RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 UBA5Q9GZZ9 404 aa18.32■□□□□ 0.52
PTPRF-201ENST00000359947 TOPBP1Q92547 1522 aa18.32■□□□□ 0.52
PTPRF-201ENST00000359947 EMILIN1Q9Y6C2 1016 aa18.31■□□□□ 0.52
PTPRF-201ENST00000359947 CEP57L1Q8IYX8 460 aa18.31■□□□□ 0.52
PTPRF-201ENST00000359947 RSPH6AQ9H0K4 717 aa18.31■□□□□ 0.52
PTPRF-201ENST00000359947 PDE3AQ14432 1141 aa18.31■□□□□ 0.52
PTPRF-201ENST00000359947 FEZ1Q99689 392 aa18.31■□□□□ 0.52
PTPRF-201ENST00000359947 AKNAQ7Z591 1439 aa18.3■□□□□ 0.52
PTPRF-201ENST00000359947 AEBP1Q8IUX7 1158 aa18.3■□□□□ 0.52
PTPRF-201ENST00000359947 FAM43AQ8N2R8 423 aa18.3■□□□□ 0.52
PTPRF-201ENST00000359947 SLC5A1P13866 664 aa18.3■□□□□ 0.52
PTPRF-201ENST00000359947 SEPT7Q16181 437 aaKnown RBP18.3■□□□□ 0.52
PTPRF-201ENST00000359947 CCDC39Q9UFE4 941 aa18.3■□□□□ 0.52
PTPRF-201ENST00000359947 ATP5J2-PTCD1G3V325 749 aa18.3■□□□□ 0.52
PTPRF-201ENST00000359947 SPATA32Q96LK8 384 aa18.3■□□□□ 0.52
PTPRF-201ENST00000359947 CCDC181Q5TID7 509 aa18.29■□□□□ 0.52
PTPRF-201ENST00000359947 ANKRD30BQ9BXX2 1392 aa18.29■□□□□ 0.52
PTPRF-201ENST00000359947 SUPT6HQ7KZ85 1726 aaKnown RBP18.29■□□□□ 0.52
PTPRF-201ENST00000359947 KRT85P78386 507 aa18.29■□□□□ 0.52
PTPRF-201ENST00000359947 ANKRD18BA2A2Z9 1011 aa18.29■□□□□ 0.52
PTPRF-201ENST00000359947 HMGB2P26583 209 aaKnown RBP18.29■□□□□ 0.52
PTPRF-201ENST00000359947 AMOTQ4VCS5 1084 aa18.29■□□□□ 0.52
PTPRF-201ENST00000359947 DACH1Q9UI36 760 aa18.29■□□□□ 0.52
PTPRF-201ENST00000359947 SYNJ1O43426 1573 aa18.29■□□□□ 0.52
PTPRF-201ENST00000359947 DAPK1P53355 1430 aa18.29■□□□□ 0.52
PTPRF-201ENST00000359947 CLEC11AQ9Y240 323 aa18.28■□□□□ 0.52
PTPRF-201ENST00000359947 VAT1LQ9HCJ6 419 aa18.28■□□□□ 0.52
PTPRF-201ENST00000359947 A0A087WZG4 1122 aa18.28■□□□□ 0.52
PTPRF-201ENST00000359947 MAP3K12Q12852 859 aa18.28■□□□□ 0.52
PTPRF-201ENST00000359947 PPP4R3AQ6IN85 833 aa18.28■□□□□ 0.52
PTPRF-201ENST00000359947 CENPHQ9H3R5 247 aa18.27■□□□□ 0.52
PTPRF-201ENST00000359947 GUCY1B3Q02153 619 aa18.27■□□□□ 0.52
PTPRF-201ENST00000359947 POLA1P09884 1462 aaPredicted RBP18.27■□□□□ 0.52
PTPRF-201ENST00000359947 MBD3O95983 291 aa18.27■□□□□ 0.51
PTPRF-201ENST00000359947 CA8P35219 290 aa18.27■□□□□ 0.51
PTPRF-201ENST00000359947 DDX46Q7L014 1031 aaKnown RBP18.27■□□□□ 0.51
PTPRF-201ENST00000359947 DMRT2Q9Y5R5 561 aa18.27■□□□□ 0.51
PTPRF-201ENST00000359947 AXDND1Q5T1B0 1012 aaPredicted RBP18.27■□□□□ 0.51
PTPRF-201ENST00000359947 CALRP27797 417 aaKnown RBP18.26■□□□□ 0.51
PTPRF-201ENST00000359947 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.26■□□□□ 0.51
PTPRF-201ENST00000359947 PRPF40BQ6NWY9 871 aaKnown RBP18.26■□□□□ 0.51
PTPRF-201ENST00000359947 ERLIN2O94905 339 aa18.25■□□□□ 0.51
PTPRF-201ENST00000359947 DESP17661 470 aa18.25■□□□□ 0.51
PTPRF-201ENST00000359947 TRIM21P19474 475 aaKnown RBP18.25■□□□□ 0.51
PTPRF-201ENST00000359947 WASF1Q92558 559 aa18.25■□□□□ 0.51
PTPRF-201ENST00000359947 CUL5Q93034 780 aa18.25■□□□□ 0.51
PTPRF-201ENST00000359947 KIF1BPQ96EK5 621 aa18.25■□□□□ 0.51
PTPRF-201ENST00000359947 LUC7LQ9NQ29 371 aaKnown RBP18.25■□□□□ 0.51
PTPRF-201ENST00000359947 WDR33Q9C0J8 1336 aaKnown RBP18.25■□□□□ 0.51
PTPRF-201ENST00000359947 CCDC192P0DO97 292 aa18.25■□□□□ 0.51
PTPRF-201ENST00000359947 F8W031 263 aaPredicted RBP18.25■□□□□ 0.51
PTPRF-201ENST00000359947 CCDC144CPQ8IYA2 1237 aa18.25■□□□□ 0.51
PTPRF-201ENST00000359947 MAP7D2Q96T17 732 aa18.25■□□□□ 0.51
PTPRF-201ENST00000359947 U3KPZ7 1027 aaPredicted RBP18.25■□□□□ 0.51
PTPRF-201ENST00000359947 NAIPQ13075 1403 aa18.25■□□□□ 0.51
PTPRF-201ENST00000359947 HSP90AB3PQ58FF7 597 aa18.25■□□□□ 0.51
PTPRF-201ENST00000359947 DHX37Q8IY37 1157 aaKnown RBP18.25■□□□□ 0.51
PTPRF-201ENST00000359947 K7ELQ4 463 aaPredicted RBP18.24■□□□□ 0.51
PTPRF-201ENST00000359947 ADGRL1O94910 1474 aa18.24■□□□□ 0.51
PTPRF-201ENST00000359947 ENOX2Q16206 610 aaKnown RBP18.24■□□□□ 0.51
PTPRF-201ENST00000359947 EIF5P55010 431 aaKnown RBP18.24■□□□□ 0.51
PTPRF-201ENST00000359947 KRT32Q14532 448 aa18.24■□□□□ 0.51
PTPRF-201ENST00000359947 FERMT3Q86UX7 667 aa18.24■□□□□ 0.51
PTPRF-201ENST00000359947 LRRFIP2Q9Y608 721 aaKnown RBP18.24■□□□□ 0.51
PTPRF-201ENST00000359947 WASLO00401 505 aaPredicted RBP18.24■□□□□ 0.51
PTPRF-201ENST00000359947 CAMK4Q16566 473 aa18.24■□□□□ 0.51
PTPRF-201ENST00000359947 SNRKQ9NRH2 765 aa18.24■□□□□ 0.51
PTPRF-201ENST00000359947 MAP3K2Q9Y2U5 619 aa18.24■□□□□ 0.51
PTPRF-201ENST00000359947 TAX1BP1Q86VP1 789 aa18.23■□□□□ 0.51
PTPRF-201ENST00000359947 ST5P78524 1137 aa18.23■□□□□ 0.51
PTPRF-201ENST00000359947 CCDC83Q8IWF9 413 aa18.23■□□□□ 0.51
PTPRF-201ENST00000359947 IDI1Q13907 227 aa18.23■□□□□ 0.51
PTPRF-201ENST00000359947 NBPF6Q5VWK0 638 aa18.23■□□□□ 0.51
PTPRF-201ENST00000359947 NBPF5PQ86XG9 351 aaPredicted RBP18.23■□□□□ 0.51
PTPRF-201ENST00000359947 NBPF4Q96M43 638 aa18.23■□□□□ 0.51
PTPRF-201ENST00000359947 LRPPRCP42704 1394 aaKnown RBP18.23■□□□□ 0.51
PTPRF-201ENST00000359947 LARP6Q9BRS8 491 aaKnown RBP18.23■□□□□ 0.51
PTPRF-201ENST00000359947 KLHL10Q6JEL2 608 aa18.22■□□□□ 0.51
PTPRF-201ENST00000359947 CTCFLQ8NI51 663 aaPredicted RBP18.22■□□□□ 0.51
PTPRF-201ENST00000359947 ERCC4Q92889 916 aaPredicted RBP18.22■□□□□ 0.51
PTPRF-201ENST00000359947 CFAP45Q9UL16 551 aa18.22■□□□□ 0.51
PTPRF-201ENST00000359947 IQCA1Q86XH1 822 aa18.22■□□□□ 0.51
PTPRF-201ENST00000359947 ANKRD24Q8TF21 1146 aa18.22■□□□□ 0.51
PTPRF-201ENST00000359947 ZNF213O14771 459 aa18.21■□□□□ 0.51
PTPRF-201ENST00000359947 FBLN1P23142 703 aa18.21■□□□□ 0.51
PTPRF-201ENST00000359947 MX1P20591 662 aa18.21■□□□□ 0.51
PTPRF-201ENST00000359947 LDHAL6AQ6ZMR3 332 aa18.21■□□□□ 0.51
PTPRF-201ENST00000359947 SLF2Q8IX21 1173 aa18.21■□□□□ 0.51
PTPRF-201ENST00000359947 CT47B1P0C2W7 299 aaPredicted RBP18.21■□□□□ 0.51
PTPRF-201ENST00000359947 SLC12A7Q9Y666 1083 aa18.21■□□□□ 0.51
PTPRF-201ENST00000359947 VTI1AQ96AJ9 217 aa18.21■□□□□ 0.51
PTPRF-201ENST00000359947 ATP6V1AP38606 617 aa18.21■□□□□ 0.51
PTPRF-201ENST00000359947 DNAAF4Q8WXU2 420 aa18.2■□□□□ 0.5
PTPRF-201ENST00000359947 FAM193AP78312 1265 aa18.2■□□□□ 0.5
PTPRF-201ENST00000359947 HYPKQ9NX55 129 aa18.2■□□□□ 0.5
PTPRF-201ENST00000359947 CEP131Q9UPN4 1083 aa18.2■□□□□ 0.5
PTPRF-201ENST00000359947 H0YHG0 523 aa18.2■□□□□ 0.5
PTPRF-201ENST00000359947 PPFIA3O75145 1194 aa18.2■□□□□ 0.5
PTPRF-201ENST00000359947 TTC16Q8NEE8 873 aa18.2■□□□□ 0.5
PTPRF-201ENST00000359947 RPAP2Q8IXW5 612 aaPredicted RBP18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms