RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 MACROD2A1Z1Q3 448 aa8.86□□□□□ -0.99
LIMCH1-201ENST00000313860 HNRNPCL2B2RXH8 293 aa8.86□□□□□ -0.99
LIMCH1-201ENST00000313860 HNRNPCL1O60812 293 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-201ENST00000313860 TRIM60Q495X7 471 aa8.86□□□□□ -0.99
LIMCH1-201ENST00000313860 CEP112Q8N8E3 955 aa8.86□□□□□ -0.99
LIMCH1-201ENST00000313860 ZNF652Q9Y2D9 606 aa8.86□□□□□ -0.99
LIMCH1-201ENST00000313860 ESYT2A0FGR8 921 aa8.86□□□□□ -0.99
LIMCH1-201ENST00000313860 SMIM23A6NLE4 172 aa8.86□□□□□ -0.99
LIMCH1-201ENST00000313860 LUC7L3O95232 432 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-201ENST00000313860 KIF4BQ2VIQ3 1234 aa8.86□□□□□ -0.99
LIMCH1-201ENST00000313860 NBPF9Q3BBW0 867 aa8.86□□□□□ -0.99
LIMCH1-201ENST00000313860 RGS22Q8NE09 1264 aa8.86□□□□□ -0.99
LIMCH1-201ENST00000313860 BASP1P80723 227 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-201ENST00000313860 ZBTB16Q05516 673 aa8.86□□□□□ -0.99
LIMCH1-201ENST00000313860 MPRIPQ6WCQ1 1025 aa8.86□□□□□ -0.99
LIMCH1-201ENST00000313860 ZHX3Q9H4I2 956 aa8.86□□□□□ -0.99
LIMCH1-201ENST00000313860 NFKBIBQ15653 356 aa8.86□□□□□ -0.99
LIMCH1-201ENST00000313860 MX2P20592 715 aa8.86□□□□□ -0.99
LIMCH1-201ENST00000313860 PRPHP41219 470 aa8.86□□□□□ -0.99
LIMCH1-201ENST00000313860 MATR3P43243 847 aaKnown RBP eCLIP8.86□□□□□ -0.99
LIMCH1-201ENST00000313860 CCDC40Q4G0X9 1142 aa8.86□□□□□ -0.99
LIMCH1-201ENST00000313860 APLFQ8IW19 511 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-201ENST00000313860 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-201ENST00000313860 ATP6V1E2Q96A05 226 aa8.86□□□□□ -0.99
LIMCH1-201ENST00000313860 ABCF2Q9UG63 623 aa8.86□□□□□ -0.99
LIMCH1-201ENST00000313860 DESP17661 470 aa8.85□□□□□ -0.99
LIMCH1-201ENST00000313860 FAM180AQ6UWF9 173 aa8.85□□□□□ -0.99
LIMCH1-201ENST00000313860 PFDN4Q9NQP4 134 aa8.85□□□□□ -0.99
LIMCH1-201ENST00000313860 POTEB2H3BUK9 544 aa8.85□□□□□ -0.99
LIMCH1-201ENST00000313860 GCKP35557 465 aa8.85□□□□□ -0.99
LIMCH1-201ENST00000313860 CERS3Q8IU89 383 aa8.85□□□□□ -0.99
LIMCH1-201ENST00000313860 NBNO60934 754 aa8.85□□□□□ -0.99
LIMCH1-201ENST00000313860 PMS1P54277 932 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-201ENST00000313860 MAP3K9P80192 1104 aa8.85□□□□□ -0.99
LIMCH1-201ENST00000313860 KLHL34Q8N239 644 aa8.85□□□□□ -0.99
LIMCH1-201ENST00000313860 SDF4Q9BRK5 362 aa8.85□□□□□ -0.99
LIMCH1-201ENST00000313860 ABT1Q9ULW3 272 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-201ENST00000313860 FAF1Q9UNN5 650 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-201ENST00000313860 CEP131Q9UPN4 1083 aa8.85□□□□□ -0.99
LIMCH1-201ENST00000313860 GOLGA8QA0A0J9YX86 632 aa8.85□□□□□ -0.99
LIMCH1-201ENST00000313860 GOLGA8OA6NCC3 632 aa8.85□□□□□ -0.99
LIMCH1-201ENST00000313860 GOLGA8NF8WBI6 632 aa8.85□□□□□ -0.99
LIMCH1-201ENST00000313860 CAPN9O14815 690 aa8.85□□□□□ -0.99
LIMCH1-201ENST00000313860 CBFA2T2O43439 604 aa8.85□□□□□ -0.99
LIMCH1-201ENST00000313860 AMOTL1Q8IY63 956 aa8.85□□□□□ -0.99
LIMCH1-201ENST00000313860 SYTL2Q9HCH5 934 aa8.85□□□□□ -0.99
LIMCH1-201ENST00000313860 A0A1W2PRG0 241 aa8.85□□□□□ -0.99
LIMCH1-201ENST00000313860 PEX19P40855 299 aa8.85□□□□□ -0.99
LIMCH1-201ENST00000313860 NUF2Q9BZD4 464 aa8.85□□□□□ -0.99
LIMCH1-201ENST00000313860 JADE2Q9NQC1 790 aa8.85□□□□□ -0.99
LIMCH1-201ENST00000313860 HNRNPCP07910 306 aaKnown RBP eCLIP8.84□□□□□ -0.99
LIMCH1-201ENST00000313860 KLHL10Q6JEL2 608 aa8.84□□□□□ -0.99
LIMCH1-201ENST00000313860 UBXN4Q92575 508 aa8.84□□□□□ -0.99
LIMCH1-201ENST00000313860 SFMBT1Q9UHJ3 866 aa8.84□□□□□ -0.99
LIMCH1-201ENST00000313860 SUFUQ9UMX1 484 aa8.84□□□□□ -0.99
LIMCH1-201ENST00000313860 A0A1B0GUA9 196 aa8.84□□□□□ -0.99
LIMCH1-201ENST00000313860 LMNB2Q03252 620 aa8.84□□□□□ -0.99
LIMCH1-201ENST00000313860 ZNF365Q70YC5 407 aa8.84□□□□□ -0.99
LIMCH1-201ENST00000313860 NCAPGQ9BPX3 1015 aa8.84□□□□□ -0.99
LIMCH1-201ENST00000313860 KIF2AO00139 706 aaPredicted RBP8.84□□□□□ -0.99
LIMCH1-201ENST00000313860 TXNDC9O14530 226 aa8.84□□□□□ -0.99
LIMCH1-201ENST00000313860 KIF1CO43896 1103 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-201ENST00000313860 PDCLQ13371 301 aa8.84□□□□□ -0.99
LIMCH1-201ENST00000313860 RPAINQ86UA6 219 aa8.84□□□□□ -0.99
LIMCH1-201ENST00000313860 PNISRQ8TF01 805 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-201ENST00000313860 SPDL1Q96EA4 605 aa8.84□□□□□ -0.99
LIMCH1-201ENST00000313860 CCDC196A0A1B0GTZ2 297 aa8.84□□□□□ -0.99
LIMCH1-201ENST00000313860 SLC4A10Q6U841 1118 aa8.84□□□□□ -0.99
LIMCH1-201ENST00000313860 FMNL3Q8IVF7 1028 aa8.84□□□□□ -0.99
LIMCH1-201ENST00000313860 TRIML2Q8N7C3 387 aa8.84□□□□□ -0.99
LIMCH1-201ENST00000313860 PRC1O43663 620 aa8.84□□□□□ -1
LIMCH1-201ENST00000313860 PPP4R3BQ5MIZ7 849 aa8.84□□□□□ -1
LIMCH1-201ENST00000313860 LARP1Q6PKG0 1096 aaKnown RBP8.84□□□□□ -1
LIMCH1-201ENST00000313860 CPLX2Q6PUV4 134 aaKnown RBP8.84□□□□□ -1
LIMCH1-201ENST00000313860 EFCC1Q9HA90 598 aa8.84□□□□□ -1
LIMCH1-201ENST00000313860 ABCC9O60706 1549 aa8.83□□□□□ -1
LIMCH1-201ENST00000313860 FSD2A1L4K1 749 aa8.83□□□□□ -1
LIMCH1-201ENST00000313860 PALM3A6NDB9 673 aaPredicted RBP8.83□□□□□ -1
LIMCH1-201ENST00000313860 PSPC1Q8WXF1 523 aaKnown RBP8.83□□□□□ -1
LIMCH1-201ENST00000313860 LZTS3O60299 673 aaPredicted RBP8.83□□□□□ -1
LIMCH1-201ENST00000313860 MCCD1P59942 119 aaPredicted RBP8.83□□□□□ -1
LIMCH1-201ENST00000313860 LRRFIP1Q32MZ4 808 aaKnown RBP8.83□□□□□ -1
LIMCH1-201ENST00000313860 CCDC63Q8NA47 563 aa8.83□□□□□ -1
LIMCH1-201ENST00000313860 KLHDC4Q8TBB5 520 aa8.83□□□□□ -1
LIMCH1-201ENST00000313860 EXOC1Q9NV70 894 aa8.83□□□□□ -1
LIMCH1-201ENST00000313860 ATP2B1P20020 1258 aa8.83□□□□□ -1
LIMCH1-201ENST00000313860 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.83□□□□□ -12e-6■■■■■ 44.5
LIMCH1-201ENST00000313860 SYTL4Q96C24 671 aaPredicted RBP8.83□□□□□ -1
LIMCH1-201ENST00000313860 CARSP49589 748 aaKnown RBP8.83□□□□□ -1
LIMCH1-201ENST00000313860 CCDC144BQ3MJ40 725 aa8.83□□□□□ -1
LIMCH1-201ENST00000313860 NOL7Q9UMY1 257 aaKnown RBP8.83□□□□□ -1
LIMCH1-201ENST00000313860 DNAJC21Q5F1R6 531 aaKnown RBP8.82□□□□□ -1
LIMCH1-201ENST00000313860 LMNTD2Q8IXW0 634 aa8.82□□□□□ -1
LIMCH1-201ENST00000313860 MAP4K4O95819 1239 aaPredicted RBP8.82□□□□□ -1
LIMCH1-201ENST00000313860 CGNL1Q0VF96 1302 aa8.82□□□□□ -1
LIMCH1-201ENST00000313860 CTAGE15A4D2H0 777 aa8.82□□□□□ -1
LIMCH1-201ENST00000313860 SART3Q15020 963 aaKnown RBP8.82□□□□□ -1
LIMCH1-201ENST00000313860 TSG101Q99816 390 aa8.82□□□□□ -1
LIMCH1-201ENST00000313860 STIM2Q9P246 746 aa8.82□□□□□ -1
LIMCH1-201ENST00000313860 USO1O60763 962 aaKnown RBP8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms