RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 KDM3BQ7LBC6 1761 aa16.78■□□□□ 0.28
SQSTM1-201ENST00000360718 DEKP35659 375 aaKnown RBP16.78■□□□□ 0.28
SQSTM1-201ENST00000360718 TNNQ9UQP3 1299 aa16.78■□□□□ 0.28
SQSTM1-201ENST00000360718 DISP2A7MBM2 1401 aa16.78■□□□□ 0.28
SQSTM1-201ENST00000360718 IFNL2Q8IZJ0 200 aa16.77■□□□□ 0.28
SQSTM1-201ENST00000360718 SMC4Q9NTJ3 1288 aa16.77■□□□□ 0.28
SQSTM1-201ENST00000360718 WNK3Q9BYP7 1800 aa16.77■□□□□ 0.28
SQSTM1-201ENST00000360718 NPM2Q86SE8 214 aaKnown RBP16.77■□□□□ 0.27
SQSTM1-201ENST00000360718 ZCRB1Q8TBF4 217 aaKnown RBP16.77■□□□□ 0.27
SQSTM1-201ENST00000360718 KCNQ3O43525 872 aa16.76■□□□□ 0.27
SQSTM1-201ENST00000360718 ALDH1L2Q3SY69 923 aa16.76■□□□□ 0.27
SQSTM1-201ENST00000360718 CENPQQ7L2Z9 268 aaPredicted RBP16.76■□□□□ 0.27
SQSTM1-201ENST00000360718 FRAT1Q92837 279 aaPredicted RBP16.76■□□□□ 0.27
SQSTM1-201ENST00000360718 BABAM1Q9NWV8 329 aa16.76■□□□□ 0.27
SQSTM1-201ENST00000360718 C8orf37Q96NL8 207 aa16.76■□□□□ 0.27
SQSTM1-201ENST00000360718 TEFQ10587 303 aa16.75■□□□□ 0.27
SQSTM1-201ENST00000360718 SPATA31A6Q5VVP1 1343 aa16.75■□□□□ 0.27
SQSTM1-201ENST00000360718 BCL9LQ86UU0 1499 aa16.75■□□□□ 0.27
SQSTM1-201ENST00000360718 CACNA1FO60840 1977 aa16.74■□□□□ 0.27
SQSTM1-201ENST00000360718 PDE3AQ14432 1141 aa16.74■□□□□ 0.27
SQSTM1-201ENST00000360718 DDRGK1Q96HY6 314 aa16.74■□□□□ 0.27
SQSTM1-201ENST00000360718 SPATA31A1Q5TZJ5 1347 aa16.74■□□□□ 0.27
SQSTM1-201ENST00000360718 PCDH11XQ9BZA7 1347 aa16.74■□□□□ 0.27
SQSTM1-201ENST00000360718 PCDH11YQ9BZA8 1340 aa16.74■□□□□ 0.27
SQSTM1-201ENST00000360718 NGLY1Q96IV0 654 aa16.73■□□□□ 0.27
SQSTM1-201ENST00000360718 MRC1P22897 1456 aa16.73■□□□□ 0.27
SQSTM1-201ENST00000360718 BTBD11A6QL63 1104 aa16.72■□□□□ 0.27
SQSTM1-201ENST00000360718 RLBP1P12271 317 aa16.72■□□□□ 0.27
SQSTM1-201ENST00000360718 DDX54Q8TDD1 881 aaKnown RBP16.72■□□□□ 0.27
SQSTM1-201ENST00000360718 DCAF5Q96JK2 942 aa16.72■□□□□ 0.27
SQSTM1-201ENST00000360718 KIF16BQ96L93 1317 aa16.72■□□□□ 0.27
SQSTM1-201ENST00000360718 SPATA31A5Q5VU36 1347 aa16.72■□□□□ 0.27
SQSTM1-201ENST00000360718 SPATA31A7Q8IWB4 1347 aa16.72■□□□□ 0.27
SQSTM1-201ENST00000360718 KDM2BQ8NHM5 1336 aa16.72■□□□□ 0.27
SQSTM1-201ENST00000360718 MRPL50Q8N5N7 158 aaKnown RBP16.72■□□□□ 0.27
SQSTM1-201ENST00000360718 PANK1Q8TE04 598 aa16.72■□□□□ 0.27
SQSTM1-201ENST00000360718 SLC52A2Q9HAB3 445 aa16.72■□□□□ 0.27
SQSTM1-201ENST00000360718 TOGARAM1Q9Y4F4 1720 aa16.71■□□□□ 0.27
SQSTM1-201ENST00000360718 IPO8O15397 1037 aaKnown RBP16.71■□□□□ 0.27
SQSTM1-201ENST00000360718 HSP90AB1P08238 724 aaKnown RBP16.71■□□□□ 0.27
SQSTM1-201ENST00000360718 ZKSCAN2Q63HK3 967 aa16.71■□□□□ 0.27
SQSTM1-201ENST00000360718 UNC5CLQ8IV45 518 aa16.71■□□□□ 0.27
SQSTM1-201ENST00000360718 NFATC2IPQ8NCF5 419 aa16.71■□□□□ 0.27
SQSTM1-201ENST00000360718 NOB1Q9ULX3 412 aaKnown RBP16.71■□□□□ 0.27
SQSTM1-201ENST00000360718 EIF4A1P60842 406 aaKnown RBP16.71■□□□□ 0.27
SQSTM1-201ENST00000360718 FNBP4Q8N3X1 1017 aaPredicted RBP16.7■□□□□ 0.26
SQSTM1-201ENST00000360718 CLUAP1Q96AJ1 413 aa16.7■□□□□ 0.26
SQSTM1-201ENST00000360718 NKX1-1Q15270 411 aaPredicted RBP16.7■□□□□ 0.26
SQSTM1-201ENST00000360718 TRIM27P14373 513 aa16.69■□□□□ 0.26
SQSTM1-201ENST00000360718 BRPF1P55201 1214 aaPredicted RBP16.69■□□□□ 0.26
SQSTM1-201ENST00000360718 SLC39A6Q13433 755 aa16.69■□□□□ 0.26
SQSTM1-201ENST00000360718 SOS1Q07889 1333 aaPredicted RBP16.68■□□□□ 0.26
SQSTM1-201ENST00000360718 FTSJ3Q8IY81 847 aaKnown RBP16.68■□□□□ 0.26
SQSTM1-201ENST00000360718 CCDC9Q9Y3X0 531 aaKnown RBP16.68■□□□□ 0.26
SQSTM1-201ENST00000360718 COG6Q9Y2V7 657 aa16.67■□□□□ 0.26
SQSTM1-201ENST00000360718 ATF7IPQ6VMQ6 1270 aa16.67■□□□□ 0.26
SQSTM1-201ENST00000360718 NECTIN2Q92692 538 aa16.67■□□□□ 0.26
SQSTM1-201ENST00000360718 THRAP3Q9Y2W1 955 aaKnown RBP16.67■□□□□ 0.26
SQSTM1-201ENST00000360718 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.66■□□□□ 0.26
SQSTM1-201ENST00000360718 TNS2Q63HR2 1409 aa16.66■□□□□ 0.26
SQSTM1-201ENST00000360718 PRAMEF22A3QJZ6 481 aa16.66■□□□□ 0.26
SQSTM1-201ENST00000360718 DZIP1LQ8IYY4 767 aaKnown RBP16.66■□□□□ 0.26
SQSTM1-201ENST00000360718 HEG1Q9ULI3 1381 aa16.66■□□□□ 0.26
SQSTM1-201ENST00000360718 CABP4P57796 275 aa16.66■□□□□ 0.26
SQSTM1-201ENST00000360718 VPS72Q15906 364 aa16.66■□□□□ 0.26
SQSTM1-201ENST00000360718 USP21Q9UK80 565 aa16.66■□□□□ 0.26
SQSTM1-201ENST00000360718 KAT6BQ8WYB5 2073 aa16.65■□□□□ 0.26
SQSTM1-201ENST00000360718 PRKCSHP14314 528 aaPredicted RBP16.65■□□□□ 0.26
SQSTM1-201ENST00000360718 ZNF790Q6PG37 636 aa16.65■□□□□ 0.26
SQSTM1-201ENST00000360718 CHMP4AQ9BY43 222 aa16.65■□□□□ 0.26
SQSTM1-201ENST00000360718 C5P01031 1676 aa16.65■□□□□ 0.26
SQSTM1-201ENST00000360718 EXOC5O00471 708 aa16.65■□□□□ 0.26
SQSTM1-201ENST00000360718 BARGINQ6ZT62 677 aa16.65■□□□□ 0.26
SQSTM1-201ENST00000360718 GLI3P10071 1580 aa16.64■□□□□ 0.25
SQSTM1-201ENST00000360718 ITGB4P16144 1822 aa16.64■□□□□ 0.25
SQSTM1-201ENST00000360718 FAM161AQ3B820 660 aa16.64■□□□□ 0.25
SQSTM1-201ENST00000360718 MEX3CQ5U5Q3 659 aaKnown RBP16.64■□□□□ 0.25
SQSTM1-201ENST00000360718 ARHGAP45Q92619 1136 aa16.64■□□□□ 0.25
SQSTM1-201ENST00000360718 ERVV-2B6SEH9 535 aa16.63■□□□□ 0.25
SQSTM1-201ENST00000360718 FAM98CQ17RN3 349 aaKnown RBP16.63■□□□□ 0.25
SQSTM1-201ENST00000360718 G2E3Q7L622 706 aa16.63■□□□□ 0.25
SQSTM1-201ENST00000360718 GIGYF1O75420 1035 aaPredicted RBP16.63■□□□□ 0.25
SQSTM1-201ENST00000360718 SLC4A2P04920 1241 aa16.63■□□□□ 0.25
SQSTM1-201ENST00000360718 CCDC30Q5VVM6 783 aa16.63■□□□□ 0.25
SQSTM1-201ENST00000360718 STK31Q9BXU1 1019 aa16.63■□□□□ 0.25
SQSTM1-201ENST00000360718 RGS12O14924 1447 aa16.63■□□□□ 0.25
SQSTM1-201ENST00000360718 AFF2P51816 1311 aa16.63■□□□□ 0.25
SQSTM1-201ENST00000360718 PAPPAQ13219 1627 aa16.63■□□□□ 0.25
SQSTM1-201ENST00000360718 AAMPQ13685 434 aa16.62■□□□□ 0.25
SQSTM1-201ENST00000360718 SKAP1Q86WV1 359 aa16.62■□□□□ 0.25
SQSTM1-201ENST00000360718 ZNF496Q96IT1 587 aaPredicted RBP16.62■□□□□ 0.25
SQSTM1-201ENST00000360718 CDCA7Q9BWT1 371 aaPredicted RBP16.62■□□□□ 0.25
SQSTM1-201ENST00000360718 EIF2S2P20042 333 aaKnown RBP16.62■□□□□ 0.25
SQSTM1-201ENST00000360718 DDB1Q16531 1140 aa16.62■□□□□ 0.25
SQSTM1-201ENST00000360718 UBR2Q8IWV8 1755 aa16.61■□□□□ 0.25
SQSTM1-201ENST00000360718 HOXB7P09629 217 aa16.61■□□□□ 0.25
SQSTM1-201ENST00000360718 HDGFL1Q5TGJ6 251 aa16.61■□□□□ 0.25
SQSTM1-201ENST00000360718 TMEM57Q8N5G2 664 aa16.61■□□□□ 0.25
SQSTM1-201ENST00000360718 API5Q9BZZ5 524 aaKnown RBP16.61■□□□□ 0.25
SQSTM1-201ENST00000360718 DAXXQ9UER7 740 aaPredicted RBP16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 129.7 ms