RNA–Protein interactions for RNA: ENST00000324340.13

DDX39A-202, Transcript of DExD-box helicase 39A, humanhuman

TSL 1 (best)

Gene DDX39A, Length 1,355 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-202ENST00000324340 BARGINQ6ZT62 677 aa16.41■□□□□ 0.22
DDX39A-202ENST00000324340 TSPYL4Q9UJ04 414 aa16.41■□□□□ 0.22
DDX39A-202ENST00000324340 TEFQ10587 303 aa16.4■□□□□ 0.22
DDX39A-202ENST00000324340 VPS72Q15906 364 aa16.4■□□□□ 0.22
DDX39A-202ENST00000324340 C8orf58Q8NAV2 365 aa16.4■□□□□ 0.22
DDX39A-202ENST00000324340 BCAR3O75815 825 aa16.39■□□□□ 0.21
DDX39A-202ENST00000324340 TWISTNBQ3B726 338 aaPredicted RBP16.39■□□□□ 0.21
DDX39A-202ENST00000324340 ALDH1L2Q3SY69 923 aa16.39■□□□□ 0.21
DDX39A-202ENST00000324340 TNS2Q63HR2 1409 aa16.39■□□□□ 0.21
DDX39A-202ENST00000324340 TSPYL6Q8N831 410 aa16.39■□□□□ 0.21
DDX39A-202ENST00000324340 SOS1Q07889 1333 aaPredicted RBP16.39■□□□□ 0.21
DDX39A-202ENST00000324340 BRPF1P55201 1214 aaPredicted RBP16.38■□□□□ 0.21
DDX39A-202ENST00000324340 SLC52A2Q9HAB3 445 aa16.38■□□□□ 0.21
DDX39A-202ENST00000324340 MIS18AQ9NYP9 233 aa16.38■□□□□ 0.21
DDX39A-202ENST00000324340 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.38■□□□□ 0.21
DDX39A-202ENST00000324340 PPP4R2Q9NY27 417 aa16.38■□□□□ 0.21
DDX39A-202ENST00000324340 TOGARAM1Q9Y4F4 1720 aa16.37■□□□□ 0.21
DDX39A-202ENST00000324340 BTBD11A6QL63 1104 aa16.37■□□□□ 0.21
DDX39A-202ENST00000324340 SSH1Q8WYL5 1049 aa16.37■□□□□ 0.21
DDX39A-202ENST00000324340 USP21Q9UK80 565 aa16.37■□□□□ 0.21
DDX39A-202ENST00000324340 ERVV-2B6SEH9 535 aa16.36■□□□□ 0.21
DDX39A-202ENST00000324340 MEX3CQ5U5Q3 659 aaKnown RBP16.36■□□□□ 0.21
DDX39A-202ENST00000324340 EXOC5O00471 708 aa16.35■□□□□ 0.21
DDX39A-202ENST00000324340 PLIN1O60240 522 aa16.35■□□□□ 0.21
DDX39A-202ENST00000324340 IRX6P78412 446 aaPredicted RBP16.35■□□□□ 0.21
DDX39A-202ENST00000324340 KRT24Q2M2I5 525 aa16.35■□□□□ 0.21
DDX39A-202ENST00000324340 HEG1Q9ULI3 1381 aa16.35■□□□□ 0.21
DDX39A-202ENST00000324340 PAPPAQ13219 1627 aa16.34■□□□□ 0.21
DDX39A-202ENST00000324340 THSD7AQ9UPZ6 1657 aa16.34■□□□□ 0.21
DDX39A-202ENST00000324340 HOXB7P09629 217 aa16.34■□□□□ 0.21
DDX39A-202ENST00000324340 EIF4A1P60842 406 aaKnown RBP16.34■□□□□ 0.21
DDX39A-202ENST00000324340 DDX54Q8TDD1 881 aaKnown RBP16.34■□□□□ 0.21
DDX39A-202ENST00000324340 AFF2P51816 1311 aa16.34■□□□□ 0.21
DDX39A-202ENST00000324340 ATRNO75882 1429 aa16.34■□□□□ 0.21
DDX39A-202ENST00000324340 ELL2O00472 640 aaPredicted RBP16.33■□□□□ 0.2
DDX39A-202ENST00000324340 NFATC2IPQ8NCF5 419 aa16.33■□□□□ 0.2
DDX39A-202ENST00000324340 SMC4Q9NTJ3 1288 aa16.33■□□□□ 0.2
DDX39A-202ENST00000324340 GLI3P10071 1580 aa16.33■□□□□ 0.2
DDX39A-202ENST00000324340 PDE3AQ14432 1141 aa16.32■□□□□ 0.2
DDX39A-202ENST00000324340 DDB1Q16531 1140 aa16.32■□□□□ 0.2
DDX39A-202ENST00000324340 BCL2L13Q9BXK5 485 aa16.32■□□□□ 0.2
DDX39A-202ENST00000324340 CCDC9Q9Y3X0 531 aaKnown RBP16.32■□□□□ 0.2
DDX39A-202ENST00000324340 KIF16BQ96L93 1317 aa16.32■□□□□ 0.2
DDX39A-202ENST00000324340 UBR2Q8IWV8 1755 aa16.31■□□□□ 0.2
DDX39A-202ENST00000324340 KCNQ3O43525 872 aa16.31■□□□□ 0.2
DDX39A-202ENST00000324340 CABP4P57796 275 aa16.31■□□□□ 0.2
DDX39A-202ENST00000324340 ZNF790Q6PG37 636 aa16.31■□□□□ 0.2
DDX39A-202ENST00000324340 MRPL50Q8N5N7 158 aaKnown RBP16.31■□□□□ 0.2
DDX39A-202ENST00000324340 C20orf194Q5TEA3 1177 aa16.3■□□□□ 0.2
DDX39A-202ENST00000324340 ITGB4P16144 1822 aa16.3■□□□□ 0.2
DDX39A-202ENST00000324340 ZKSCAN2Q63HK3 967 aa16.29■□□□□ 0.2
DDX39A-202ENST00000324340 ARHGAP45Q92619 1136 aa16.29■□□□□ 0.2
DDX39A-202ENST00000324340 GJD4Q96KN9 370 aaPredicted RBP16.29■□□□□ 0.2
DDX39A-202ENST00000324340 TRPC5Q9UL62 973 aaPredicted RBP16.29■□□□□ 0.2
DDX39A-202ENST00000324340 CACNA1FO60840 1977 aa16.29■□□□□ 0.2
DDX39A-202ENST00000324340 ONECUT3O60422 494 aaPredicted RBP16.28■□□□□ 0.2
DDX39A-202ENST00000324340 FAM98CQ17RN3 349 aaKnown RBP16.28■□□□□ 0.2
DDX39A-202ENST00000324340 FRAT1Q92837 279 aaPredicted RBP16.28■□□□□ 0.2
DDX39A-202ENST00000324340 CHMP4AQ9BY43 222 aa16.28■□□□□ 0.2
DDX39A-202ENST00000324340 NOP58Q9Y2X3 529 aaKnown RBP16.28■□□□□ 0.2
DDX39A-202ENST00000324340 DOT1LQ8TEK3 1739 aa16.28■□□□□ 0.2
DDX39A-202ENST00000324340 IPO8O15397 1037 aaKnown RBP16.27■□□□□ 0.2
DDX39A-202ENST00000324340 GIGYF1O75420 1035 aaPredicted RBP16.27■□□□□ 0.2
DDX39A-202ENST00000324340 CANXP27824 592 aaKnown RBP16.27■□□□□ 0.2
DDX39A-202ENST00000324340 NOB1Q9ULX3 412 aaKnown RBP16.27■□□□□ 0.2
DDX39A-202ENST00000324340 C5P01031 1676 aa16.27■□□□□ 0.2
DDX39A-202ENST00000324340 KCPQ6ZWJ8 1503 aa16.27■□□□□ 0.19
DDX39A-202ENST00000324340 MS4A1P11836 297 aa16.26■□□□□ 0.19
DDX39A-202ENST00000324340 TRIM27P14373 513 aa16.26■□□□□ 0.19
DDX39A-202ENST00000324340 SLC39A6Q13433 755 aa16.26■□□□□ 0.19
DDX39A-202ENST00000324340 CCDC30Q5VVM6 783 aa16.26■□□□□ 0.19
DDX39A-202ENST00000324340 ATF7IPQ6VMQ6 1270 aa16.26■□□□□ 0.19
DDX39A-202ENST00000324340 MARCH10Q8NA82 808 aaPredicted RBP16.26■□□□□ 0.19
DDX39A-202ENST00000324340 BCL9O00512 1426 aa16.26■□□□□ 0.19
DDX39A-202ENST00000324340 EXOC6Q8TAG9 804 aa16.26■□□□□ 0.19
DDX39A-202ENST00000324340 CRBNQ96SW2 442 aa16.26■□□□□ 0.19
DDX39A-202ENST00000324340 LAMB4A4D0S4 1761 aa16.25■□□□□ 0.19
DDX39A-202ENST00000324340 TTC5Q8N0Z6 440 aa16.25■□□□□ 0.19
DDX39A-202ENST00000324340 ZNF496Q96IT1 587 aaPredicted RBP16.25■□□□□ 0.19
DDX39A-202ENST00000324340 TMOD3Q9NYL9 352 aa16.25■□□□□ 0.19
DDX39A-202ENST00000324340 PTPRCP08575 1304 aa16.24■□□□□ 0.19
DDX39A-202ENST00000324340 TCERG1O14776 1098 aaKnown RBP16.24■□□□□ 0.19
DDX39A-202ENST00000324340 HDGFL1Q5TGJ6 251 aa16.24■□□□□ 0.19
DDX39A-202ENST00000324340 DZIP1LQ8IYY4 767 aaKnown RBP16.24■□□□□ 0.19
DDX39A-202ENST00000324340 FMNL2Q96PY5 1086 aa16.24■□□□□ 0.19
DDX39A-202ENST00000324340 STK31Q9BXU1 1019 aa16.24■□□□□ 0.19
DDX39A-202ENST00000324340 SLC4A2P04920 1241 aa16.23■□□□□ 0.19
DDX39A-202ENST00000324340 RLBP1P12271 317 aa16.23■□□□□ 0.19
DDX39A-202ENST00000324340 PANK1Q8TE04 598 aa16.23■□□□□ 0.19
DDX39A-202ENST00000324340 PIGBQ92521 554 aa16.23■□□□□ 0.19
DDX39A-202ENST00000324340 QTRT2Q9H974 415 aaKnown RBP16.23■□□□□ 0.19
DDX39A-202ENST00000324340 TNNQ9UQP3 1299 aa16.23■□□□□ 0.19
DDX39A-202ENST00000324340 RGS12O14924 1447 aa16.22■□□□□ 0.19
DDX39A-202ENST00000324340 SNRPA1P09661 255 aaKnown RBP16.22■□□□□ 0.19
DDX39A-202ENST00000324340 API5Q9BZZ5 524 aaKnown RBP16.22■□□□□ 0.19
DDX39A-202ENST00000324340 ABCC4O15439 1325 aa16.21■□□□□ 0.19
DDX39A-202ENST00000324340 PRAMEF22A3QJZ6 481 aa16.2■□□□□ 0.18
DDX39A-202ENST00000324340 ZNF772Q68DY9 489 aaPredicted RBP16.2■□□□□ 0.18
DDX39A-202ENST00000324340 FTSJ3Q8IY81 847 aaKnown RBP16.2■□□□□ 0.18
DDX39A-202ENST00000324340 CLUAP1Q96AJ1 413 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms