RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 CNBD1Q8NA66 436 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 CCDC61Q9Y6R9 512 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 NCOA2Q15596 1464 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 DDX11Q96FC9 970 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 BRD4O60885 1362 aaPredicted RBP4.87□□□□□ -1.63
USH2A-202ENST00000366942 TRIM6-TRIM34B2RNG4 842 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 RTEL1-TNFRSF6BF6WH68 1400 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 MAP4K4O95819 1239 aaPredicted RBP4.87□□□□□ -1.63
USH2A-202ENST00000366942 PDE4AP27815 886 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 IREB2P48200 963 aaKnown RBP4.87□□□□□ -1.63
USH2A-202ENST00000366942 CCDC178Q5BJE1 867 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 CCDC102AQ96A19 550 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 LRP2BPQ9P2M1 347 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 RAPGEF2Q9Y4G8 1499 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 ALDH1A1P00352 501 aa4.86□□□□□ -1.63
USH2A-202ENST00000366942 IL2RBP14784 551 aa4.86□□□□□ -1.63
USH2A-202ENST00000366942 FKBP5Q13451 457 aaPredicted RBP4.86□□□□□ -1.63
USH2A-202ENST00000366942 PNMA8AQ86V59 439 aaPredicted RBP4.86□□□□□ -1.63
USH2A-202ENST00000366942 FAM184AQ8NB25 1140 aa4.86□□□□□ -1.63
USH2A-202ENST00000366942 ZHX3Q9H4I2 956 aa4.86□□□□□ -1.63
USH2A-202ENST00000366942 AKAP2Q9Y2D5 859 aa4.86□□□□□ -1.63
USH2A-202ENST00000366942 NCAPD3P42695 1498 aa4.86□□□□□ -1.63
USH2A-202ENST00000366942 CCDC30Q5VVM6 783 aa4.86□□□□□ -1.63
USH2A-202ENST00000366942 KIF16BQ96L93 1317 aa4.86□□□□□ -1.63
USH2A-202ENST00000366942 OSBPP22059 807 aa4.86□□□□□ -1.63
USH2A-202ENST00000366942 ZNF569Q5MCW4 686 aa4.86□□□□□ -1.63
USH2A-202ENST00000366942 GTF3C6Q969F1 213 aa4.86□□□□□ -1.63
USH2A-202ENST00000366942 AP5M1Q9H0R1 490 aa4.86□□□□□ -1.63
USH2A-202ENST00000366942 CHMP5Q9NZZ3 219 aa4.86□□□□□ -1.63
USH2A-202ENST00000366942 CIZ1Q9ULV3 898 aaPredicted RBP4.86□□□□□ -1.63
USH2A-202ENST00000366942 ARHGAP35Q9NRY4 1499 aa4.86□□□□□ -1.63
USH2A-202ENST00000366942 E2F5Q15329 346 aa4.86□□□□□ -1.63
USH2A-202ENST00000366942 CERS3Q8IU89 383 aa4.86□□□□□ -1.63
USH2A-202ENST00000366942 ZCRB1Q8TBF4 217 aaKnown RBP4.86□□□□□ -1.63
USH2A-202ENST00000366942 RAET1EQ8TD07 263 aa4.86□□□□□ -1.63
USH2A-202ENST00000366942 SERTAD1Q9UHV2 236 aa4.86□□□□□ -1.63
USH2A-202ENST00000366942 LRFN2Q9ULH4 789 aa4.86□□□□□ -1.63
USH2A-202ENST00000366942 CETN2P41208 172 aa4.86□□□□□ -1.63
USH2A-202ENST00000366942 AAK1Q2M2I8 961 aa4.86□□□□□ -1.63
USH2A-202ENST00000366942 NBPF9Q3BBW0 867 aa4.86□□□□□ -1.63
USH2A-202ENST00000366942 TTC39AQ5SRH9 613 aa4.86□□□□□ -1.63
USH2A-202ENST00000366942 ABI1Q8IZP0 508 aa4.86□□□□□ -1.63
USH2A-202ENST00000366942 PRPF31Q8WWY3 499 aaKnown RBP4.86□□□□□ -1.63
USH2A-202ENST00000366942 SLC10A4Q96EP9 437 aa4.86□□□□□ -1.63
USH2A-202ENST00000366942 ANKRD2Q9GZV1 360 aa4.86□□□□□ -1.63
USH2A-202ENST00000366942 PIM2Q9P1W9 311 aa4.86□□□□□ -1.63
USH2A-202ENST00000366942 TRMT112Q9UI30 125 aaKnown RBP4.86□□□□□ -1.63
USH2A-202ENST00000366942 TIMELESSQ9UNS1 1208 aa4.86□□□□□ -1.63
USH2A-202ENST00000366942 EPRSP07814 1512 aaKnown RBP4.86□□□□□ -1.63
USH2A-202ENST00000366942 ARHGAP5Q13017 1502 aa4.86□□□□□ -1.63
USH2A-202ENST00000366942 MYOM3Q5VTT5 1437 aa4.86□□□□□ -1.63
USH2A-202ENST00000366942 JCADQ9P266 1359 aa4.85□□□□□ -1.63
USH2A-202ENST00000366942 ARHGEF37A1IGU5 675 aa4.85□□□□□ -1.63
USH2A-202ENST00000366942 KCNJ6P48051 423 aa4.85□□□□□ -1.63
USH2A-202ENST00000366942 XPCQ01831 940 aaPredicted RBP4.85□□□□□ -1.63
USH2A-202ENST00000366942 CCDC173Q0VFZ6 552 aa4.85□□□□□ -1.63
USH2A-202ENST00000366942 TMC4Q7Z404 712 aa4.85□□□□□ -1.63
USH2A-202ENST00000366942 NKX2-3Q8TAU0 364 aa4.85□□□□□ -1.63
USH2A-202ENST00000366942 ATF5Q9Y2D1 282 aaPredicted RBP4.85□□□□□ -1.63
USH2A-202ENST00000366942 RRBP1Q9P2E9 1410 aaKnown RBP4.85□□□□□ -1.63
USH2A-202ENST00000366942 NCKAP5LQ9HCH0 1330 aa4.85□□□□□ -1.63
USH2A-202ENST00000366942 MAP3K7O43318 606 aa4.85□□□□□ -1.63
USH2A-202ENST00000366942 SLC5A1P13866 664 aa4.85□□□□□ -1.63
USH2A-202ENST00000366942 PPP2R5DQ14738 602 aa4.85□□□□□ -1.63
USH2A-202ENST00000366942 NAA30Q147X3 362 aaPredicted RBP4.85□□□□□ -1.63
USH2A-202ENST00000366942 RAB11FIP4Q86YS3 637 aa4.85□□□□□ -1.63
USH2A-202ENST00000366942 ANKRD18AQ8IVF6 992 aa4.85□□□□□ -1.63
USH2A-202ENST00000366942 FMNL2Q96PY5 1086 aa4.85□□□□□ -1.63
USH2A-202ENST00000366942 MKNK2Q9HBH9 465 aa4.85□□□□□ -1.63
USH2A-202ENST00000366942 ATAD2BQ9ULI0 1458 aa4.85□□□□□ -1.63
USH2A-202ENST00000366942 PES1O00541 588 aaKnown RBP4.85□□□□□ -1.63
USH2A-202ENST00000366942 SOCS7O14512 581 aa4.85□□□□□ -1.63
USH2A-202ENST00000366942 GNPATO15228 680 aa4.85□□□□□ -1.63
USH2A-202ENST00000366942 CA12O43570 354 aa4.85□□□□□ -1.63
USH2A-202ENST00000366942 ARID5AQ03989 594 aa4.85□□□□□ -1.63
USH2A-202ENST00000366942 UTP14CQ5TAP6 766 aaKnown RBP4.85□□□□□ -1.63
USH2A-202ENST00000366942 ZNF444Q8N0Y2 327 aaPredicted RBP4.85□□□□□ -1.63
USH2A-202ENST00000366942 SMC1BQ8NDV3 1235 aa4.85□□□□□ -1.63
USH2A-202ENST00000366942 FAM193BQ96PV7 902 aaPredicted RBP4.85□□□□□ -1.63
USH2A-202ENST00000366942 SEC63Q9UGP8 760 aaKnown RBP4.85□□□□□ -1.63
USH2A-202ENST00000366942 DAPK1P53355 1430 aa4.85□□□□□ -1.63
USH2A-202ENST00000366942 FAM98CQ17RN3 349 aaKnown RBP4.85□□□□□ -1.63
USH2A-202ENST00000366942 CC2D1BQ5T0F9 858 aaKnown RBP4.85□□□□□ -1.63
USH2A-202ENST00000366942 MICAL1Q8TDZ2 1067 aa4.85□□□□□ -1.63
USH2A-202ENST00000366942 BSDC1Q9NW68 430 aaPredicted RBP4.85□□□□□ -1.63
USH2A-202ENST00000366942 SMC1AQ14683 1233 aaKnown RBP4.85□□□□□ -1.63
USH2A-202ENST00000366942 CCDC96Q2M329 555 aa4.85□□□□□ -1.63
USH2A-202ENST00000366942 RDH13Q8NBN7 331 aa4.85□□□□□ -1.63
USH2A-202ENST00000366942 PRAM1Q96QH2 718 aa4.85□□□□□ -1.63
USH2A-202ENST00000366942 RNF181Q9P0P0 153 aa4.85□□□□□ -1.63
USH2A-202ENST00000366942 MAP2K1Q02750 393 aaPredicted RBP4.84□□□□□ -1.63
USH2A-202ENST00000366942 CFAP70Q5T0N1 1121 aa4.84□□□□□ -1.63
USH2A-202ENST00000366942 CNPY2Q9Y2B0 182 aa4.84□□□□□ -1.63
USH2A-202ENST00000366942 ZBBXA8MT70 800 aa4.84□□□□□ -1.63
USH2A-202ENST00000366942 DKC1O60832 514 aaKnown RBP eCLIP4.84□□□□□ -1.63
USH2A-202ENST00000366942 HNRNPUQ00839 825 aaKnown RBP eCLIP4.84□□□□□ -1.63
USH2A-202ENST00000366942 PLS1Q14651 629 aa4.84□□□□□ -1.63
USH2A-202ENST00000366942 DLGAP5Q15398 846 aa4.84□□□□□ -1.63
USH2A-202ENST00000366942 ZRSR2Q15696 482 aaKnown RBP4.84□□□□□ -1.63
USH2A-202ENST00000366942 FAM47CQ5HY64 1035 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms