RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 AKAP4Q5JQC9 854 aa18.85■□□□□ 0.61
TPM3-208ENST00000341485 C1orf141Q5JVX7 400 aa18.85■□□□□ 0.61
TPM3-208ENST00000341485 C1orf115Q9H7X2 142 aa18.85■□□□□ 0.61
TPM3-208ENST00000341485 TATP17735 454 aaPredicted RBP18.84■□□□□ 0.61
TPM3-208ENST00000341485 CHD1LQ86WJ1 897 aa18.84■□□□□ 0.61
TPM3-208ENST00000341485 IL17REQ8NFR9 667 aa18.84■□□□□ 0.61
TPM3-208ENST00000341485 API5Q9BZZ5 524 aaKnown RBP18.84■□□□□ 0.61
TPM3-208ENST00000341485 LNPKQ9C0E8 428 aa18.84■□□□□ 0.61
TPM3-208ENST00000341485 MIS18AQ9NYP9 233 aa18.83■□□□□ 0.61
TPM3-208ENST00000341485 PIP4K2BP78356 416 aa18.82■□□□□ 0.6
TPM3-208ENST00000341485 KRT24Q2M2I5 525 aa18.82■□□□□ 0.6
TPM3-208ENST00000341485 PHLPP1O60346 1717 aa18.82■□□□□ 0.6
TPM3-208ENST00000341485 SIRT2Q8IXJ6 389 aa18.81■□□□□ 0.6
TPM3-208ENST00000341485 MFAP1P55081 439 aaKnown RBP18.81■□□□□ 0.6
TPM3-208ENST00000341485 TAF7Q15545 349 aaPredicted RBP18.81■□□□□ 0.6
TPM3-208ENST00000341485 TOM1L2Q6ZVM7 507 aa18.81■□□□□ 0.6
TPM3-208ENST00000341485 GCC1Q96CN9 775 aa18.81■□□□□ 0.6
TPM3-208ENST00000341485 WDR17Q8IZU2 1322 aa18.81■□□□□ 0.6
TPM3-208ENST00000341485 COL5A2P05997 1499 aaPredicted RBP18.8■□□□□ 0.6
TPM3-208ENST00000341485 EVA1CP58658 441 aa18.8■□□□□ 0.6
TPM3-208ENST00000341485 SPG7Q9UQ90 795 aa18.8■□□□□ 0.6
TPM3-208ENST00000341485 CEMIPQ8WUJ3 1361 aa18.79■□□□□ 0.6
TPM3-208ENST00000341485 MPRIPQ6WCQ1 1025 aa18.79■□□□□ 0.6
TPM3-208ENST00000341485 TBC1D2Q9BYX2 928 aa18.79■□□□□ 0.6
TPM3-208ENST00000341485 C22orf23Q9BZE7 217 aa18.79■□□□□ 0.6
TPM3-208ENST00000341485 LGR6Q9HBX8 967 aa18.79■□□□□ 0.6
TPM3-208ENST00000341485 STRN4Q9NRL3 753 aa18.79■□□□□ 0.6
TPM3-208ENST00000341485 BABAM1Q9NWV8 329 aa18.79■□□□□ 0.6
TPM3-208ENST00000341485 MEGF6O75095 1541 aa18.79■□□□□ 0.6
TPM3-208ENST00000341485 RGS12O14924 1447 aa18.79■□□□□ 0.6
TPM3-208ENST00000341485 FRAT2O75474 233 aaPredicted RBP18.78■□□□□ 0.6
TPM3-208ENST00000341485 ANKRD45Q5TZF3 282 aa18.78■□□□□ 0.6
TPM3-208ENST00000341485 COL22A1Q8NFW1 1626 aaPredicted RBP18.78■□□□□ 0.6
TPM3-208ENST00000341485 TEFQ10587 303 aa18.78■□□□□ 0.6
TPM3-208ENST00000341485 RNMTO43148 476 aaKnown RBP18.77■□□□□ 0.6
TPM3-208ENST00000341485 UBAP1LF5GYI3 381 aa18.77■□□□□ 0.59
TPM3-208ENST00000341485 INTS3Q68E01 1043 aaKnown RBP18.77■□□□□ 0.59
TPM3-208ENST00000341485 PLEKHG2Q9H7P9 1386 aa18.76■□□□□ 0.59
TPM3-208ENST00000341485 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.76■□□□□ 0.594e-7■■■□□ 17.2
TPM3-208ENST00000341485 COL16A1Q07092 1604 aaPredicted RBP18.76■□□□□ 0.59
TPM3-208ENST00000341485 SLKQ9H2G2 1235 aaPredicted RBP18.75■□□□□ 0.59
TPM3-208ENST00000341485 ANTXR1Q9H6X2 564 aa18.75■□□□□ 0.59
TPM3-208ENST00000341485 OVOS2A0A0G2JMS6 1433 aa18.75■□□□□ 0.59
TPM3-208ENST00000341485 BMP2KLQ5H9B9 411 aa18.75■□□□□ 0.59
TPM3-208ENST00000341485 COL14A1Q05707 1796 aaKnown RBP18.74■□□□□ 0.59
TPM3-208ENST00000341485 LARP1Q6PKG0 1096 aaKnown RBP18.73■□□□□ 0.59
TPM3-208ENST00000341485 IFNL2Q8IZJ0 200 aa18.73■□□□□ 0.59
TPM3-208ENST00000341485 CARD10Q9BWT7 1032 aa18.73■□□□□ 0.59
TPM3-208ENST00000341485 BTG4Q9NY30 223 aa18.73■□□□□ 0.59
TPM3-208ENST00000341485 PARP4Q9UKK3 1724 aaKnown RBP18.73■□□□□ 0.59
TPM3-208ENST00000341485 PKD1L3Q7Z443 1732 aa18.73■□□□□ 0.59
TPM3-208ENST00000341485 BTBD11A6QL63 1104 aa18.72■□□□□ 0.59
TPM3-208ENST00000341485 PHKG2P15735 406 aa18.72■□□□□ 0.59
TPM3-208ENST00000341485 PTPRCP08575 1304 aa18.71■□□□□ 0.59
TPM3-208ENST00000341485 GSE1Q14687 1217 aa18.71■□□□□ 0.59
TPM3-208ENST00000341485 ATP10DQ9P241 1426 aa18.71■□□□□ 0.59
TPM3-208ENST00000341485 KDM3BQ7LBC6 1761 aa18.7■□□□□ 0.58
TPM3-208ENST00000341485 IL2RBP14784 551 aa18.7■□□□□ 0.58
TPM3-208ENST00000341485 SOS1Q07889 1333 aaPredicted RBP18.7■□□□□ 0.58
TPM3-208ENST00000341485 HSP90AB1P08238 724 aaKnown RBP18.69■□□□□ 0.58
TPM3-208ENST00000341485 RBM25P49756 843 aaKnown RBP18.69■□□□□ 0.58
TPM3-208ENST00000341485 ANKRD44Q8N8A2 993 aa18.69■□□□□ 0.58
TPM3-208ENST00000341485 DCTPP1Q9H773 170 aa18.69■□□□□ 0.58
TPM3-208ENST00000341485 ADAMTS7Q9UKP4 1686 aa18.69■□□□□ 0.58
TPM3-208ENST00000341485 STK31Q9BXU1 1019 aa18.69■□□□□ 0.58
TPM3-208ENST00000341485 SCN11AQ9UI33 1791 aa18.68■□□□□ 0.58
TPM3-208ENST00000341485 ADAMTS2O95450 1211 aa18.68■□□□□ 0.58
TPM3-208ENST00000341485 SLC4A2P04920 1241 aa18.68■□□□□ 0.58
TPM3-208ENST00000341485 ZCRB1Q8TBF4 217 aaKnown RBP18.68■□□□□ 0.58
TPM3-208ENST00000341485 NUTM2BA6NNL0 878 aaPredicted RBP18.67■□□□□ 0.58
TPM3-208ENST00000341485 NUTM2EB1AL46 878 aaPredicted RBP18.67■□□□□ 0.58
TPM3-208ENST00000341485 CYP27B1O15528 508 aa18.67■□□□□ 0.58
TPM3-208ENST00000341485 EIF4A1P60842 406 aaKnown RBP18.67■□□□□ 0.58
TPM3-208ENST00000341485 CCDC30Q5VVM6 783 aa18.67■□□□□ 0.58
TPM3-208ENST00000341485 NUTM2AQ8IVF1 878 aaPredicted RBP18.67■□□□□ 0.58
TPM3-208ENST00000341485 PCDH11XQ9BZA7 1347 aa18.67■□□□□ 0.58
TPM3-208ENST00000341485 PCDH11YQ9BZA8 1340 aa18.67■□□□□ 0.58
TPM3-208ENST00000341485 KDM6AO15550 1401 aaPredicted RBP18.67■□□□□ 0.58
TPM3-208ENST00000341485 DCAF5Q96JK2 942 aa18.67■□□□□ 0.58
TPM3-208ENST00000341485 SIPA1L3O60292 1781 aaPredicted RBP18.66■□□□□ 0.58
TPM3-208ENST00000341485 CEP85Q6P2H3 762 aa18.66■□□□□ 0.58
TPM3-208ENST00000341485 G2E3Q7L622 706 aa18.66■□□□□ 0.58
TPM3-208ENST00000341485 KCNQ3O43525 872 aa18.65■□□□□ 0.58
TPM3-208ENST00000341485 TBC1D9Q6ZT07 1266 aa18.65■□□□□ 0.58
TPM3-208ENST00000341485 PLEKHM2Q8IWE5 1019 aa18.65■□□□□ 0.58
TPM3-208ENST00000341485 RPAP2Q8IXW5 612 aaPredicted RBP18.65■□□□□ 0.58
TPM3-208ENST00000341485 SPRYD3Q8NCJ5 442 aa18.65■□□□□ 0.58
TPM3-208ENST00000341485 NECTIN2Q92692 538 aa18.65■□□□□ 0.58
TPM3-208ENST00000341485 MEIS3Q99687 375 aa18.65■□□□□ 0.58
TPM3-208ENST00000341485 SLC52A2Q9HAB3 445 aa18.65■□□□□ 0.58
TPM3-208ENST00000341485 CERKQ8TCT0 537 aa18.64■□□□□ 0.57
TPM3-208ENST00000341485 PLCH1Q4KWH8 1693 aa18.64■□□□□ 0.57
TPM3-208ENST00000341485 HDGFL1Q5TGJ6 251 aa18.64■□□□□ 0.57
TPM3-208ENST00000341485 CHMP4AQ9BY43 222 aa18.64■□□□□ 0.57
TPM3-208ENST00000341485 HOXB7P09629 217 aa18.63■□□□□ 0.57
TPM3-208ENST00000341485 GSPT1P15170 499 aaKnown RBP18.63■□□□□ 0.57
TPM3-208ENST00000341485 HSCBQ8IWL3 235 aa18.62■□□□□ 0.57
TPM3-208ENST00000341485 NFATC2IPQ8NCF5 419 aa18.62■□□□□ 0.57
TPM3-208ENST00000341485 EIF2S2P20042 333 aaKnown RBP18.62■□□□□ 0.57
TPM3-208ENST00000341485 CABP4P57796 275 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms