RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.83□□□□□ -0.68
TRIM55-204ENST00000353317 SIPA1L3O60292 1781 aaPredicted RBP10.82□□□□□ -0.68
TRIM55-204ENST00000353317 UBAP1LF5GYI3 381 aa10.82□□□□□ -0.68
TRIM55-204ENST00000353317 RNMTO43148 476 aaKnown RBP10.82□□□□□ -0.68
TRIM55-204ENST00000353317 TOM1L2Q6ZVM7 507 aa10.82□□□□□ -0.68
TRIM55-204ENST00000353317 BTG4Q9NY30 223 aa10.82□□□□□ -0.68
TRIM55-204ENST00000353317 ADAMTS7Q9UKP4 1686 aa10.82□□□□□ -0.68
TRIM55-204ENST00000353317 KDM6AO15550 1401 aaPredicted RBP10.82□□□□□ -0.68
TRIM55-204ENST00000353317 TOM1O60784 492 aa10.82□□□□□ -0.68
TRIM55-204ENST00000353317 TAF7Q15545 349 aaPredicted RBP10.82□□□□□ -0.68
TRIM55-204ENST00000353317 AMOTQ4VCS5 1084 aa10.82□□□□□ -0.68
TRIM55-204ENST00000353317 RAPGEF4Q8WZA2 1011 aa10.82□□□□□ -0.68
TRIM55-204ENST00000353317 RWDD1Q9H446 243 aaPredicted RBP10.82□□□□□ -0.68
TRIM55-204ENST00000353317 UPF2Q9HAU5 1272 aaKnown RBP10.82□□□□□ -0.68
TRIM55-204ENST00000353317 PKD1L3Q7Z443 1732 aa10.81□□□□□ -0.68
TRIM55-204ENST00000353317 KDM3BQ7LBC6 1761 aa10.81□□□□□ -0.68
TRIM55-204ENST00000353317 SCN11AQ9UI33 1791 aa10.81□□□□□ -0.68
TRIM55-204ENST00000353317 ALDH1L2Q3SY69 923 aa10.81□□□□□ -0.68
TRIM55-204ENST00000353317 TBC1D2Q9BYX2 928 aa10.81□□□□□ -0.68
TRIM55-204ENST00000353317 SHANK3Q9BYB0 1731 aa10.81□□□□□ -0.68
TRIM55-204ENST00000353317 MVPQ14764 893 aaKnown RBP10.81□□□□□ -0.68
TRIM55-204ENST00000353317 ZKSCAN2Q63HK3 967 aa10.81□□□□□ -0.68
TRIM55-204ENST00000353317 ADAMTS2O95450 1211 aa10.8□□□□□ -0.68
TRIM55-204ENST00000353317 PHKG2P15735 406 aa10.8□□□□□ -0.68
TRIM55-204ENST00000353317 TATP17735 454 aaPredicted RBP10.8□□□□□ -0.68
TRIM55-204ENST00000353317 ATF7IPQ6VMQ6 1270 aa10.8□□□□□ -0.68
TRIM55-204ENST00000353317 BRPF1P55201 1214 aaPredicted RBP10.8□□□□□ -0.68
TRIM55-204ENST00000353317 G2E3Q7L622 706 aa10.8□□□□□ -0.68
TRIM55-204ENST00000353317 NECTIN2Q92692 538 aa10.8□□□□□ -0.68
TRIM55-204ENST00000353317 C1orf141Q5JVX7 400 aa10.79□□□□□ -0.68
TRIM55-204ENST00000353317 DZIP1LQ8IYY4 767 aaKnown RBP10.79□□□□□ -0.68
TRIM55-204ENST00000353317 TMEM57Q8N5G2 664 aa10.79□□□□□ -0.68
TRIM55-204ENST00000353317 PRAMEF22A3QJZ6 481 aa10.79□□□□□ -0.68
TRIM55-204ENST00000353317 NUTM2BA6NNL0 878 aaPredicted RBP10.79□□□□□ -0.68
TRIM55-204ENST00000353317 NUTM2EB1AL46 878 aaPredicted RBP10.79□□□□□ -0.68
TRIM55-204ENST00000353317 NUTM2AQ8IVF1 878 aaPredicted RBP10.79□□□□□ -0.68
TRIM55-204ENST00000353317 CARD10Q9BWT7 1032 aa10.79□□□□□ -0.68
TRIM55-204ENST00000353317 OVOS2A0A0G2JMS6 1433 aa10.79□□□□□ -0.68
TRIM55-204ENST00000353317 EVA1CP58658 441 aa10.78□□□□□ -0.68
TRIM55-204ENST00000353317 FTSJ3Q8IY81 847 aaKnown RBP10.78□□□□□ -0.68
TRIM55-204ENST00000353317 COL14A1Q05707 1796 aaKnown RBP10.78□□□□□ -0.68
TRIM55-204ENST00000353317 EIF4A1P60842 406 aaKnown RBP10.78□□□□□ -0.68
TRIM55-204ENST00000353317 SLC39A6Q13433 755 aa10.78□□□□□ -0.68
TRIM55-204ENST00000353317 RGS12O14924 1447 aa10.78□□□□□ -0.68
TRIM55-204ENST00000353317 PLCH1Q4KWH8 1693 aa10.77□□□□□ -0.68
TRIM55-204ENST00000353317 NFATC2IPQ8NCF5 419 aa10.77□□□□□ -0.68
TRIM55-204ENST00000353317 ZNF428Q96B54 188 aa10.77□□□□□ -0.68
TRIM55-204ENST00000353317 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.77□□□□□ -0.68
TRIM55-204ENST00000353317 BTBD11A6QL63 1104 aa10.77□□□□□ -0.69
TRIM55-204ENST00000353317 SLC4A2P04920 1241 aa10.77□□□□□ -0.69
TRIM55-204ENST00000353317 CERKQ8TCT0 537 aa10.77□□□□□ -0.69
TRIM55-204ENST00000353317 PARP4Q9UKK3 1724 aaKnown RBP10.77□□□□□ -0.69
TRIM55-204ENST00000353317 KAT6BQ8WYB5 2073 aa10.77□□□□□ -0.69
TRIM55-204ENST00000353317 TEFQ10587 303 aa10.76□□□□□ -0.69
TRIM55-204ENST00000353317 IFNL2Q8IZJ0 200 aa10.76□□□□□ -0.69
TRIM55-204ENST00000353317 SPRYD3Q8NCJ5 442 aa10.76□□□□□ -0.69
TRIM55-204ENST00000353317 SPG7Q9UQ90 795 aa10.76□□□□□ -0.69
TRIM55-204ENST00000353317 KIF16BQ96L93 1317 aa10.76□□□□□ -0.69
TRIM55-204ENST00000353317 FAM43AQ8N2R8 423 aa10.76□□□□□ -0.69
TRIM55-204ENST00000353317 IL2RBP14784 551 aa10.75□□□□□ -0.69
TRIM55-204ENST00000353317 ZCRB1Q8TBF4 217 aaKnown RBP10.75□□□□□ -0.69
TRIM55-204ENST00000353317 ITPRIPQ8IWB1 547 aa10.75□□□□□ -0.69
TRIM55-204ENST00000353317 DDX54Q8TDD1 881 aaKnown RBP10.75□□□□□ -0.69
TRIM55-204ENST00000353317 C22orf23Q9BZE7 217 aa10.75□□□□□ -0.69
TRIM55-204ENST00000353317 SLC52A2Q9HAB3 445 aa10.75□□□□□ -0.69
TRIM55-204ENST00000353317 NRAPQ86VF7 1730 aa10.75□□□□□ -0.69
TRIM55-204ENST00000353317 HEG1Q9ULI3 1381 aa10.75□□□□□ -0.69
TRIM55-204ENST00000353317 ANXA1P04083 346 aa10.74□□□□□ -0.69
TRIM55-204ENST00000353317 PRKCSHP14314 528 aaPredicted RBP10.74□□□□□ -0.69
TRIM55-204ENST00000353317 MFAP1P55081 439 aaKnown RBP10.74□□□□□ -0.69
TRIM55-204ENST00000353317 HDAC1Q13547 482 aaPredicted RBP10.74□□□□□ -0.69
TRIM55-204ENST00000353317 BABAM1Q9NWV8 329 aa10.74□□□□□ -0.69
TRIM55-204ENST00000353317 CACNA1FO60840 1977 aa10.74□□□□□ -0.69
TRIM55-204ENST00000353317 ABCC4O15439 1325 aa10.74□□□□□ -0.69
TRIM55-204ENST00000353317 F6X3S4 739 aa10.74□□□□□ -0.69
TRIM55-204ENST00000353317 ARHGAP45Q92619 1136 aa10.74□□□□□ -0.69
TRIM55-204ENST00000353317 TOGARAM1Q9Y4F4 1720 aa10.74□□□□□ -0.69
TRIM55-204ENST00000353317 EIF2S2P20042 333 aaKnown RBP10.73□□□□□ -0.69
TRIM55-204ENST00000353317 PHAXQ9H814 394 aaKnown RBP10.73□□□□□ -0.69
TRIM55-204ENST00000353317 C5P01031 1676 aa10.73□□□□□ -0.69
TRIM55-204ENST00000353317 DISP2A7MBM2 1401 aa10.73□□□□□ -0.69
TRIM55-204ENST00000353317 ZBTB7BO15156 539 aaPredicted RBP10.73□□□□□ -0.69
TRIM55-204ENST00000353317 IPO8O15397 1037 aaKnown RBP10.73□□□□□ -0.69
TRIM55-204ENST00000353317 DCAF5Q96JK2 942 aa10.73□□□□□ -0.69
TRIM55-204ENST00000353317 ZBTB40Q9NUA8 1239 aa10.73□□□□□ -0.69
TRIM55-204ENST00000353317 DDX19BQ9UMR2 479 aa10.73□□□□□ -0.69
TRIM55-204ENST00000353317 GIGYF1O75420 1035 aaPredicted RBP10.72□□□□□ -0.69
TRIM55-204ENST00000353317 MRC1P22897 1456 aa10.72□□□□□ -0.69
TRIM55-204ENST00000353317 MCM4P33991 863 aa10.72□□□□□ -0.69
TRIM55-204ENST00000353317 PROSER3Q2NL68 480 aa10.72□□□□□ -0.69
TRIM55-204ENST00000353317 L1TD1Q5T7N2 865 aaKnown RBP10.72□□□□□ -0.69
TRIM55-204ENST00000353317 ZNF790Q6PG37 636 aa10.72□□□□□ -0.69
TRIM55-204ENST00000353317 SMC5Q8IY18 1101 aa10.72□□□□□ -0.69
TRIM55-204ENST00000353317 HDGFL1Q5TGJ6 251 aa10.71□□□□□ -0.69
TRIM55-204ENST00000353317 ZNF496Q96IT1 587 aaPredicted RBP10.71□□□□□ -0.69
TRIM55-204ENST00000353317 C1orf115Q9H7X2 142 aa10.71□□□□□ -0.69
TRIM55-204ENST00000353317 GLI3P10071 1580 aa10.71□□□□□ -0.69
TRIM55-204ENST00000353317 WNK3Q9BYP7 1800 aa10.71□□□□□ -0.69
TRIM55-204ENST00000353317 LRP6O75581 1613 aa10.71□□□□□ -0.69
TRIM55-204ENST00000353317 HSPA1LP34931 641 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms