RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 BTG4Q9NY30 223 aa19.73■□□□□ 0.75
LIMS1-202ENST00000338045 SCN11AQ9UI33 1791 aa19.73■□□□□ 0.75
LIMS1-202ENST00000338045 EIF4A1P60842 406 aaKnown RBP19.72■□□□□ 0.75
LIMS1-202ENST00000338045 TMEM57Q8N5G2 664 aa19.72■□□□□ 0.75
LIMS1-202ENST00000338045 DAXXQ9UER7 740 aaPredicted RBP19.72■□□□□ 0.75
LIMS1-202ENST00000338045 ABCC4O15439 1325 aa19.72■□□□□ 0.75
LIMS1-202ENST00000338045 BTBD11A6QL63 1104 aa19.71■□□□□ 0.75
LIMS1-202ENST00000338045 IL2RBP14784 551 aa19.71■□□□□ 0.75
LIMS1-202ENST00000338045 API5Q9BZZ5 524 aaKnown RBP19.71■□□□□ 0.75
LIMS1-202ENST00000338045 DDX19BQ9UMR2 479 aa19.71■□□□□ 0.75
LIMS1-202ENST00000338045 MRC1P22897 1456 aa19.71■□□□□ 0.75
LIMS1-202ENST00000338045 HSP90AB1P08238 724 aaKnown RBP19.71■□□□□ 0.75
LIMS1-202ENST00000338045 HOXB7P09629 217 aa19.71■□□□□ 0.75
LIMS1-202ENST00000338045 DCAF5Q96JK2 942 aa19.71■□□□□ 0.75
LIMS1-202ENST00000338045 CENPQQ7L2Z9 268 aaPredicted RBP19.7■□□□□ 0.74
LIMS1-202ENST00000338045 PTPRCP08575 1304 aa19.7■□□□□ 0.74
LIMS1-202ENST00000338045 ZCRB1Q8TBF4 217 aaKnown RBP19.69■□□□□ 0.74
LIMS1-202ENST00000338045 SLC52A2Q9HAB3 445 aa19.69■□□□□ 0.74
LIMS1-202ENST00000338045 CCDC30Q5VVM6 783 aa19.69■□□□□ 0.74
LIMS1-202ENST00000338045 ITPRIPQ8IWB1 547 aa19.69■□□□□ 0.74
LIMS1-202ENST00000338045 HEG1Q9ULI3 1381 aa19.69■□□□□ 0.74
LIMS1-202ENST00000338045 PCDH11XQ9BZA7 1347 aa19.68■□□□□ 0.74
LIMS1-202ENST00000338045 PCDH11YQ9BZA8 1340 aa19.68■□□□□ 0.74
LIMS1-202ENST00000338045 RGS12O14924 1447 aa19.68■□□□□ 0.74
LIMS1-202ENST00000338045 KCNQ3O43525 872 aa19.68■□□□□ 0.74
LIMS1-202ENST00000338045 SLC4A2P04920 1241 aa19.68■□□□□ 0.74
LIMS1-202ENST00000338045 SHANK3Q9BYB0 1731 aa19.66■□□□□ 0.74
LIMS1-202ENST00000338045 NKX1-1Q15270 411 aaPredicted RBP19.66■□□□□ 0.74
LIMS1-202ENST00000338045 CERKQ8TCT0 537 aa19.66■□□□□ 0.74
LIMS1-202ENST00000338045 STK31Q9BXU1 1019 aa19.66■□□□□ 0.74
LIMS1-202ENST00000338045 PCDHB15Q9Y5E8 787 aa19.66■□□□□ 0.74
LIMS1-202ENST00000338045 CACNA1FO60840 1977 aa19.66■□□□□ 0.74
LIMS1-202ENST00000338045 PLCH1Q4KWH8 1693 aa19.65■□□□□ 0.74
LIMS1-202ENST00000338045 DISP2A7MBM2 1401 aa19.65■□□□□ 0.74
LIMS1-202ENST00000338045 CHMP4AQ9BY43 222 aa19.65■□□□□ 0.74
LIMS1-202ENST00000338045 ZBTB40Q9NUA8 1239 aa19.65■□□□□ 0.74
LIMS1-202ENST00000338045 HDGFL1Q5TGJ6 251 aa19.64■□□□□ 0.73
LIMS1-202ENST00000338045 NRAPQ86VF7 1730 aa19.63■□□□□ 0.73
LIMS1-202ENST00000338045 INTS3Q68E01 1043 aaKnown RBP19.63■□□□□ 0.73
LIMS1-202ENST00000338045 NFATC2IPQ8NCF5 419 aa19.63■□□□□ 0.73
LIMS1-202ENST00000338045 ZBTB7BO15156 539 aaPredicted RBP19.62■□□□□ 0.73
LIMS1-202ENST00000338045 GIGYF1O75420 1035 aaPredicted RBP19.62■□□□□ 0.73
LIMS1-202ENST00000338045 ADAMTS2O95450 1211 aa19.62■□□□□ 0.73
LIMS1-202ENST00000338045 IGHDP01880 384 aa19.62■□□□□ 0.73
LIMS1-202ENST00000338045 ZNF790Q6PG37 636 aa19.62■□□□□ 0.73
LIMS1-202ENST00000338045 G2E3Q7L622 706 aa19.62■□□□□ 0.73
LIMS1-202ENST00000338045 CHMP4BQ9H444 224 aaKnown RBP19.62■□□□□ 0.73
LIMS1-202ENST00000338045 JCADQ9P266 1359 aa19.62■□□□□ 0.73
LIMS1-202ENST00000338045 USP35Q9P2H5 1018 aa19.61■□□□□ 0.73
LIMS1-202ENST00000338045 SLIT2O94813 1529 aa19.61■□□□□ 0.73
LIMS1-202ENST00000338045 NWD2Q9ULI1 1742 aa19.6■□□□□ 0.73
LIMS1-202ENST00000338045 ERVV-2B6SEH9 535 aa19.6■□□□□ 0.73
LIMS1-202ENST00000338045 FLIIQ13045 1269 aa19.6■□□□□ 0.73
LIMS1-202ENST00000338045 TSHZ2Q9NRE2 1034 aa19.6■□□□□ 0.73
LIMS1-202ENST00000338045 CABP4P57796 275 aa19.59■□□□□ 0.73
LIMS1-202ENST00000338045 NECTIN2Q92692 538 aa19.59■□□□□ 0.73
LIMS1-202ENST00000338045 NUTM2BA6NNL0 878 aaPredicted RBP19.58■□□□□ 0.73
LIMS1-202ENST00000338045 NUTM2EB1AL46 878 aaPredicted RBP19.58■□□□□ 0.73
LIMS1-202ENST00000338045 SLC39A6Q13433 755 aa19.58■□□□□ 0.73
LIMS1-202ENST00000338045 NUTM2AQ8IVF1 878 aaPredicted RBP19.58■□□□□ 0.73
LIMS1-202ENST00000338045 WNK3Q9BYP7 1800 aa19.57■□□□□ 0.72
LIMS1-202ENST00000338045 EIF2S2P20042 333 aaKnown RBP19.57■□□□□ 0.72
LIMS1-202ENST00000338045 HDAC1Q13547 482 aaPredicted RBP19.57■□□□□ 0.72
LIMS1-202ENST00000338045 DDX54Q8TDD1 881 aaKnown RBP19.57■□□□□ 0.72
LIMS1-202ENST00000338045 RWDD1Q9H446 243 aaPredicted RBP19.57■□□□□ 0.72
LIMS1-202ENST00000338045 THRAP3Q9Y2W1 955 aaKnown RBP19.57■□□□□ 0.72
LIMS1-202ENST00000338045 SPATA31A1Q5TZJ5 1347 aa19.56■□□□□ 0.72
LIMS1-202ENST00000338045 CHPF2Q9P2E5 772 aa19.56■□□□□ 0.72
LIMS1-202ENST00000338045 CDCA7Q9BWT1 371 aaPredicted RBP19.55■□□□□ 0.72
LIMS1-202ENST00000338045 DBF4Q9UBU7 674 aaPredicted RBP19.55■□□□□ 0.72
LIMS1-202ENST00000338045 PXDNLA1KZ92 1463 aa19.54■□□□□ 0.72
LIMS1-202ENST00000338045 FKBP5Q13451 457 aaPredicted RBP19.54■□□□□ 0.72
LIMS1-202ENST00000338045 ZNF496Q96IT1 587 aaPredicted RBP19.54■□□□□ 0.72
LIMS1-202ENST00000338045 PRAMEF22A3QJZ6 481 aa19.54■□□□□ 0.72
LIMS1-202ENST00000338045 CCT4P50991 539 aaKnown RBP19.54■□□□□ 0.72
LIMS1-202ENST00000338045 TTC5Q8N0Z6 440 aa19.54■□□□□ 0.72
LIMS1-202ENST00000338045 TOGARAM1Q9Y4F4 1720 aa19.54■□□□□ 0.72
LIMS1-202ENST00000338045 SPATA31A5Q5VU36 1347 aa19.53■□□□□ 0.72
LIMS1-202ENST00000338045 SPATA31A6Q5VVP1 1343 aa19.53■□□□□ 0.72
LIMS1-202ENST00000338045 SPATA31A7Q8IWB4 1347 aa19.53■□□□□ 0.72
LIMS1-202ENST00000338045 GLI3P10071 1580 aa19.53■□□□□ 0.72
LIMS1-202ENST00000338045 TNS2Q63HR2 1409 aa19.53■□□□□ 0.72
LIMS1-202ENST00000338045 F6X3S4 739 aa19.53■□□□□ 0.72
LIMS1-202ENST00000338045 PHAXQ9H814 394 aaKnown RBP19.53■□□□□ 0.72
LIMS1-202ENST00000338045 PAPPAQ13219 1627 aa19.53■□□□□ 0.72
LIMS1-202ENST00000338045 C5P01031 1676 aa19.52■□□□□ 0.72
LIMS1-202ENST00000338045 N4BP2Q86UW6 1770 aaPredicted RBP19.52■□□□□ 0.72
LIMS1-202ENST00000338045 FMNL2Q96PY5 1086 aa19.52■□□□□ 0.72
LIMS1-202ENST00000338045 LRP6O75581 1613 aa19.52■□□□□ 0.71
LIMS1-202ENST00000338045 UBR2Q8IWV8 1755 aa19.51■□□□□ 0.71
LIMS1-202ENST00000338045 EXOC5O00471 708 aa19.51■□□□□ 0.71
LIMS1-202ENST00000338045 SNRPA1P09661 255 aaKnown RBP19.51■□□□□ 0.71
LIMS1-202ENST00000338045 DDX21Q9NR30 783 aaKnown RBP eCLIP19.5■□□□□ 0.71
LIMS1-202ENST00000338045 SLC4A10Q6U841 1118 aa19.5■□□□□ 0.71
LIMS1-202ENST00000338045 BARGINQ6ZT62 677 aa19.5■□□□□ 0.71
LIMS1-202ENST00000338045 SKAP1Q86WV1 359 aa19.5■□□□□ 0.71
LIMS1-202ENST00000338045 UNC5CLQ8IV45 518 aa19.5■□□□□ 0.71
LIMS1-202ENST00000338045 BCL9LQ86UU0 1499 aa19.49■□□□□ 0.71
LIMS1-202ENST00000338045 KCPQ6ZWJ8 1503 aa19.49■□□□□ 0.71
LIMS1-202ENST00000338045 PDIA6Q15084 440 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms