RNA–Protein interactions for RNA: ENST00000330503.11

DDX41-201, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 2,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-201ENST00000330503 MEGF6O75095 1541 aa21.41■■□□□ 1.02
DDX41-201ENST00000330503 ADAMTS7Q9UKP4 1686 aa21.4■■□□□ 1.02
DDX41-201ENST00000330503 NHSL1Q5SYE7 1610 aa21.39■■□□□ 1.02
DDX41-201ENST00000330503 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.39■■□□□ 1.013e-6■■■■□ 26.5
DDX41-201ENST00000330503 F6X3S4 739 aa21.38■■□□□ 1.01
DDX41-201ENST00000330503 FLIIQ13045 1269 aa21.38■■□□□ 1.01
DDX41-201ENST00000330503 PRDM11Q9NQV5 511 aa21.38■■□□□ 1.01
DDX41-201ENST00000330503 SPG7Q9UQ90 795 aa21.37■■□□□ 1.01
DDX41-201ENST00000330503 PHKG2P15735 406 aa21.37■■□□□ 1.01
DDX41-201ENST00000330503 HDGFL1Q5TGJ6 251 aa21.37■■□□□ 1.01
DDX41-201ENST00000330503 CACNA1FO60840 1977 aa21.37■■□□□ 1.01
DDX41-201ENST00000330503 SIPA1L3O60292 1781 aaPredicted RBP21.36■■□□□ 1.01
DDX41-201ENST00000330503 HOXB7P09629 217 aa21.36■■□□□ 1.01
DDX41-201ENST00000330503 NUCB1Q02818 461 aa21.35■■□□□ 1.01
DDX41-201ENST00000330503 ABCA3Q99758 1704 aa21.35■■□□□ 1.01
DDX41-201ENST00000330503 PLEKHG2Q9H7P9 1386 aa21.34■■□□□ 1.01
DDX41-201ENST00000330503 HEG1Q9ULI3 1381 aa21.34■■□□□ 1.01
DDX41-201ENST00000330503 MEIS3Q99687 375 aa21.34■■□□□ 1.01
DDX41-201ENST00000330503 KDM6AO15550 1401 aaPredicted RBP21.34■■□□□ 1.01
DDX41-201ENST00000330503 EIF2S2P20042 333 aaKnown RBP21.34■■□□□ 1.01
DDX41-201ENST00000330503 CCT4P50991 539 aaKnown RBP21.34■■□□□ 1.01
DDX41-201ENST00000330503 SLC4A10Q6U841 1118 aa21.34■■□□□ 1.01
DDX41-201ENST00000330503 WDR17Q8IZU2 1322 aa21.33■■□□□ 1.01
DDX41-201ENST00000330503 ANP32AP39687 249 aaKnown RBP21.33■■□□□ 1.01
DDX41-201ENST00000330503 FKBP5Q13451 457 aaPredicted RBP21.33■■□□□ 1.01
DDX41-201ENST00000330503 IFNL2Q8IZJ0 200 aa21.33■■□□□ 1.01
DDX41-201ENST00000330503 CYP27B1O15528 508 aa21.32■■□□□ 1
DDX41-201ENST00000330503 NPM2Q86SE8 214 aaKnown RBP21.32■■□□□ 1
DDX41-201ENST00000330503 GCC1Q96CN9 775 aa21.32■■□□□ 1
DDX41-201ENST00000330503 PHAXQ9H814 394 aaKnown RBP21.32■■□□□ 1
DDX41-201ENST00000330503 SCN11AQ9UI33 1791 aa21.32■■□□□ 1
DDX41-201ENST00000330503 ANKRD44Q8N8A2 993 aa21.31■■□□□ 1
DDX41-201ENST00000330503 COL5A2P05997 1499 aaPredicted RBP21.31■■□□□ 1
DDX41-201ENST00000330503 PKD1L3Q7Z443 1732 aa21.31■■□□□ 1
DDX41-201ENST00000330503 ATP10DQ9P241 1426 aa21.31■■□□□ 1
DDX41-201ENST00000330503 GIGYF1O75420 1035 aaPredicted RBP21.31■■□□□ 1
DDX41-201ENST00000330503 CHD1LQ86WJ1 897 aa21.31■■□□□ 1
DDX41-201ENST00000330503 SLC52A2Q9HAB3 445 aa21.31■■□□□ 1
DDX41-201ENST00000330503 CHPF2Q9P2E5 772 aa21.3■■□□□ 1
DDX41-201ENST00000330503 TOM1L2Q6ZVM7 507 aa21.29■■□□□ 1
DDX41-201ENST00000330503 CEP85Q6P2H3 762 aa21.29■■□□□ 1
DDX41-201ENST00000330503 RPAP2Q8IXW5 612 aaPredicted RBP21.29■■□□□ 1
DDX41-201ENST00000330503 IPO9Q96P70 1041 aaKnown RBP21.29■■□□□ 1
DDX41-201ENST00000330503 CHMP4AQ9BY43 222 aa21.29■■□□□ 1
DDX41-201ENST00000330503 LNPKQ9C0E8 428 aa21.29■■□□□ 1
DDX41-201ENST00000330503 NFATC2IPQ8NCF5 419 aa21.28■■□□□ 1
DDX41-201ENST00000330503 PRAMEF22A3QJZ6 481 aa21.28■■□□□ 1
DDX41-201ENST00000330503 ANKRD45Q5TZF3 282 aa21.28■■□□□ 1
DDX41-201ENST00000330503 DCAF5Q96JK2 942 aa21.28■■□□□ 1
DDX41-201ENST00000330503 DCTPP1Q9H773 170 aa21.28■■□□□ 1
DDX41-201ENST00000330503 LTBP4Q8N2S1 1624 aa21.27■■□□□ 1
DDX41-201ENST00000330503 CARD10Q9BWT7 1032 aa21.27■■□□□ 1
DDX41-201ENST00000330503 SLC39A6Q13433 755 aa21.26■□□□□ 0.99
DDX41-201ENST00000330503 SEC24BO95487 1268 aa21.26■□□□□ 0.99
DDX41-201ENST00000330503 ZNF790Q6PG37 636 aa21.26■□□□□ 0.99
DDX41-201ENST00000330503 ANXA1P04083 346 aa21.25■□□□□ 0.99
DDX41-201ENST00000330503 LARP1Q6PKG0 1096 aaKnown RBP21.25■□□□□ 0.99
DDX41-201ENST00000330503 ROBO1Q9Y6N7 1651 aa21.25■□□□□ 0.99
DDX41-201ENST00000330503 ZCRB1Q8TBF4 217 aaKnown RBP21.24■□□□□ 0.99
DDX41-201ENST00000330503 PXDNLA1KZ92 1463 aa21.24■□□□□ 0.99
DDX41-201ENST00000330503 N4BP2Q86UW6 1770 aaPredicted RBP21.23■□□□□ 0.99
DDX41-201ENST00000330503 HSP90AB1P08238 724 aaKnown RBP21.23■□□□□ 0.99
DDX41-201ENST00000330503 STRN4Q9NRL3 753 aa21.23■□□□□ 0.99
DDX41-201ENST00000330503 DBF4Q9UBU7 674 aaPredicted RBP21.23■□□□□ 0.99
DDX41-201ENST00000330503 MRC1P22897 1456 aa21.23■□□□□ 0.99
DDX41-201ENST00000330503 EVA1CP58658 441 aa21.23■□□□□ 0.99
DDX41-201ENST00000330503 PROSER3Q2NL68 480 aa21.23■□□□□ 0.99
DDX41-201ENST00000330503 GNAI2P04899 355 aa21.22■□□□□ 0.99
DDX41-201ENST00000330503 PARP4Q9UKK3 1724 aaKnown RBP21.22■□□□□ 0.99
DDX41-201ENST00000330503 USP44Q9H0E7 712 aa21.22■□□□□ 0.99
DDX41-201ENST00000330503 GNAI3P08754 354 aa21.21■□□□□ 0.99
DDX41-201ENST00000330503 AHDC1Q5TGY3 1603 aaPredicted RBP21.21■□□□□ 0.99
DDX41-201ENST00000330503 PI4KAP2A4QPH2 592 aa21.2■□□□□ 0.98
DDX41-201ENST00000330503 IL2RBP14784 551 aa21.2■□□□□ 0.98
DDX41-201ENST00000330503 PI4KAP1Q8N8J0 262 aa21.2■□□□□ 0.98
DDX41-201ENST00000330503 ZNF496Q96IT1 587 aaPredicted RBP21.2■□□□□ 0.98
DDX41-201ENST00000330503 PDIA6Q15084 440 aa21.19■□□□□ 0.98
DDX41-201ENST00000330503 DNAAF4Q8WXU2 420 aa21.19■□□□□ 0.98
DDX41-201ENST00000330503 ADCY9O60503 1353 aa21.19■□□□□ 0.98
DDX41-201ENST00000330503 PCDH11XQ9BZA7 1347 aa21.19■□□□□ 0.98
DDX41-201ENST00000330503 PCDH11YQ9BZA8 1340 aa21.19■□□□□ 0.98
DDX41-201ENST00000330503 CABP4P57796 275 aa21.19■□□□□ 0.98
DDX41-201ENST00000330503 BEND3Q5T5X7 828 aa21.19■□□□□ 0.98
DDX41-201ENST00000330503 NKX1-1Q15270 411 aaPredicted RBP21.18■□□□□ 0.98
DDX41-201ENST00000330503 SRCIN1Q9C0H9 1055 aa21.18■□□□□ 0.98
DDX41-201ENST00000330503 DDX21Q9NR30 783 aaKnown RBP eCLIP21.17■□□□□ 0.98
DDX41-201ENST00000330503 BTG4Q9NY30 223 aa21.17■□□□□ 0.98
DDX41-201ENST00000330503 C5P01031 1676 aa21.17■□□□□ 0.98
DDX41-201ENST00000330503 HYPKQ9NX55 129 aa21.17■□□□□ 0.98
DDX41-201ENST00000330503 NOP58Q9Y2X3 529 aaKnown RBP21.17■□□□□ 0.98
DDX41-201ENST00000330503 ATP8B2P98198 1209 aa21.16■□□□□ 0.98
DDX41-201ENST00000330503 HMMRO75330 724 aa21.16■□□□□ 0.98
DDX41-201ENST00000330503 COL22A1Q8NFW1 1626 aaPredicted RBP21.15■□□□□ 0.98
DDX41-201ENST00000330503 ZBTB47Q9UFB7 747 aaPredicted RBP21.15■□□□□ 0.98
DDX41-201ENST00000330503 LRRFIP2Q9Y608 721 aaKnown RBP21.15■□□□□ 0.98
DDX41-201ENST00000330503 SHANK3Q9BYB0 1731 aa21.15■□□□□ 0.98
DDX41-201ENST00000330503 KSR2Q6VAB6 950 aa21.14■□□□□ 0.98
DDX41-201ENST00000330503 C16orf71Q8IYS4 520 aaPredicted RBP21.14■□□□□ 0.98
DDX41-201ENST00000330503 ERVV-2B6SEH9 535 aa21.14■□□□□ 0.97
DDX41-201ENST00000330503 TTC5Q8N0Z6 440 aa21.14■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 94.4 ms