RNA–Protein interactions for RNA: ENST00000288398.10

TPM1-202, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-202ENST00000288398 ERVV-2B6SEH9 535 aa19.13■□□□□ 0.65
TPM1-202ENST00000288398 CABP4P57796 275 aa19.12■□□□□ 0.65
TPM1-202ENST00000288398 LINC00116Q8NCU8 138 aa19.12■□□□□ 0.65
TPM1-202ENST00000288398 RBM42Q9BTD8 480 aaKnown RBP19.12■□□□□ 0.65
TPM1-202ENST00000288398 ATG3Q9NT62 314 aa19.12■□□□□ 0.65
TPM1-202ENST00000288398 MTHFSP49914 203 aa19.1■□□□□ 0.65
TPM1-202ENST00000288398 ITPK1Q13572 414 aa19.09■□□□□ 0.65
TPM1-202ENST00000288398 RTCBQ9Y3I0 505 aaKnown RBP19.09■□□□□ 0.65
TPM1-202ENST00000288398 SULT6B1Q6IMI4 303 aa19.08■□□□□ 0.64
TPM1-202ENST00000288398 UTRNP46939 3433 aa19.07■□□□□ 0.64
TPM1-202ENST00000288398 YBX3P16989 372 aaKnown RBP eCLIP19.07■□□□□ 0.64
TPM1-202ENST00000288398 SMIM5Q71RC9 77 aa19.07■□□□□ 0.64
TPM1-202ENST00000288398 AEBP1Q8IUX7 1158 aa19.07■□□□□ 0.64
TPM1-202ENST00000288398 UBR3Q6ZT12 1888 aa19.07■□□□□ 0.64
TPM1-202ENST00000288398 GIGYF1O75420 1035 aaPredicted RBP19.06■□□□□ 0.64
TPM1-202ENST00000288398 TRAPPC3LQ5T215 181 aa19.06■□□□□ 0.64
TPM1-202ENST00000288398 AMIGO3Q86WK7 504 aa19.06■□□□□ 0.64
TPM1-202ENST00000288398 KIF7Q2M1P5 1343 aa19.04■□□□□ 0.64
TPM1-202ENST00000288398 KDRP35968 1356 aa19.04■□□□□ 0.64
TPM1-202ENST00000288398 ADRA2BP18089 450 aa19.03■□□□□ 0.64
TPM1-202ENST00000288398 RFC4P35249 363 aa19.03■□□□□ 0.64
TPM1-202ENST00000288398 KDM6AO15550 1401 aaPredicted RBP19.02■□□□□ 0.64
TPM1-202ENST00000288398 PTCD1O75127 700 aaKnown RBP19.02■□□□□ 0.64
TPM1-202ENST00000288398 MMP10P09238 476 aa19.02■□□□□ 0.64
TPM1-202ENST00000288398 IL13P35225 146 aa19.02■□□□□ 0.64
TPM1-202ENST00000288398 C1QTNF8P60827 252 aa19.02■□□□□ 0.64
TPM1-202ENST00000288398 AMER1Q5JTC6 1135 aaPredicted RBP19.02■□□□□ 0.64
TPM1-202ENST00000288398 RC3H1Q5TC82 1133 aaKnown RBP19.02■□□□□ 0.64
TPM1-202ENST00000288398 NLGN1Q8N2Q7 840 aa19.02■□□□□ 0.64
TPM1-202ENST00000288398 CNTNAP4Q9C0A0 1308 aa19.01■□□□□ 0.63
TPM1-202ENST00000288398 SENP3-EIF4A1A0A087X0R7 540 aa19.01■□□□□ 0.63
TPM1-202ENST00000288398 NFATC2IPQ8NCF5 419 aa19.01■□□□□ 0.63
TPM1-202ENST00000288398 AKAP4Q5JQC9 854 aa19■□□□□ 0.63
TPM1-202ENST00000288398 CC2D1BQ5T0F9 858 aaKnown RBP19■□□□□ 0.63
TPM1-202ENST00000288398 WWC3Q9ULE0 1092 aa19■□□□□ 0.63
TPM1-202ENST00000288398 RPS6KA4O75676 772 aa18.99■□□□□ 0.63
TPM1-202ENST00000288398 GOLGB1Q14789 3259 aaKnown RBP18.99■□□□□ 0.63
TPM1-202ENST00000288398 ZNF831Q5JPB2 1677 aa18.98■□□□□ 0.63
TPM1-202ENST00000288398 DIAPH1O60610 1272 aaKnown RBP18.98■□□□□ 0.63
TPM1-202ENST00000288398 ARHGEF1Q92888 912 aaKnown RBP18.98■□□□□ 0.63
TPM1-202ENST00000288398 SLC4A9Q96Q91 983 aa18.98■□□□□ 0.63
TPM1-202ENST00000288398 CCDC87Q9NVE4 849 aa18.98■□□□□ 0.63
TPM1-202ENST00000288398 PARP3Q9Y6F1 533 aa18.98■□□□□ 0.63
TPM1-202ENST00000288398 HMOX1P09601 288 aa18.97■□□□□ 0.63
TPM1-202ENST00000288398 CNGB1Q14028 1251 aaPredicted RBP18.97■□□□□ 0.63
TPM1-202ENST00000288398 CRKLP46109 303 aaKnown RBP18.96■□□□□ 0.63
TPM1-202ENST00000288398 ATP10DQ9P241 1426 aa18.95■□□□□ 0.62
TPM1-202ENST00000288398 SLC52A2Q9HAB3 445 aa18.95■□□□□ 0.62
TPM1-202ENST00000288398 GPBP1L1Q9HC44 474 aaPredicted RBP18.95■□□□□ 0.62
TPM1-202ENST00000288398 CICQ96RK0 1608 aaPredicted RBP18.94■□□□□ 0.62
TPM1-202ENST00000288398 TGFB2P61812 414 aa18.94■□□□□ 0.62
TPM1-202ENST00000288398 COL5A3P25940 1745 aaPredicted RBP18.94■□□□□ 0.62
TPM1-202ENST00000288398 GYS1P13807 737 aa18.93■□□□□ 0.62
TPM1-202ENST00000288398 U2SURPO15042 1029 aaKnown RBP18.92■□□□□ 0.62
TPM1-202ENST00000288398 ZNF526Q8TF50 670 aaPredicted RBP18.92■□□□□ 0.62
TPM1-202ENST00000288398 BCS1LQ9Y276 419 aa18.92■□□□□ 0.62
TPM1-202ENST00000288398 PER1O15534 1290 aaPredicted RBP18.91■□□□□ 0.62
TPM1-202ENST00000288398 RNMTO43148 476 aaKnown RBP18.91■□□□□ 0.62
TPM1-202ENST00000288398 ZPR1O75312 459 aa18.91■□□□□ 0.62
TPM1-202ENST00000288398 SCN11AQ9UI33 1791 aa18.91■□□□□ 0.62
TPM1-202ENST00000288398 A0A0G2JLW4 131 aa18.9■□□□□ 0.62
TPM1-202ENST00000288398 TTC5Q8N0Z6 440 aa18.9■□□□□ 0.62
TPM1-202ENST00000288398 LGR6Q9HBX8 967 aa18.9■□□□□ 0.62
TPM1-202ENST00000288398 C10orf71Q711Q0 1435 aa18.9■□□□□ 0.62
TPM1-202ENST00000288398 PXDNLA1KZ92 1463 aa18.9■□□□□ 0.62
TPM1-202ENST00000288398 MTHFSDQ2M296 383 aaKnown RBP18.89■□□□□ 0.61
TPM1-202ENST00000288398 DNAJC10Q8IXB1 793 aa18.89■□□□□ 0.61
TPM1-202ENST00000288398 CFAP53Q96M91 514 aa18.89■□□□□ 0.61
TPM1-202ENST00000288398 USP42Q9H9J4 1324 aaKnown RBP18.89■□□□□ 0.61
TPM1-202ENST00000288398 C4AP0C0L4 1744 aa18.88■□□□□ 0.61
TPM1-202ENST00000288398 FCHSD2O94868 740 aa18.88■□□□□ 0.61
TPM1-202ENST00000288398 SRP68Q9UHB9 627 aaKnown RBP18.88■□□□□ 0.61
TPM1-202ENST00000288398 NPC1L1Q9UHC9 1359 aa18.88■□□□□ 0.61
TPM1-202ENST00000288398 TEFQ10587 303 aa18.87■□□□□ 0.61
TPM1-202ENST00000288398 SLC39A6Q13433 755 aa18.87■□□□□ 0.61
TPM1-202ENST00000288398 ARHGAP27Q6ZUM4 889 aa18.87■□□□□ 0.61
TPM1-202ENST00000288398 GAS2L2Q8NHY3 880 aa18.87■□□□□ 0.61
TPM1-202ENST00000288398 MRC1P22897 1456 aa18.86■□□□□ 0.61
TPM1-202ENST00000288398 DPEP1P16444 411 aa18.86■□□□□ 0.61
TPM1-202ENST00000288398 INTS5Q6P9B9 1019 aaKnown RBP18.86■□□□□ 0.61
TPM1-202ENST00000288398 TJP1Q07157 1748 aa18.86■□□□□ 0.61
TPM1-202ENST00000288398 ADCY9O60503 1353 aa18.85■□□□□ 0.61
TPM1-202ENST00000288398 FKBP8Q14318 412 aa18.85■□□□□ 0.61
TPM1-202ENST00000288398 MYH14Q7Z406 1995 aaKnown RBP18.84■□□□□ 0.61
TPM1-202ENST00000288398 KIF13BQ9NQT8 1826 aa18.84■□□□□ 0.61
TPM1-202ENST00000288398 GNAT3A8MTJ3 354 aa18.84■□□□□ 0.61
TPM1-202ENST00000288398 STARD3NLO95772 234 aa18.84■□□□□ 0.61
TPM1-202ENST00000288398 USPL1Q5W0Q7 1092 aa18.84■□□□□ 0.61
TPM1-202ENST00000288398 VSIG10Q8N0Z9 540 aa18.84■□□□□ 0.61
TPM1-202ENST00000288398 PIM2Q9P1W9 311 aa18.84■□□□□ 0.61
TPM1-202ENST00000288398 NUDCQ9Y266 331 aa18.84■□□□□ 0.61
TPM1-202ENST00000288398 N4BP2Q86UW6 1770 aaPredicted RBP18.83■□□□□ 0.61
TPM1-202ENST00000288398 SOS1Q07889 1333 aaPredicted RBP18.83■□□□□ 0.61
TPM1-202ENST00000288398 CYP19A1P11511 503 aaPredicted RBP18.83■□□□□ 0.6
TPM1-202ENST00000288398 NPM2Q86SE8 214 aaKnown RBP18.83■□□□□ 0.6
TPM1-202ENST00000288398 COL15A1P39059 1388 aa18.82■□□□□ 0.6
TPM1-202ENST00000288398 DALRD3Q5D0E6 543 aaKnown RBP18.82■□□□□ 0.6
TPM1-202ENST00000288398 DDR1Q08345 913 aa18.81■□□□□ 0.6
TPM1-202ENST00000288398 A0A087WZG4 1122 aa18.8■□□□□ 0.6
TPM1-202ENST00000288398 CANXP27824 592 aaKnown RBP18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms