RNA–Protein interactions for RNA: ENST00000343765.6

VIPAS39-202, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,761 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-202ENST00000343765 PHAXQ9H814 394 aaKnown RBP18.39■□□□□ 0.53
VIPAS39-202ENST00000343765 LRRC37A3O60309 1634 aa18.39■□□□□ 0.53
VIPAS39-202ENST00000343765 ORAI2Q96SN7 254 aa18.38■□□□□ 0.53
VIPAS39-202ENST00000343765 LRRFIP2Q9Y608 721 aaKnown RBP18.38■□□□□ 0.53
VIPAS39-202ENST00000343765 DDIT3P35638 169 aa18.38■□□□□ 0.53
VIPAS39-202ENST00000343765 CASC1Q6TDU7 716 aa18.38■□□□□ 0.53
VIPAS39-202ENST00000343765 GNAI3P08754 354 aa18.37■□□□□ 0.53
VIPAS39-202ENST00000343765 LTN1O94822 1766 aa18.37■□□□□ 0.53
VIPAS39-202ENST00000343765 USP26Q9BXU7 913 aa18.36■□□□□ 0.53
VIPAS39-202ENST00000343765 PDE1AP54750 535 aa18.36■□□□□ 0.53
VIPAS39-202ENST00000343765 TNPO1Q92973 898 aaKnown RBP18.36■□□□□ 0.53
VIPAS39-202ENST00000343765 FAM208AQ9UK61 1670 aaKnown RBP18.36■□□□□ 0.53
VIPAS39-202ENST00000343765 KCNQ3O43525 872 aa18.36■□□□□ 0.53
VIPAS39-202ENST00000343765 TRAK2O60296 914 aa18.36■□□□□ 0.53
VIPAS39-202ENST00000343765 CHD2O14647 1828 aaKnown RBP18.35■□□□□ 0.53
VIPAS39-202ENST00000343765 ADGRL3Q9HAR2 1447 aa18.35■□□□□ 0.53
VIPAS39-202ENST00000343765 ZNF530Q6P9A1 599 aaPredicted RBP18.35■□□□□ 0.53
VIPAS39-202ENST00000343765 MPRIPQ6WCQ1 1025 aa18.35■□□□□ 0.53
VIPAS39-202ENST00000343765 LRRCC1Q9C099 1032 aa18.35■□□□□ 0.53
VIPAS39-202ENST00000343765 ANXA1P04083 346 aa18.34■□□□□ 0.53
VIPAS39-202ENST00000343765 NFAT5O94916 1531 aa18.34■□□□□ 0.53
VIPAS39-202ENST00000343765 UBTFL1P0CB47 393 aaPredicted RBP18.34■□□□□ 0.53
VIPAS39-202ENST00000343765 KCNH5Q8NCM2 988 aa18.34■□□□□ 0.53
VIPAS39-202ENST00000343765 USP44Q9H0E7 712 aa18.33■□□□□ 0.53
VIPAS39-202ENST00000343765 ATP8B2P98198 1209 aa18.33■□□□□ 0.52
VIPAS39-202ENST00000343765 RABEP1Q15276 862 aa18.33■□□□□ 0.52
VIPAS39-202ENST00000343765 CHPF2Q9P2E5 772 aa18.33■□□□□ 0.52
VIPAS39-202ENST00000343765 TEFQ10587 303 aa18.32■□□□□ 0.52
VIPAS39-202ENST00000343765 USP54Q70EL1 1684 aa18.32■□□□□ 0.52
VIPAS39-202ENST00000343765 GCP02774 474 aa18.32■□□□□ 0.52
VIPAS39-202ENST00000343765 EIF4A1P60842 406 aaKnown RBP18.32■□□□□ 0.52
VIPAS39-202ENST00000343765 BABAM1Q9NWV8 329 aa18.32■□□□□ 0.52
VIPAS39-202ENST00000343765 CEMIPQ8WUJ3 1361 aa18.32■□□□□ 0.52
VIPAS39-202ENST00000343765 DDX11L8A8MPP1 907 aa18.31■□□□□ 0.52
VIPAS39-202ENST00000343765 CIZ1Q9ULV3 898 aaPredicted RBP18.31■□□□□ 0.52
VIPAS39-202ENST00000343765 RAB3GAP1Q15042 981 aa18.31■□□□□ 0.52
VIPAS39-202ENST00000343765 IL1RAPL2Q9NP60 686 aa18.31■□□□□ 0.52
VIPAS39-202ENST00000343765 BTBD11A6QL63 1104 aa18.3■□□□□ 0.52
VIPAS39-202ENST00000343765 TRIM6-TRIM34B2RNG4 842 aa18.3■□□□□ 0.52
VIPAS39-202ENST00000343765 EIF5BO60841 1220 aaKnown RBP18.3■□□□□ 0.52
VIPAS39-202ENST00000343765 MX1P20591 662 aa18.3■□□□□ 0.52
VIPAS39-202ENST00000343765 RILPL2Q969X0 211 aa18.3■□□□□ 0.52
VIPAS39-202ENST00000343765 ERC2O15083 957 aa18.3■□□□□ 0.52
VIPAS39-202ENST00000343765 REC8O95072 547 aa18.3■□□□□ 0.52
VIPAS39-202ENST00000343765 OSBPL3Q9H4L5 887 aa18.3■□□□□ 0.52
VIPAS39-202ENST00000343765 SOS1Q07889 1333 aaPredicted RBP18.3■□□□□ 0.52
VIPAS39-202ENST00000343765 SSFA2P28290 1259 aa18.29■□□□□ 0.52
VIPAS39-202ENST00000343765 SRCIN1Q9C0H9 1055 aa18.29■□□□□ 0.52
VIPAS39-202ENST00000343765 IBTKQ9P2D0 1353 aaPredicted RBP18.29■□□□□ 0.52
VIPAS39-202ENST00000343765 PLEKHO1Q53GL0 409 aaPredicted RBP18.29■□□□□ 0.52
VIPAS39-202ENST00000343765 GBP4Q96PP9 640 aa18.29■□□□□ 0.52
VIPAS39-202ENST00000343765 NPHP4O75161 1426 aaPredicted RBP18.29■□□□□ 0.52
VIPAS39-202ENST00000343765 RGPD2P0DJD1 1756 aa18.28■□□□□ 0.52
VIPAS39-202ENST00000343765 PI4KAP2A4QPH2 592 aa18.28■□□□□ 0.52
VIPAS39-202ENST00000343765 AKAP4Q5JQC9 854 aa18.28■□□□□ 0.52
VIPAS39-202ENST00000343765 PI4KAP1Q8N8J0 262 aa18.28■□□□□ 0.52
VIPAS39-202ENST00000343765 ANKRD24Q8TF21 1146 aa18.28■□□□□ 0.52
VIPAS39-202ENST00000343765 DDX17Q92841 729 aaKnown RBP18.28■□□□□ 0.52
VIPAS39-202ENST00000343765 C1orf141Q5JVX7 400 aa18.28■□□□□ 0.52
VIPAS39-202ENST00000343765 SALL3Q9BXA9 1300 aa18.27■□□□□ 0.52
VIPAS39-202ENST00000343765 GOLGA6L3A6NEY3 463 aa18.27■□□□□ 0.52
VIPAS39-202ENST00000343765 PPP1R42Q7Z4L9 355 aa18.27■□□□□ 0.52
VIPAS39-202ENST00000343765 ARHGEF25Q86VW2 580 aa18.27■□□□□ 0.52
VIPAS39-202ENST00000343765 NBPF7P0C2Y1 421 aaPredicted RBP18.27■□□□□ 0.51
VIPAS39-202ENST00000343765 NUTM1Q86Y26 1132 aa18.27■□□□□ 0.51
VIPAS39-202ENST00000343765 L1TD1Q5T7N2 865 aaKnown RBP18.26■□□□□ 0.51
VIPAS39-202ENST00000343765 AXIN2Q9Y2T1 843 aa18.26■□□□□ 0.51
VIPAS39-202ENST00000343765 PXDNQ92626 1479 aa18.26■□□□□ 0.51
VIPAS39-202ENST00000343765 SURF6O75683 361 aaKnown RBP18.26■□□□□ 0.51
VIPAS39-202ENST00000343765 PROSER2Q86WR7 435 aaPredicted RBP18.26■□□□□ 0.51
VIPAS39-202ENST00000343765 SRGAP3O43295 1099 aa18.25■□□□□ 0.51
VIPAS39-202ENST00000343765 ST18O60284 1047 aa18.25■□□□□ 0.51
VIPAS39-202ENST00000343765 UNC5CLQ8IV45 518 aa18.25■□□□□ 0.51
VIPAS39-202ENST00000343765 DNAAF4Q8WXU2 420 aa18.25■□□□□ 0.51
VIPAS39-202ENST00000343765 ZNF142P52746 1687 aaPredicted RBP18.25■□□□□ 0.51
VIPAS39-202ENST00000343765 PXDNLA1KZ92 1463 aa18.25■□□□□ 0.51
VIPAS39-202ENST00000343765 RNMTO43148 476 aaKnown RBP18.25■□□□□ 0.51
VIPAS39-202ENST00000343765 MAP4K4O95819 1239 aaPredicted RBP18.25■□□□□ 0.51
VIPAS39-202ENST00000343765 ZC3H6P61129 1189 aaKnown RBP18.25■□□□□ 0.51
VIPAS39-202ENST00000343765 KRT28Q7Z3Y7 464 aa18.25■□□□□ 0.51
VIPAS39-202ENST00000343765 PRAMEF22A3QJZ6 481 aa18.24■□□□□ 0.51
VIPAS39-202ENST00000343765 ESYT1Q9BSJ8 1104 aa18.24■□□□□ 0.51
VIPAS39-202ENST00000343765 ANO2Q9NQ90 1003 aa18.24■□□□□ 0.51
VIPAS39-202ENST00000343765 BEND3Q5T5X7 828 aa18.23■□□□□ 0.51
VIPAS39-202ENST00000343765 SSH3Q8TE77 659 aa18.23■□□□□ 0.51
VIPAS39-202ENST00000343765 PROSER3Q2NL68 480 aa18.23■□□□□ 0.51
VIPAS39-202ENST00000343765 AMOTQ4VCS5 1084 aa18.23■□□□□ 0.51
VIPAS39-202ENST00000343765 ZGPATQ8N5A5 531 aaKnown RBP18.22■□□□□ 0.51
VIPAS39-202ENST00000343765 MED1Q15648 1581 aaPredicted RBP18.22■□□□□ 0.51
VIPAS39-202ENST00000343765 CACNA1FO60840 1977 aa18.22■□□□□ 0.51
VIPAS39-202ENST00000343765 XRCC6P12956 609 aaKnown RBP eCLIP18.22■□□□□ 0.51
VIPAS39-202ENST00000343765 CHMLP26374 656 aa18.22■□□□□ 0.51
VIPAS39-202ENST00000343765 PKP1Q13835 747 aa18.22■□□□□ 0.51
VIPAS39-202ENST00000343765 HOXB7P09629 217 aa18.21■□□□□ 0.51
VIPAS39-202ENST00000343765 PANK2Q9BZ23 570 aa18.21■□□□□ 0.51
VIPAS39-202ENST00000343765 FSD2A1L4K1 749 aa18.21■□□□□ 0.51
VIPAS39-202ENST00000343765 ADCY9O60503 1353 aa18.2■□□□□ 0.5
VIPAS39-202ENST00000343765 NEK4P51957 841 aa18.2■□□□□ 0.5
VIPAS39-202ENST00000343765 NOL8Q76FK4 1167 aaKnown RBP18.2■□□□□ 0.5
VIPAS39-202ENST00000343765 RHPN1Q8TCX5 695 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms