367255 YIPF3Q9GZM5 350 aa4.37□□□□□ -1.71
SYNE1-207ENST00000367255 NBPF10Q6P3W6 841 aaKnown RBP4.37□□□□□ -1.71
SYNE1-207ENST00000367255 ARHGAP27Q6ZUM4 889 aa4.37□□□□□ -1.71
SYNE1-207ENST00000367255 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.37□□□□□ -1.71
SYNE1-207ENST00000367255 MYO1AQ9UBC5 1043 aa4.37□□□□□ -1.71
SYNE1-207ENST00000367255 TMCO4Q5TGY1 634 aa4.37□□□□□ -1.71
SYNE1-207ENST00000367255 SNAPC4Q5SXM2 1469 aa4.37□□□□□ -1.71
SYNE1-207ENST00000367255 LRPPRCP42704 1394 aaKnown RBP4.37□□□□□ -1.71
SYNE1-207ENST00000367255 UBA5Q9GZZ9 404 aa4.37□□□□□ -1.71
SYNE1-207ENST00000367255 TMEM51Q9NW97 253 aa4.37□□□□□ -1.71
SYNE1-207ENST00000367255 HNRNPCL1O60812 293 aaKnown RBP4.37□□□□□ -1.71
SYNE1-207ENST00000367255 CPSF2Q9P2I0 782 aaKnown RBP4.37□□□□□ -1.71
SYNE1-207ENST00000367255 VPS36Q86VN1 386 aa4.37□□□□□ -1.71
SYNE1-207ENST00000367255 IFT74Q96LB3 600 aa4.37□□□□□ -1.71
SYNE1-207ENST00000367255 SHTN1A0MZ66 631 aa4.36□□□□□ -1.71
SYNE1-207ENST00000367255 RASSF2P50749 326 aa4.36□□□□□ -1.71
SYNE1-207ENST00000367255 NRDE2Q9H7Z3 1164 aa4.36□□□□□ -1.71
SYNE1-207ENST00000367255 MAP3K5Q99683 1374 aa4.36□□□□□ -1.71
SYNE1-207ENST00000367255 RRP1P56182 461 aaKnown RBP4.36□□□□□ -1.71
SYNE1-207ENST00000367255 CASQ1P31415 396 aa4.36□□□□□ -1.71
SYNE1-207ENST00000367255 TXLNAP40222 546 aa4.36□□□□□ -1.71
SYNE1-207ENST00000367255 ZNF396Q96N95 335 aaPredicted RBP4.36□□□□□ -1.71
SYNE1-207ENST00000367255 TRIM14Q14142 442 aa4.36□□□□□ -1.71
SYNE1-207ENST00000367255 TRIM34Q9BYJ4 488 aa4.36□□□□□ -1.71
SYNE1-207ENST00000367255 PCSK2P16519 638 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms