RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 DDB1Q16531 1140 aa12.9□□□□□ -0.34
HMGB3-201ENST00000325307 KRT24Q2M2I5 525 aa12.9□□□□□ -0.34
HMGB3-201ENST00000325307 RARSP54136 660 aaKnown RBP12.9□□□□□ -0.34
HMGB3-201ENST00000325307 CABP4P57796 275 aa12.9□□□□□ -0.34
HMGB3-201ENST00000325307 PKD1L3Q7Z443 1732 aa12.89□□□□□ -0.35
HMGB3-201ENST00000325307 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.89□□□□□ -0.35
HMGB3-201ENST00000325307 FBXO41Q8TF61 875 aa12.89□□□□□ -0.35
HMGB3-201ENST00000325307 SMC4Q9NTJ3 1288 aa12.89□□□□□ -0.35
HMGB3-201ENST00000325307 KDM6AO15550 1401 aaPredicted RBP12.89□□□□□ -0.35
HMGB3-201ENST00000325307 NFATC2IPQ8NCF5 419 aa12.89□□□□□ -0.35
HMGB3-201ENST00000325307 SLC52A2Q9HAB3 445 aa12.89□□□□□ -0.35
HMGB3-201ENST00000325307 DISP2A7MBM2 1401 aa12.89□□□□□ -0.35
HMGB3-201ENST00000325307 FRAT1Q92837 279 aaPredicted RBP12.89□□□□□ -0.35
HMGB3-201ENST00000325307 BARGINQ6ZT62 677 aa12.88□□□□□ -0.35
HMGB3-201ENST00000325307 BABAM1Q9NWV8 329 aa12.88□□□□□ -0.35
HMGB3-201ENST00000325307 LRRC37A3O60309 1634 aa12.87□□□□□ -0.35
HMGB3-201ENST00000325307 TCERG1O14776 1098 aaKnown RBP12.87□□□□□ -0.35
HMGB3-201ENST00000325307 VAMP4O75379 141 aa12.87□□□□□ -0.35
HMGB3-201ENST00000325307 TRPC5Q9UL62 973 aaPredicted RBP12.87□□□□□ -0.35
HMGB3-201ENST00000325307 ERICH6BQ5W0A0 696 aa12.87□□□□□ -0.35
HMGB3-201ENST00000325307 KCNQ3O43525 872 aa12.86□□□□□ -0.35
HMGB3-201ENST00000325307 SSH1Q8WYL5 1049 aa12.86□□□□□ -0.35
HMGB3-201ENST00000325307 PODXL2Q9NZ53 605 aa12.86□□□□□ -0.35
HMGB3-201ENST00000325307 SLC39A6Q13433 755 aa12.86□□□□□ -0.35
HMGB3-201ENST00000325307 NKX1-1Q15270 411 aaPredicted RBP12.86□□□□□ -0.35
HMGB3-201ENST00000325307 GJD4Q96KN9 370 aaPredicted RBP12.86□□□□□ -0.35
HMGB3-201ENST00000325307 QTRT2Q9H974 415 aaKnown RBP12.86□□□□□ -0.35
HMGB3-201ENST00000325307 TNS2Q63HR2 1409 aa12.85□□□□□ -0.35
HMGB3-201ENST00000325307 TTC5Q8N0Z6 440 aa12.85□□□□□ -0.35
HMGB3-201ENST00000325307 ZNF428Q96B54 188 aa12.85□□□□□ -0.35
HMGB3-201ENST00000325307 SYTL4Q96C24 671 aaPredicted RBP12.85□□□□□ -0.35
HMGB3-201ENST00000325307 ERVV-2B6SEH9 535 aa12.85□□□□□ -0.35
HMGB3-201ENST00000325307 NECTIN2Q92692 538 aa12.84□□□□□ -0.35
HMGB3-201ENST00000325307 TMOD3Q9NYL9 352 aa12.84□□□□□ -0.35
HMGB3-201ENST00000325307 EIF4A1P60842 406 aaKnown RBP12.84□□□□□ -0.35
HMGB3-201ENST00000325307 ALDH1L2Q3SY69 923 aa12.84□□□□□ -0.35
HMGB3-201ENST00000325307 ZNF790Q6PG37 636 aa12.84□□□□□ -0.35
HMGB3-201ENST00000325307 PPP4R2Q9NY27 417 aa12.84□□□□□ -0.35
HMGB3-201ENST00000325307 SCN11AQ9UI33 1791 aa12.83□□□□□ -0.36
HMGB3-201ENST00000325307 KAT6BQ8WYB5 2073 aa12.83□□□□□ -0.36
HMGB3-201ENST00000325307 EIF2S2P20042 333 aaKnown RBP12.82□□□□□ -0.36
HMGB3-201ENST00000325307 MARCH10Q8NA82 808 aaPredicted RBP12.82□□□□□ -0.36
HMGB3-201ENST00000325307 STK31Q9BXU1 1019 aa12.82□□□□□ -0.36
HMGB3-201ENST00000325307 VIRMAQ69YN4 1812 aaKnown RBP12.82□□□□□ -0.36
HMGB3-201ENST00000325307 SHANK3Q9BYB0 1731 aa12.82□□□□□ -0.36
HMGB3-201ENST00000325307 KIF16BQ96L93 1317 aa12.81□□□□□ -0.36
HMGB3-201ENST00000325307 WNK3Q9BYP7 1800 aa12.81□□□□□ -0.36
HMGB3-201ENST00000325307 C20orf194Q5TEA3 1177 aa12.81□□□□□ -0.36
HMGB3-201ENST00000325307 HDGFL1Q5TGJ6 251 aa12.81□□□□□ -0.36
HMGB3-201ENST00000325307 CLUAP1Q96AJ1 413 aa12.81□□□□□ -0.36
HMGB3-201ENST00000325307 NOB1Q9ULX3 412 aaKnown RBP12.81□□□□□ -0.36
HMGB3-201ENST00000325307 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.81□□□□□ -0.36
HMGB3-201ENST00000325307 ATRNO75882 1429 aa12.81□□□□□ -0.36
HMGB3-201ENST00000325307 ADAMTS7Q9UKP4 1686 aa12.81□□□□□ -0.36
HMGB3-201ENST00000325307 ZKSCAN2Q63HK3 967 aa12.81□□□□□ -0.36
HMGB3-201ENST00000325307 ACSBG1Q96GR2 724 aa12.81□□□□□ -0.36
HMGB3-201ENST00000325307 IPO8O15397 1037 aaKnown RBP12.81□□□□□ -0.36
HMGB3-201ENST00000325307 CCDC30Q5VVM6 783 aa12.81□□□□□ -0.36
HMGB3-201ENST00000325307 PRIM1P49642 420 aaKnown RBP12.8□□□□□ -0.36
HMGB3-201ENST00000325307 ZNF772Q68DY9 489 aaPredicted RBP12.8□□□□□ -0.36
HMGB3-201ENST00000325307 FTSJ3Q8IY81 847 aaKnown RBP12.8□□□□□ -0.36
HMGB3-201ENST00000325307 MRC1P22897 1456 aa12.8□□□□□ -0.36
HMGB3-201ENST00000325307 SLC4A2P04920 1241 aa12.8□□□□□ -0.36
HMGB3-201ENST00000325307 B4GALNT3Q6L9W6 998 aa12.8□□□□□ -0.36
HMGB3-201ENST00000325307 MRPL50Q8N5N7 158 aaKnown RBP12.8□□□□□ -0.36
HMGB3-201ENST00000325307 ZNF496Q96IT1 587 aaPredicted RBP12.8□□□□□ -0.36
HMGB3-201ENST00000325307 PTCD1O75127 700 aaKnown RBP12.8□□□□□ -0.36
HMGB3-201ENST00000325307 FMNL2Q96PY5 1086 aa12.8□□□□□ -0.36
HMGB3-201ENST00000325307 SEPT12Q8IYM1 358 aa12.79□□□□□ -0.36
HMGB3-201ENST00000325307 PIGBQ92521 554 aa12.79□□□□□ -0.36
HMGB3-201ENST00000325307 SOS1Q07889 1333 aaPredicted RBP12.79□□□□□ -0.36
HMGB3-201ENST00000325307 PANK1Q8TE04 598 aa12.79□□□□□ -0.36
HMGB3-201ENST00000325307 CHMP4AQ9BY43 222 aa12.79□□□□□ -0.36
HMGB3-201ENST00000325307 GIGYF1O75420 1035 aaPredicted RBP12.79□□□□□ -0.36
HMGB3-201ENST00000325307 CRBNQ96SW2 442 aa12.79□□□□□ -0.36
HMGB3-201ENST00000325307 PRAMEF22A3QJZ6 481 aa12.78□□□□□ -0.36
HMGB3-201ENST00000325307 HOXB7P09629 217 aa12.78□□□□□ -0.36
HMGB3-201ENST00000325307 EXOC6Q8TAG9 804 aa12.78□□□□□ -0.36
HMGB3-201ENST00000325307 GLI3P10071 1580 aa12.78□□□□□ -0.36
HMGB3-201ENST00000325307 KDM3BQ7LBC6 1761 aa12.78□□□□□ -0.36
HMGB3-201ENST00000325307 FAM182BQ5T319 152 aa12.78□□□□□ -0.36
HMGB3-201ENST00000325307 ATF7IPQ6VMQ6 1270 aa12.78□□□□□ -0.36
HMGB3-201ENST00000325307 TNNQ9UQP3 1299 aa12.78□□□□□ -0.36
HMGB3-201ENST00000325307 SIPA1L3O60292 1781 aaPredicted RBP12.78□□□□□ -0.36
HMGB3-201ENST00000325307 PKNOX2Q96KN3 472 aa12.78□□□□□ -0.36
HMGB3-201ENST00000325307 ASAP1Q9ULH1 1129 aa12.78□□□□□ -0.36
HMGB3-201ENST00000325307 SNRPA1P09661 255 aaKnown RBP12.77□□□□□ -0.36
HMGB3-201ENST00000325307 MS4A1P11836 297 aa12.77□□□□□ -0.36
HMGB3-201ENST00000325307 TRIM27P14373 513 aa12.77□□□□□ -0.36
HMGB3-201ENST00000325307 PDE3AQ14432 1141 aa12.77□□□□□ -0.36
HMGB3-201ENST00000325307 DZIP1LQ8IYY4 767 aaKnown RBP12.77□□□□□ -0.36
HMGB3-201ENST00000325307 RBM42Q9BTD8 480 aaKnown RBP12.77□□□□□ -0.37
HMGB3-201ENST00000325307 COG6Q9Y2V7 657 aa12.76□□□□□ -0.37
HMGB3-201ENST00000325307 BRPF1P55201 1214 aaPredicted RBP12.76□□□□□ -0.37
HMGB3-201ENST00000325307 CHPF2Q9P2E5 772 aa12.76□□□□□ -0.37
HMGB3-201ENST00000325307 TOGARAM1Q9Y4F4 1720 aa12.76□□□□□ -0.37
HMGB3-201ENST00000325307 RBM6P78332 1123 aaKnown RBP12.75□□□□□ -0.37
HMGB3-201ENST00000325307 BCL9O00512 1426 aa12.75□□□□□ -0.37
HMGB3-201ENST00000325307 ONECUT3O60422 494 aaPredicted RBP12.75□□□□□ -0.37
HMGB3-201ENST00000325307 RLBP1P12271 317 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms