RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 SKIDA1Q1XH10 827 aa14.61□□□□□ -0.07
COL6A3-203ENST00000353578 NBPF8Q3BBV2 869 aa14.61□□□□□ -0.07
COL6A3-203ENST00000353578 CCDC158Q5M9N0 1113 aa14.61□□□□□ -0.07
COL6A3-203ENST00000353578 RSPH14Q9UHP6 348 aa14.61□□□□□ -0.07
COL6A3-203ENST00000353578 GBP1P32455 592 aa14.61□□□□□ -0.07
COL6A3-203ENST00000353578 NAA25Q14CX7 972 aa14.61□□□□□ -0.07
COL6A3-203ENST00000353578 VGFO15240 615 aaPredicted RBP14.6□□□□□ -0.07
COL6A3-203ENST00000353578 POTEJP0CG39 1038 aa14.6□□□□□ -0.07
COL6A3-203ENST00000353578 CCDC174Q6PII3 467 aa14.6□□□□□ -0.07
COL6A3-203ENST00000353578 ADCY5O95622 1261 aa14.6□□□□□ -0.07
COL6A3-203ENST00000353578 NOL7Q9UMY1 257 aaKnown RBP14.6□□□□□ -0.07
COL6A3-203ENST00000353578 RAPGEF2Q9Y4G8 1499 aa14.6□□□□□ -0.07
COL6A3-203ENST00000353578 CTAGE1Q96RT6 745 aa14.6□□□□□ -0.07
COL6A3-203ENST00000353578 SEPT11Q9NVA2 429 aaKnown RBP14.6□□□□□ -0.07
COL6A3-203ENST00000353578 CCDC155Q8N6L0 562 aa14.6□□□□□ -0.07
COL6A3-203ENST00000353578 ANKRD62A6NC57 917 aa14.6□□□□□ -0.07
COL6A3-203ENST00000353578 MAP3K9P80192 1104 aa14.6□□□□□ -0.07
COL6A3-203ENST00000353578 MICALL1Q8N3F8 863 aa14.59□□□□□ -0.07
COL6A3-203ENST00000353578 FYCO1Q9BQS8 1478 aa14.59□□□□□ -0.07
COL6A3-203ENST00000353578 CCDC88BA6NC98 1476 aa14.59□□□□□ -0.07
COL6A3-203ENST00000353578 URI1O94763 535 aaPredicted RBP14.59□□□□□ -0.07
COL6A3-203ENST00000353578 SENP3Q9H4L4 574 aaPredicted RBP14.59□□□□□ -0.07
COL6A3-203ENST00000353578 WDR63Q8IWG1 891 aa14.59□□□□□ -0.07
COL6A3-203ENST00000353578 FKBP15Q5T1M5 1219 aa14.59□□□□□ -0.07
COL6A3-203ENST00000353578 ZFYVE27Q5T4F4 411 aa14.59□□□□□ -0.07
COL6A3-203ENST00000353578 CEP57Q86XR8 500 aa14.59□□□□□ -0.07
COL6A3-203ENST00000353578 FAM76AQ8TAV0 307 aa14.59□□□□□ -0.07
COL6A3-203ENST00000353578 VCX3BQ9H321 246 aa14.59□□□□□ -0.07
COL6A3-203ENST00000353578 PRPHP41219 470 aa14.59□□□□□ -0.07
COL6A3-203ENST00000353578 PPFIBP2Q8ND30 876 aa14.59□□□□□ -0.07
COL6A3-203ENST00000353578 ELP1O95163 1332 aa14.58□□□□□ -0.07
COL6A3-203ENST00000353578 CTAGE9A4FU28 777 aa14.58□□□□□ -0.07
COL6A3-203ENST00000353578 KANK3Q6NY19 840 aa14.58□□□□□ -0.08
COL6A3-203ENST00000353578 RASAL2Q9UJF2 1139 aa14.58□□□□□ -0.08
COL6A3-203ENST00000353578 FSD2A1L4K1 749 aa14.58□□□□□ -0.08
COL6A3-203ENST00000353578 CCDC40Q4G0X9 1142 aa14.58□□□□□ -0.08
COL6A3-203ENST00000353578 MYOM3Q5VTT5 1437 aa14.58□□□□□ -0.08
COL6A3-203ENST00000353578 MSH5O43196 834 aa14.58□□□□□ -0.08
COL6A3-203ENST00000353578 DNAI2Q9GZS0 605 aa14.58□□□□□ -0.08
COL6A3-203ENST00000353578 FAM114A2Q9NRY5 505 aa14.58□□□□□ -0.08
COL6A3-203ENST00000353578 NLRP5P59047 1200 aa14.57□□□□□ -0.08
COL6A3-203ENST00000353578 CCDC114Q96M63 670 aa14.57□□□□□ -0.08
COL6A3-203ENST00000353578 RPGRIP1LQ68CZ1 1315 aa14.57□□□□□ -0.08
COL6A3-203ENST00000353578 NCBP3Q53F19 620 aaKnown RBP14.57□□□□□ -0.08
COL6A3-203ENST00000353578 MYRIPQ8NFW9 859 aa14.57□□□□□ -0.08
COL6A3-203ENST00000353578 KCNH8Q96L42 1107 aa14.57□□□□□ -0.08
COL6A3-203ENST00000353578 ERO1AQ96HE7 468 aa14.57□□□□□ -0.08
COL6A3-203ENST00000353578 ST20-MTHFSA0A0A6YYL1 179 aa14.57□□□□□ -0.08
COL6A3-203ENST00000353578 CCT4P50991 539 aaKnown RBP14.57□□□□□ -0.08
COL6A3-203ENST00000353578 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.57□□□□□ -0.08
COL6A3-203ENST00000353578 ERCC3P19447 782 aa14.57□□□□□ -0.08
COL6A3-203ENST00000353578 CLNS1AP54105 237 aaKnown RBP14.57□□□□□ -0.08
COL6A3-203ENST00000353578 SMC6Q96SB8 1091 aa14.57□□□□□ -0.08
COL6A3-203ENST00000353578 FEZ2Q9UHY8 353 aaPredicted RBP14.57□□□□□ -0.08
COL6A3-203ENST00000353578 PHLDB2Q86SQ0 1253 aa14.57□□□□□ -0.08
COL6A3-203ENST00000353578 FAM200AQ8TCP9 573 aa14.56□□□□□ -0.08
COL6A3-203ENST00000353578 SAMD15Q9P1V8 674 aa14.56□□□□□ -0.08
COL6A3-203ENST00000353578 KIF4AO95239 1232 aa14.56□□□□□ -0.08
COL6A3-203ENST00000353578 PDZRN3Q9UPQ7 1066 aa14.56□□□□□ -0.08
COL6A3-203ENST00000353578 BMP2KQ9NSY1 1161 aaPredicted RBP14.56□□□□□ -0.08
COL6A3-203ENST00000353578 ALDH3A1P30838 453 aa14.56□□□□□ -0.08
COL6A3-203ENST00000353578 CCDC196A0A1B0GTZ2 297 aa14.56□□□□□ -0.08
COL6A3-203ENST00000353578 SPECC1Q5M775 1068 aa14.56□□□□□ -0.08
COL6A3-203ENST00000353578 CTAGE15A4D2H0 777 aa14.55□□□□□ -0.08
COL6A3-203ENST00000353578 CTAGE8P0CG41 777 aa14.55□□□□□ -0.08
COL6A3-203ENST00000353578 ATP5DP30049 168 aa14.55□□□□□ -0.08
COL6A3-203ENST00000353578 MVPQ14764 893 aaKnown RBP14.55□□□□□ -0.08
COL6A3-203ENST00000353578 CTAGE6Q86UF2 777 aa14.55□□□□□ -0.08
COL6A3-203ENST00000353578 CTAGE4Q8IX94 777 aa14.55□□□□□ -0.08
COL6A3-203ENST00000353578 CCDC57Q2TAC2 916 aa14.55□□□□□ -0.08
COL6A3-203ENST00000353578 TNPO1Q92973 898 aaKnown RBP14.55□□□□□ -0.08
COL6A3-203ENST00000353578 RABGAP1Q9Y3P9 1069 aa14.55□□□□□ -0.08
COL6A3-203ENST00000353578 DMTNQ08495 405 aa14.55□□□□□ -0.08
COL6A3-203ENST00000353578 TRIM21P19474 475 aaKnown RBP14.55□□□□□ -0.08
COL6A3-203ENST00000353578 DZIP1Q86YF9 867 aaKnown RBP14.55□□□□□ -0.08
COL6A3-203ENST00000353578 HYPKQ9NX55 129 aa14.55□□□□□ -0.08
COL6A3-203ENST00000353578 SETDB1Q15047 1291 aa14.55□□□□□ -0.08
COL6A3-203ENST00000353578 GRIPAP1Q4V328 841 aa14.55□□□□□ -0.08
COL6A3-203ENST00000353578 TRIM7Q9C029 511 aa14.55□□□□□ -0.08
COL6A3-203ENST00000353578 SLMAPQ14BN4 828 aa14.54□□□□□ -0.08
COL6A3-203ENST00000353578 CTNNA3Q9UI47 895 aa14.54□□□□□ -0.08
COL6A3-203ENST00000353578 XRCC6P12956 609 aaKnown RBP eCLIP14.54□□□□□ -0.08
COL6A3-203ENST00000353578 CCDC27Q2M243 656 aa14.54□□□□□ -0.08
COL6A3-203ENST00000353578 CHD1LQ86WJ1 897 aa14.54□□□□□ -0.08
COL6A3-203ENST00000353578 THEGQ9P2T0 379 aa14.54□□□□□ -0.08
COL6A3-203ENST00000353578 ZNF853P0CG23 659 aa14.54□□□□□ -0.08
COL6A3-203ENST00000353578 FAM177A1Q8N128 213 aaPredicted RBP14.54□□□□□ -0.08
COL6A3-203ENST00000353578 FBXW7Q969H0 707 aa14.54□□□□□ -0.08
COL6A3-203ENST00000353578 ARHGAP24Q8N264 748 aa14.54□□□□□ -0.08
COL6A3-203ENST00000353578 UBTFL1P0CB47 393 aaPredicted RBP14.54□□□□□ -0.08
COL6A3-203ENST00000353578 STMN1P16949 149 aa14.54□□□□□ -0.08
COL6A3-203ENST00000353578 INPP5BP32019 993 aa14.54□□□□□ -0.08
COL6A3-203ENST00000353578 CCDC172P0C7W6 258 aa14.53□□□□□ -0.08
COL6A3-203ENST00000353578 IRX4P78413 519 aa14.53□□□□□ -0.08
COL6A3-203ENST00000353578 APAF1O14727 1248 aa14.53□□□□□ -0.08
COL6A3-203ENST00000353578 JAKMIP2Q96AA8 810 aa14.53□□□□□ -0.08
COL6A3-203ENST00000353578 GIGYF1O75420 1035 aaPredicted RBP14.53□□□□□ -0.08
COL6A3-203ENST00000353578 RLBP1P12271 317 aa14.53□□□□□ -0.08
COL6A3-203ENST00000353578 CCDC129Q6ZRS4 1044 aa14.53□□□□□ -0.08
COL6A3-203ENST00000353578 CCDC77Q9BR77 488 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms