RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 RWDD1Q9H446 243 aaPredicted RBP18.08■□□□□ 0.49
C9orf3-202ENST00000297979 ADAMTS7Q9UKP4 1686 aa18.08■□□□□ 0.49
C9orf3-202ENST00000297979 ROBO1Q9Y6N7 1651 aa18.08■□□□□ 0.49
C9orf3-202ENST00000297979 RNMTO43148 476 aaKnown RBP18.08■□□□□ 0.48
C9orf3-202ENST00000297979 TEFQ10587 303 aa18.08■□□□□ 0.48
C9orf3-202ENST00000297979 PTPRCP08575 1304 aa18.08■□□□□ 0.48
C9orf3-202ENST00000297979 RGS12O14924 1447 aa18.06■□□□□ 0.48
C9orf3-202ENST00000297979 SLC4A2P04920 1241 aa18.06■□□□□ 0.48
C9orf3-202ENST00000297979 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.06■□□□□ 0.488e-7■■■■■ 31.5
C9orf3-202ENST00000297979 SPG7Q9UQ90 795 aa18.06■□□□□ 0.48
C9orf3-202ENST00000297979 PKD1L3Q7Z443 1732 aa18.05■□□□□ 0.48
C9orf3-202ENST00000297979 STK31Q9BXU1 1019 aa18.05■□□□□ 0.48
C9orf3-202ENST00000297979 COL5A2P05997 1499 aaPredicted RBP18.05■□□□□ 0.48
C9orf3-202ENST00000297979 AHDC1Q5TGY3 1603 aaPredicted RBP18.05■□□□□ 0.48
C9orf3-202ENST00000297979 WDR17Q8IZU2 1322 aa18.05■□□□□ 0.48
C9orf3-202ENST00000297979 CCDC30Q5VVM6 783 aa18.05■□□□□ 0.48
C9orf3-202ENST00000297979 SIPA1L3O60292 1781 aaPredicted RBP18.05■□□□□ 0.48
C9orf3-202ENST00000297979 ZBTB7BO15156 539 aaPredicted RBP18.04■□□□□ 0.48
C9orf3-202ENST00000297979 HDAC1Q13547 482 aaPredicted RBP18.04■□□□□ 0.48
C9orf3-202ENST00000297979 NPM2Q86SE8 214 aaKnown RBP18.04■□□□□ 0.48
C9orf3-202ENST00000297979 BTBD11A6QL63 1104 aa18.04■□□□□ 0.48
C9orf3-202ENST00000297979 CACNA1FO60840 1977 aa18.03■□□□□ 0.48
C9orf3-202ENST00000297979 EIF4A1P60842 406 aaKnown RBP18.03■□□□□ 0.48
C9orf3-202ENST00000297979 SCN11AQ9UI33 1791 aa18.03■□□□□ 0.48
C9orf3-202ENST00000297979 INTS3Q68E01 1043 aaKnown RBP18.03■□□□□ 0.48
C9orf3-202ENST00000297979 PARP4Q9UKK3 1724 aaKnown RBP18.02■□□□□ 0.48
C9orf3-202ENST00000297979 FGD1P98174 961 aa18.02■□□□□ 0.48
C9orf3-202ENST00000297979 TAOK2Q9UL54 1235 aa18.02■□□□□ 0.47
C9orf3-202ENST00000297979 HOXB7P09629 217 aa18.01■□□□□ 0.47
C9orf3-202ENST00000297979 PHKG2P15735 406 aa18.01■□□□□ 0.47
C9orf3-202ENST00000297979 RGS3P49796 1198 aa18.01■□□□□ 0.47
C9orf3-202ENST00000297979 TOM1L2Q6ZVM7 507 aa18.01■□□□□ 0.47
C9orf3-202ENST00000297979 KDM6AO15550 1401 aaPredicted RBP18.01■□□□□ 0.47
C9orf3-202ENST00000297979 G2E3Q7L622 706 aa18■□□□□ 0.47
C9orf3-202ENST00000297979 IFNL2Q8IZJ0 200 aa18■□□□□ 0.47
C9orf3-202ENST00000297979 HDGFL1Q5TGJ6 251 aa18■□□□□ 0.47
C9orf3-202ENST00000297979 KCNQ3O43525 872 aa17.99■□□□□ 0.47
C9orf3-202ENST00000297979 COL22A1Q8NFW1 1626 aaPredicted RBP17.99■□□□□ 0.47
C9orf3-202ENST00000297979 NECTIN2Q92692 538 aa17.99■□□□□ 0.47
C9orf3-202ENST00000297979 CHMP4AQ9BY43 222 aa17.99■□□□□ 0.47
C9orf3-202ENST00000297979 PDE4AP27815 886 aa17.99■□□□□ 0.47
C9orf3-202ENST00000297979 FLIIQ13045 1269 aa17.98■□□□□ 0.47
C9orf3-202ENST00000297979 CARD10Q9BWT7 1032 aa17.97■□□□□ 0.47
C9orf3-202ENST00000297979 BACH2Q9BYV9 841 aa17.97■□□□□ 0.47
C9orf3-202ENST00000297979 PDZRN3Q9UPQ7 1066 aa17.97■□□□□ 0.47
C9orf3-202ENST00000297979 MRC1P22897 1456 aa17.97■□□□□ 0.47
C9orf3-202ENST00000297979 CYP27B1O15528 508 aa17.97■□□□□ 0.47
C9orf3-202ENST00000297979 DHX37Q8IY37 1157 aaKnown RBP17.97■□□□□ 0.47
C9orf3-202ENST00000297979 HSP90AB1P08238 724 aaKnown RBP17.96■□□□□ 0.47
C9orf3-202ENST00000297979 DCAF5Q96JK2 942 aa17.96■□□□□ 0.47
C9orf3-202ENST00000297979 C1orf115Q9H7X2 142 aa17.96■□□□□ 0.47
C9orf3-202ENST00000297979 SLC52A2Q9HAB3 445 aa17.96■□□□□ 0.47
C9orf3-202ENST00000297979 EVA1CP58658 441 aa17.96■□□□□ 0.47
C9orf3-202ENST00000297979 STRN4Q9NRL3 753 aa17.96■□□□□ 0.47
C9orf3-202ENST00000297979 COL14A1Q05707 1796 aaKnown RBP17.95■□□□□ 0.46
C9orf3-202ENST00000297979 FKBP5Q13451 457 aaPredicted RBP17.95■□□□□ 0.46
C9orf3-202ENST00000297979 SMC5Q8IY18 1101 aa17.95■□□□□ 0.46
C9orf3-202ENST00000297979 HEG1Q9ULI3 1381 aa17.95■□□□□ 0.46
C9orf3-202ENST00000297979 CCT4P50991 539 aaKnown RBP17.95■□□□□ 0.46
C9orf3-202ENST00000297979 EIF2S2P20042 333 aaKnown RBP17.94■□□□□ 0.46
C9orf3-202ENST00000297979 LARP1Q6PKG0 1096 aaKnown RBP17.94■□□□□ 0.46
C9orf3-202ENST00000297979 N4BP2Q86UW6 1770 aaPredicted RBP17.94■□□□□ 0.46
C9orf3-202ENST00000297979 PHLPP1O60346 1717 aa17.94■□□□□ 0.46
C9orf3-202ENST00000297979 F6X3S4 739 aa17.94■□□□□ 0.46
C9orf3-202ENST00000297979 PCDH11XQ9BZA7 1347 aa17.94■□□□□ 0.46
C9orf3-202ENST00000297979 PCDH11YQ9BZA8 1340 aa17.94■□□□□ 0.46
C9orf3-202ENST00000297979 SLC4A10Q6U841 1118 aa17.94■□□□□ 0.46
C9orf3-202ENST00000297979 IL2RBP14784 551 aa17.93■□□□□ 0.46
C9orf3-202ENST00000297979 PXDNLA1KZ92 1463 aa17.93■□□□□ 0.46
C9orf3-202ENST00000297979 GIGYF1O75420 1035 aaPredicted RBP17.93■□□□□ 0.46
C9orf3-202ENST00000297979 ZCRB1Q8TBF4 217 aaKnown RBP17.93■□□□□ 0.46
C9orf3-202ENST00000297979 COL16A1Q07092 1604 aaPredicted RBP17.93■□□□□ 0.46
C9orf3-202ENST00000297979 TAF7LQ5H9L4 462 aa17.92■□□□□ 0.46
C9orf3-202ENST00000297979 FAM161AQ3B820 660 aa17.92■□□□□ 0.46
C9orf3-202ENST00000297979 CHPF2Q9P2E5 772 aa17.92■□□□□ 0.46
C9orf3-202ENST00000297979 ZNF790Q6PG37 636 aa17.91■□□□□ 0.46
C9orf3-202ENST00000297979 NFATC2IPQ8NCF5 419 aa17.91■□□□□ 0.46
C9orf3-202ENST00000297979 BTG4Q9NY30 223 aa17.91■□□□□ 0.46
C9orf3-202ENST00000297979 SHANK3Q9BYB0 1731 aa17.91■□□□□ 0.46
C9orf3-202ENST00000297979 SIRT2Q8IXJ6 389 aa17.9■□□□□ 0.46
C9orf3-202ENST00000297979 MEIS3Q99687 375 aa17.9■□□□□ 0.46
C9orf3-202ENST00000297979 GCC1Q96CN9 775 aa17.9■□□□□ 0.46
C9orf3-202ENST00000297979 PHAXQ9H814 394 aaKnown RBP17.9■□□□□ 0.46
C9orf3-202ENST00000297979 ATP10DQ9P241 1426 aa17.9■□□□□ 0.46
C9orf3-202ENST00000297979 DBF4Q9UBU7 674 aaPredicted RBP17.9■□□□□ 0.46
C9orf3-202ENST00000297979 KCNA4P22459 653 aa17.89■□□□□ 0.45
C9orf3-202ENST00000297979 SLC39A6Q13433 755 aa17.89■□□□□ 0.45
C9orf3-202ENST00000297979 C8orf34Q49A92 452 aa17.89■□□□□ 0.45
C9orf3-202ENST00000297979 C5P01031 1676 aa17.88■□□□□ 0.45
C9orf3-202ENST00000297979 TOM1O60784 492 aa17.88■□□□□ 0.45
C9orf3-202ENST00000297979 CABP4P57796 275 aa17.88■□□□□ 0.45
C9orf3-202ENST00000297979 A0A0U1RQG5 324 aaPredicted RBP17.88■□□□□ 0.45
C9orf3-202ENST00000297979 NUCB1Q02818 461 aa17.88■□□□□ 0.45
C9orf3-202ENST00000297979 RPAP2Q8IXW5 612 aaPredicted RBP17.87■□□□□ 0.45
C9orf3-202ENST00000297979 ANKRD44Q8N8A2 993 aa17.87■□□□□ 0.45
C9orf3-202ENST00000297979 PRAMEF22A3QJZ6 481 aa17.87■□□□□ 0.45
C9orf3-202ENST00000297979 NKX1-1Q15270 411 aaPredicted RBP17.86■□□□□ 0.45
C9orf3-202ENST00000297979 TTC5Q8N0Z6 440 aa17.86■□□□□ 0.45
C9orf3-202ENST00000297979 CEP85Q6P2H3 762 aa17.86■□□□□ 0.45
C9orf3-202ENST00000297979 USP35Q9P2H5 1018 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 94.9 ms