RNA–Protein interactions for RNA: ENST00000295226.1

CCDC140-201, Transcript of coiled-coil domain containing 140, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CCDC140, Length 1,699 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140-201ENST00000295226 ADAMTS7Q9UKP4 1686 aa19.75■□□□□ 0.75
CCDC140-201ENST00000295226 PTF1AQ7RTS3 328 aa19.75■□□□□ 0.75
CCDC140-201ENST00000295226 ERVV-2B6SEH9 535 aa19.74■□□□□ 0.75
CCDC140-201ENST00000295226 KCNQ3O43525 872 aa19.74■□□□□ 0.75
CCDC140-201ENST00000295226 ZNF853P0CG23 659 aa19.74■□□□□ 0.75
CCDC140-201ENST00000295226 CALD1Q05682 793 aaKnown RBP19.74■□□□□ 0.75
CCDC140-201ENST00000295226 SLC39A6Q13433 755 aa19.73■□□□□ 0.75
CCDC140-201ENST00000295226 CFAP44Q96MT7 982 aa19.73■□□□□ 0.75
CCDC140-201ENST00000295226 MBIPQ9NS73 344 aa19.73■□□□□ 0.75
CCDC140-201ENST00000295226 IL16Q14005 1332 aa19.73■□□□□ 0.75
CCDC140-201ENST00000295226 BTBD11A6QL63 1104 aa19.72■□□□□ 0.75
CCDC140-201ENST00000295226 CHL1O00533 1208 aa19.72■□□□□ 0.75
CCDC140-201ENST00000295226 PIGBQ92521 554 aa19.72■□□□□ 0.75
CCDC140-201ENST00000295226 IFT57Q9NWB7 429 aa19.72■□□□□ 0.75
CCDC140-201ENST00000295226 TMOD3Q9NYL9 352 aa19.72■□□□□ 0.75
CCDC140-201ENST00000295226 TSPYL4Q9UJ04 414 aa19.72■□□□□ 0.75
CCDC140-201ENST00000295226 EP400Q96L91 3159 aa19.72■□□□□ 0.75
CCDC140-201ENST00000295226 DOT1LQ8TEK3 1739 aa19.72■□□□□ 0.75
CCDC140-201ENST00000295226 E9PSI1 815 aa19.71■□□□□ 0.75
CCDC140-201ENST00000295226 GNAI1P63096 354 aa19.71■□□□□ 0.75
CCDC140-201ENST00000295226 ITGB4P16144 1822 aa19.71■□□□□ 0.75
CCDC140-201ENST00000295226 DUSP27Q5VZP5 1158 aa19.71■□□□□ 0.75
CCDC140-201ENST00000295226 FANCIQ9NVI1 1328 aa19.7■□□□□ 0.74
CCDC140-201ENST00000295226 TRMT2AQ8IZ69 625 aaKnown RBP19.7■□□□□ 0.74
CCDC140-201ENST00000295226 SIPA1L3O60292 1781 aaPredicted RBP19.69■□□□□ 0.74
CCDC140-201ENST00000295226 KRT24Q2M2I5 525 aa19.69■□□□□ 0.74
CCDC140-201ENST00000295226 MRC1P22897 1456 aa19.69■□□□□ 0.74
CCDC140-201ENST00000295226 MYH16Q9H6N6 1097 aa19.68■□□□□ 0.74
CCDC140-201ENST00000295226 ASAP1Q9ULH1 1129 aa19.68■□□□□ 0.74
CCDC140-201ENST00000295226 FAM196AQ6ZSG2 479 aa19.68■□□□□ 0.74
CCDC140-201ENST00000295226 BCL9O00512 1426 aa19.66■□□□□ 0.74
CCDC140-201ENST00000295226 ELL2O00472 640 aaPredicted RBP19.66■□□□□ 0.74
CCDC140-201ENST00000295226 TRIM37O94972 964 aa19.66■□□□□ 0.74
CCDC140-201ENST00000295226 EXOSC9Q06265 439 aaKnown RBP19.66■□□□□ 0.74
CCDC140-201ENST00000295226 SBF2Q86WG5 1849 aa19.66■□□□□ 0.74
CCDC140-201ENST00000295226 ZNF790Q6PG37 636 aa19.65■□□□□ 0.74
CCDC140-201ENST00000295226 ATG3Q9NT62 314 aa19.65■□□□□ 0.74
CCDC140-201ENST00000295226 TSPYL6Q8N831 410 aa19.65■□□□□ 0.74
CCDC140-201ENST00000295226 C8orf58Q8NAV2 365 aa19.65■□□□□ 0.74
CCDC140-201ENST00000295226 PTCD1O75127 700 aaKnown RBP19.64■□□□□ 0.73
CCDC140-201ENST00000295226 EIF4A1P60842 406 aaKnown RBP19.63■□□□□ 0.73
CCDC140-201ENST00000295226 BABAM1Q9NWV8 329 aa19.63■□□□□ 0.73
CCDC140-201ENST00000295226 KDM3BQ7LBC6 1761 aa19.62■□□□□ 0.73
CCDC140-201ENST00000295226 TTC5Q8N0Z6 440 aa19.62■□□□□ 0.73
CCDC140-201ENST00000295226 ZNF496Q96IT1 587 aaPredicted RBP19.62■□□□□ 0.73
CCDC140-201ENST00000295226 PRAMEF22A3QJZ6 481 aa19.62■□□□□ 0.73
CCDC140-201ENST00000295226 BCL11BQ9C0K0 894 aaPredicted RBP19.61■□□□□ 0.73
CCDC140-201ENST00000295226 NHSQ6T4R5 1651 aa19.6■□□□□ 0.73
CCDC140-201ENST00000295226 RBM42Q9BTD8 480 aaKnown RBP19.6■□□□□ 0.73
CCDC140-201ENST00000295226 BTAF1O14981 1849 aa19.59■□□□□ 0.73
CCDC140-201ENST00000295226 TCERG1O14776 1098 aaKnown RBP19.58■□□□□ 0.72
CCDC140-201ENST00000295226 KCNQ4P56696 695 aa19.58■□□□□ 0.72
CCDC140-201ENST00000295226 TWISTNBQ3B726 338 aaPredicted RBP19.58■□□□□ 0.72
CCDC140-201ENST00000295226 NECTIN2Q92692 538 aa19.58■□□□□ 0.72
CCDC140-201ENST00000295226 FMNL2Q96PY5 1086 aa19.58■□□□□ 0.72
CCDC140-201ENST00000295226 SLC4A9Q96Q91 983 aa19.58■□□□□ 0.72
CCDC140-201ENST00000295226 PAPPAQ13219 1627 aa19.58■□□□□ 0.72
CCDC140-201ENST00000295226 KCPQ6ZWJ8 1503 aa19.57■□□□□ 0.72
CCDC140-201ENST00000295226 VAMP4O75379 141 aa19.56■□□□□ 0.72
CCDC140-201ENST00000295226 GIGYF1O75420 1035 aaPredicted RBP19.56■□□□□ 0.72
CCDC140-201ENST00000295226 PALLDQ8WX93 1383 aa19.56■□□□□ 0.72
CCDC140-201ENST00000295226 HEG1Q9ULI3 1381 aa19.55■□□□□ 0.72
CCDC140-201ENST00000295226 EIF2S2P20042 333 aaKnown RBP19.55■□□□□ 0.72
CCDC140-201ENST00000295226 USP16Q9Y5T5 823 aa19.55■□□□□ 0.72
CCDC140-201ENST00000295226 UBR2Q8IWV8 1755 aa19.54■□□□□ 0.72
CCDC140-201ENST00000295226 APBA3O96018 575 aa19.54■□□□□ 0.72
CCDC140-201ENST00000295226 SMARCC1Q92922 1105 aaPredicted RBP19.54■□□□□ 0.72
CCDC140-201ENST00000295226 LOC102724428A0A0B4J2F2 783 aa19.53■□□□□ 0.72
CCDC140-201ENST00000295226 SIK1P57059 783 aa19.53■□□□□ 0.72
CCDC140-201ENST00000295226 SNRPA1P09661 255 aaKnown RBP19.52■□□□□ 0.72
CCDC140-201ENST00000295226 DNAJC10Q8IXB1 793 aa19.52■□□□□ 0.72
CCDC140-201ENST00000295226 BCL2L13Q9BXK5 485 aa19.52■□□□□ 0.72
CCDC140-201ENST00000295226 ATP6V1AP38606 617 aa19.52■□□□□ 0.71
CCDC140-201ENST00000295226 C5P01031 1676 aa19.51■□□□□ 0.71
CCDC140-201ENST00000295226 ITPK1Q13572 414 aa19.51■□□□□ 0.71
CCDC140-201ENST00000295226 ILDR2Q71H61 639 aa19.51■□□□□ 0.71
CCDC140-201ENST00000295226 PIP4K2AP48426 406 aaPredicted RBP19.5■□□□□ 0.71
CCDC140-201ENST00000295226 RCAN3Q9UKA8 241 aa19.5■□□□□ 0.71
CCDC140-201ENST00000295226 BCAR3O75815 825 aa19.49■□□□□ 0.71
CCDC140-201ENST00000295226 HDGFL1Q5TGJ6 251 aa19.49■□□□□ 0.71
CCDC140-201ENST00000295226 SSH1Q8WYL5 1049 aa19.49■□□□□ 0.71
CCDC140-201ENST00000295226 ANXA1P04083 346 aa19.49■□□□□ 0.71
CCDC140-201ENST00000295226 RARSP54136 660 aaKnown RBP19.49■□□□□ 0.71
CCDC140-201ENST00000295226 VSIG10Q8N0Z9 540 aa19.48■□□□□ 0.71
CCDC140-201ENST00000295226 PROM2Q8N271 834 aa19.48■□□□□ 0.71
CCDC140-201ENST00000295226 CCNL1Q9UK58 526 aaPredicted RBP19.48■□□□□ 0.71
CCDC140-201ENST00000295226 TNS1Q9HBL0 1735 aaKnown RBP19.48■□□□□ 0.71
CCDC140-201ENST00000295226 A1BGP04217 495 aa19.47■□□□□ 0.71
CCDC140-201ENST00000295226 LRRC4BQ9NT99 713 aa19.47■□□□□ 0.71
CCDC140-201ENST00000295226 HOXB7P09629 217 aa19.46■□□□□ 0.71
CCDC140-201ENST00000295226 CT47B1P0C2W7 299 aaPredicted RBP19.46■□□□□ 0.71
CCDC140-201ENST00000295226 PROSER3Q2NL68 480 aa19.46■□□□□ 0.71
CCDC140-201ENST00000295226 CHPF2Q9P2E5 772 aa19.46■□□□□ 0.71
CCDC140-201ENST00000295226 CYP19A1P11511 503 aaPredicted RBP19.46■□□□□ 0.71
CCDC140-201ENST00000295226 EN1Q05925 392 aaPredicted RBP19.46■□□□□ 0.71
CCDC140-201ENST00000295226 CCDC30Q5VVM6 783 aa19.46■□□□□ 0.71
CCDC140-201ENST00000295226 DEFB132Q7Z7B7 95 aa19.46■□□□□ 0.71
CCDC140-201ENST00000295226 LINC00116Q8NCU8 138 aa19.46■□□□□ 0.71
CCDC140-201ENST00000295226 SMC4Q9NTJ3 1288 aa19.46■□□□□ 0.71
CCDC140-201ENST00000295226 LY75O60449 1722 aa19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms