RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 SEPT11Q9NVA2 429 aaKnown RBP10.19□□□□□ -0.78
RTN3-202ENST00000339997 CFAP45Q9UL16 551 aa10.19□□□□□ -0.78
RTN3-202ENST00000339997 POLR3DP05423 398 aaPredicted RBP10.19□□□□□ -0.78
RTN3-202ENST00000339997 LIG1P18858 919 aa10.19□□□□□ -0.78
RTN3-202ENST00000339997 CLCN1P35523 988 aa10.19□□□□□ -0.78
RTN3-202ENST00000339997 ESCO1Q5FWF5 840 aa10.19□□□□□ -0.78
RTN3-202ENST00000339997 CCDC183Q5T5S1 534 aa10.19□□□□□ -0.78
RTN3-202ENST00000339997 RRBP1Q9P2E9 1410 aaKnown RBP10.19□□□□□ -0.78
RTN3-202ENST00000339997 ZNF165P49910 485 aa10.19□□□□□ -0.78
RTN3-202ENST00000339997 C8orf34Q49A92 452 aa10.19□□□□□ -0.78
RTN3-202ENST00000339997 CCDC144CPQ8IYA2 1237 aa10.19□□□□□ -0.78
RTN3-202ENST00000339997 CDK5RAP3Q96JB5 506 aa10.19□□□□□ -0.78
RTN3-202ENST00000339997 EMILIN1Q9Y6C2 1016 aa10.19□□□□□ -0.78
RTN3-202ENST00000339997 EPB41L2O43491 1005 aaKnown RBP10.19□□□□□ -0.78
RTN3-202ENST00000339997 MEX3CQ5U5Q3 659 aaKnown RBP10.19□□□□□ -0.78
RTN3-202ENST00000339997 C17orf53Q8N3J3 647 aaPredicted RBP10.19□□□□□ -0.78
RTN3-202ENST00000339997 GAS2L2Q8NHY3 880 aa10.19□□□□□ -0.78
RTN3-202ENST00000339997 JMYQ8N9B5 988 aa10.18□□□□□ -0.78
RTN3-202ENST00000339997 BBXQ8WY36 941 aaPredicted RBP10.18□□□□□ -0.78
RTN3-202ENST00000339997 TSC1Q92574 1164 aa10.18□□□□□ -0.78
RTN3-202ENST00000339997 PPP6R1Q9UPN7 881 aa10.18□□□□□ -0.78
RTN3-202ENST00000339997 ERLIN1O75477 346 aa10.18□□□□□ -0.78
RTN3-202ENST00000339997 LMAN1P49257 510 aa10.18□□□□□ -0.78
RTN3-202ENST00000339997 TRMT1LQ7Z2T5 733 aaKnown RBP10.18□□□□□ -0.78
RTN3-202ENST00000339997 WAPLQ7Z5K2 1190 aa10.18□□□□□ -0.78
RTN3-202ENST00000339997 RPAP2Q8IXW5 612 aaPredicted RBP10.18□□□□□ -0.78
RTN3-202ENST00000339997 CCDC113Q9H0I3 377 aa10.18□□□□□ -0.78
RTN3-202ENST00000339997 EIF5P55010 431 aaKnown RBP10.18□□□□□ -0.78
RTN3-202ENST00000339997 CCDC186Q7Z3E2 898 aa10.18□□□□□ -0.78
RTN3-202ENST00000339997 TMC6Q7Z403 805 aa10.18□□□□□ -0.78
RTN3-202ENST00000339997 MATR3P43243 847 aaKnown RBP eCLIP10.18□□□□□ -0.781e-6■■□□□ 13.3
RTN3-202ENST00000339997 TAF7Q15545 349 aaPredicted RBP10.18□□□□□ -0.78
RTN3-202ENST00000339997 CCDC158Q5M9N0 1113 aa10.18□□□□□ -0.78
RTN3-202ENST00000339997 ZGPATQ8N5A5 531 aaKnown RBP10.18□□□□□ -0.78
RTN3-202ENST00000339997 CTDP1Q9Y5B0 961 aaPredicted RBP10.18□□□□□ -0.78
RTN3-202ENST00000339997 CNPY2Q9Y2B0 182 aa10.17□□□□□ -0.78
RTN3-202ENST00000339997 GOLGA6L10A6NI86 522 aa10.17□□□□□ -0.78
RTN3-202ENST00000339997 PTCD1O75127 700 aaKnown RBP10.17□□□□□ -0.78
RTN3-202ENST00000339997 PPARDQ03181 441 aa10.17□□□□□ -0.78
RTN3-202ENST00000339997 CCAR1Q8IX12 1150 aaKnown RBP10.17□□□□□ -0.78
RTN3-202ENST00000339997 TRIM22Q8IYM9 498 aa10.17□□□□□ -0.78
RTN3-202ENST00000339997 ABCF2Q9UG63 623 aa10.17□□□□□ -0.78
RTN3-202ENST00000339997 EIF3JO75822 258 aaKnown RBP10.17□□□□□ -0.78
RTN3-202ENST00000339997 GJB2P29033 226 aa10.17□□□□□ -0.78
RTN3-202ENST00000339997 ANKRD1Q15327 319 aa10.17□□□□□ -0.78
RTN3-202ENST00000339997 CCDC69A6NI79 296 aa10.17□□□□□ -0.78
RTN3-202ENST00000339997 HAND2P61296 217 aa10.17□□□□□ -0.78
RTN3-202ENST00000339997 KIAA1328Q86T90 577 aa10.17□□□□□ -0.78
RTN3-202ENST00000339997 CRACR2AQ9BSW2 395 aa10.17□□□□□ -0.78
RTN3-202ENST00000339997 SNRKQ9NRH2 765 aa10.17□□□□□ -0.78
RTN3-202ENST00000339997 CCP110O43303 1012 aa10.16□□□□□ -0.78
RTN3-202ENST00000339997 ATP2C2O75185 946 aa10.16□□□□□ -0.78
RTN3-202ENST00000339997 RLBP1P12271 317 aa10.16□□□□□ -0.78
RTN3-202ENST00000339997 TXLNAP40222 546 aa10.16□□□□□ -0.78
RTN3-202ENST00000339997 NOLC1Q14978 699 aaKnown RBP eCLIP10.16□□□□□ -0.785e-6■□□□□ 9.2
RTN3-202ENST00000339997 KLHL40Q2TBA0 621 aa10.16□□□□□ -0.78
RTN3-202ENST00000339997 ERBINQ96RT1 1412 aa10.16□□□□□ -0.78
RTN3-202ENST00000339997 TICAM2Q86XR7 235 aa10.16□□□□□ -0.78
RTN3-202ENST00000339997 PCF11O94913 1555 aaKnown RBP10.16□□□□□ -0.78
RTN3-202ENST00000339997 HIP1O00291 1037 aa10.16□□□□□ -0.78
RTN3-202ENST00000339997 STX6O43752 255 aa10.16□□□□□ -0.78
RTN3-202ENST00000339997 TOP1P11387 765 aaKnown RBP10.16□□□□□ -0.78
RTN3-202ENST00000339997 NFE2L2Q16236 605 aa10.16□□□□□ -0.78
RTN3-202ENST00000339997 TMX3Q96JJ7 454 aa10.16□□□□□ -0.78
RTN3-202ENST00000339997 BCCIPQ9P287 314 aaKnown RBP eCLIP10.16□□□□□ -0.78
RTN3-202ENST00000339997 PHACTR2O75167 634 aa10.15□□□□□ -0.78
RTN3-202ENST00000339997 ZC3H6P61129 1189 aaKnown RBP10.15□□□□□ -0.78
RTN3-202ENST00000339997 MCM6Q14566 821 aa10.15□□□□□ -0.78
RTN3-202ENST00000339997 FSIP1Q8NA03 581 aa10.15□□□□□ -0.78
RTN3-202ENST00000339997 GPRASP1Q5JY77 1395 aa10.15□□□□□ -0.78
RTN3-202ENST00000339997 NSD3Q9BZ95 1437 aa10.15□□□□□ -0.78
RTN3-202ENST00000339997 TDO2P48775 406 aa10.15□□□□□ -0.78
RTN3-202ENST00000339997 SLC4A8Q2Y0W8 1093 aa10.15□□□□□ -0.78
RTN3-202ENST00000339997 HOMEZQ8IX15 550 aa10.15□□□□□ -0.78
RTN3-202ENST00000339997 LIMCH1Q9UPQ0 1083 aa10.15□□□□□ -0.78
RTN3-202ENST00000339997 MINDY4BA8MYZ0 360 aa10.15□□□□□ -0.79
RTN3-202ENST00000339997 RNF187Q5TA31 235 aaPredicted RBP10.15□□□□□ -0.79
RTN3-202ENST00000339997 NME9Q86XW9 330 aa10.15□□□□□ -0.79
RTN3-202ENST00000339997 ERC1Q8IUD2 1116 aa10.15□□□□□ -0.79
RTN3-202ENST00000339997 LRPPRCP42704 1394 aaKnown RBP10.14□□□□□ -0.79
RTN3-202ENST00000339997 DCAF8L1A6NGE4 600 aa10.14□□□□□ -0.79
RTN3-202ENST00000339997 CCDC57Q2TAC2 916 aa10.14□□□□□ -0.79
RTN3-202ENST00000339997 JAKMIP3Q5VZ66 844 aa10.14□□□□□ -0.79
RTN3-202ENST00000339997 USP48Q86UV5 1035 aa10.14□□□□□ -0.79
RTN3-202ENST00000339997 ZSCAN31Q96LW9 406 aaPredicted RBP10.14□□□□□ -0.79
RTN3-202ENST00000339997 CEP126Q9P2H0 1117 aa10.14□□□□□ -0.79
RTN3-202ENST00000339997 AQRO60306 1485 aaKnown RBP eCLIP10.14□□□□□ -0.792e-7■■■■□ 19.7
RTN3-202ENST00000339997 BTBD11A6QL63 1104 aa10.14□□□□□ -0.79
RTN3-202ENST00000339997 FCHSD2O94868 740 aa10.14□□□□□ -0.79
RTN3-202ENST00000339997 SDSP20132 328 aa10.14□□□□□ -0.79
RTN3-202ENST00000339997 GNG11P61952 73 aa10.14□□□□□ -0.79
RTN3-202ENST00000339997 URB2Q14146 1524 aaKnown RBP10.14□□□□□ -0.79
RTN3-202ENST00000339997 KIAA1107Q9UPP5 1409 aa10.13□□□□□ -0.79
RTN3-202ENST00000339997 USP5P45974 858 aa10.13□□□□□ -0.79
RTN3-202ENST00000339997 SCAND2PQ9GZW5 306 aaPredicted RBP10.13□□□□□ -0.79
RTN3-202ENST00000339997 PLEKHO1Q53GL0 409 aaPredicted RBP10.13□□□□□ -0.79
RTN3-202ENST00000339997 CBFA2T2O43439 604 aa10.13□□□□□ -0.79
RTN3-202ENST00000339997 CPA1P15085 419 aa10.13□□□□□ -0.79
RTN3-202ENST00000339997 DNM1Q05193 864 aaKnown RBP10.13□□□□□ -0.79
RTN3-202ENST00000339997 CEP135Q66GS9 1140 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms