RNA–Protein interactions for RNA: ENST00000286349.3

TRIM42-201, Transcript of tripartite motif containing 42, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM42, Length 2,539 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM42-201ENST00000286349 COL18A1P39060 1754 aa9.52□□□□□ -0.89
TRIM42-201ENST00000286349 CAMTA1Q9Y6Y1 1673 aa9.52□□□□□ -0.89
TRIM42-201ENST00000286349 EIF4A2Q14240 407 aaKnown RBP9.52□□□□□ -0.89
TRIM42-201ENST00000286349 TMED8Q6PL24 325 aaPredicted RBP9.52□□□□□ -0.89
TRIM42-201ENST00000286349 FLT4P35916 1363 aa9.51□□□□□ -0.89
TRIM42-201ENST00000286349 FNBP4Q8N3X1 1017 aaPredicted RBP9.51□□□□□ -0.89
TRIM42-201ENST00000286349 C8orf37Q96NL8 207 aa9.51□□□□□ -0.89
TRIM42-201ENST00000286349 BTG4Q9NY30 223 aa9.51□□□□□ -0.89
TRIM42-201ENST00000286349 USP35Q9P2H5 1018 aa9.51□□□□□ -0.89
TRIM42-201ENST00000286349 DDX19BQ9UMR2 479 aa9.51□□□□□ -0.89
TRIM42-201ENST00000286349 RGS3P49796 1198 aa9.51□□□□□ -0.89
TRIM42-201ENST00000286349 ATF7IPQ6VMQ6 1270 aa9.51□□□□□ -0.89
TRIM42-201ENST00000286349 RGS22Q8NE09 1264 aa9.51□□□□□ -0.89
TRIM42-201ENST00000286349 PHACTR3Q96KR7 559 aa9.51□□□□□ -0.89
TRIM42-201ENST00000286349 RWDD1Q9H446 243 aaPredicted RBP9.51□□□□□ -0.89
TRIM42-201ENST00000286349 ZNF853P0CG23 659 aa9.5□□□□□ -0.89
TRIM42-201ENST00000286349 FAM193AP78312 1265 aa9.5□□□□□ -0.89
TRIM42-201ENST00000286349 ANKRD24Q8TF21 1146 aa9.5□□□□□ -0.89
TRIM42-201ENST00000286349 SSH1Q8WYL5 1049 aa9.5□□□□□ -0.89
TRIM42-201ENST00000286349 LTV1Q96GA3 475 aaPredicted RBP9.5□□□□□ -0.89
TRIM42-201ENST00000286349 RGPD1P0DJD0 1748 aa9.5□□□□□ -0.89
TRIM42-201ENST00000286349 SLIT2O94813 1529 aa9.5□□□□□ -0.89
TRIM42-201ENST00000286349 MMP14P50281 582 aa9.5□□□□□ -0.89
TRIM42-201ENST00000286349 SETQ01105 290 aaPredicted RBP9.5□□□□□ -0.89
TRIM42-201ENST00000286349 ARHGAP45Q92619 1136 aa9.5□□□□□ -0.89
TRIM42-201ENST00000286349 NGLY1Q96IV0 654 aa9.5□□□□□ -0.89
TRIM42-201ENST00000286349 IPO9Q96P70 1041 aaKnown RBP9.5□□□□□ -0.89
TRIM42-201ENST00000286349 BCL2L13Q9BXK5 485 aa9.5□□□□□ -0.89
TRIM42-201ENST00000286349 BCL9LQ86UU0 1499 aa9.5□□□□□ -0.89
TRIM42-201ENST00000286349 LMO7Q8WWI1 1683 aa9.5□□□□□ -0.89
TRIM42-201ENST00000286349 RTL1A6NKG5 1358 aa9.5□□□□□ -0.89
TRIM42-201ENST00000286349 FAM161AQ3B820 660 aa9.49□□□□□ -0.89
TRIM42-201ENST00000286349 NBPF6Q5VWK0 638 aa9.49□□□□□ -0.89
TRIM42-201ENST00000286349 LARP1Q6PKG0 1096 aaKnown RBP9.49□□□□□ -0.89
TRIM42-201ENST00000286349 NBPF4Q96M43 638 aa9.49□□□□□ -0.89
TRIM42-201ENST00000286349 ERBB3P21860 1342 aa9.49□□□□□ -0.89
TRIM42-201ENST00000286349 EYA1Q99502 592 aa9.49□□□□□ -0.89
TRIM42-201ENST00000286349 TRIM27P14373 513 aa9.48□□□□□ -0.89
TRIM42-201ENST00000286349 SULT6B1Q6IMI4 303 aa9.48□□□□□ -0.89
TRIM42-201ENST00000286349 STRN4Q9NRL3 753 aa9.48□□□□□ -0.89
TRIM42-201ENST00000286349 ZBTB47Q9UFB7 747 aaPredicted RBP9.48□□□□□ -0.89
TRIM42-201ENST00000286349 RGS17Q9UGC6 210 aaPredicted RBP9.48□□□□□ -0.89
TRIM42-201ENST00000286349 LTN1O94822 1766 aa9.48□□□□□ -0.89
TRIM42-201ENST00000286349 COL5A2P05997 1499 aaPredicted RBP9.48□□□□□ -0.89
TRIM42-201ENST00000286349 RLBP1P12271 317 aa9.48□□□□□ -0.89
TRIM42-201ENST00000286349 MEX3CQ5U5Q3 659 aaKnown RBP9.48□□□□□ -0.89
TRIM42-201ENST00000286349 ANP32BQ92688 251 aaKnown RBP9.48□□□□□ -0.89
TRIM42-201ENST00000286349 NOB1Q9ULX3 412 aaKnown RBP9.48□□□□□ -0.89
TRIM42-201ENST00000286349 AFF2P51816 1311 aa9.47□□□□□ -0.89
TRIM42-201ENST00000286349 IGHDP01880 384 aa9.47□□□□□ -0.89
TRIM42-201ENST00000286349 UNC5CLQ8IV45 518 aa9.47□□□□□ -0.89
TRIM42-201ENST00000286349 USHBP1Q8N6Y0 703 aa9.47□□□□□ -0.89
TRIM42-201ENST00000286349 ZNF622Q969S3 477 aaKnown RBP eCLIP9.47□□□□□ -0.89
TRIM42-201ENST00000286349 ZNF830Q96NB3 372 aaPredicted RBP9.47□□□□□ -0.89
TRIM42-201ENST00000286349 LAS1LQ9Y4W2 734 aaKnown RBP9.47□□□□□ -0.89
TRIM42-201ENST00000286349 KDRP35968 1356 aa9.47□□□□□ -0.89
TRIM42-201ENST00000286349 EVA1CP58658 441 aa9.47□□□□□ -0.89
TRIM42-201ENST00000286349 AEBP1Q8IUX7 1158 aa9.47□□□□□ -0.89
TRIM42-201ENST00000286349 DDRGK1Q96HY6 314 aa9.47□□□□□ -0.89
TRIM42-201ENST00000286349 MBIPQ9NS73 344 aa9.47□□□□□ -0.89
TRIM42-201ENST00000286349 COL14A1Q05707 1796 aaKnown RBP9.47□□□□□ -0.89
TRIM42-201ENST00000286349 WDR17Q8IZU2 1322 aa9.47□□□□□ -0.89
TRIM42-201ENST00000286349 DLG5Q8TDM6 1919 aa9.46□□□□□ -0.89
TRIM42-201ENST00000286349 VAMP4O75379 141 aa9.46□□□□□ -0.89
TRIM42-201ENST00000286349 USP21Q9UK80 565 aa9.46□□□□□ -0.89
TRIM42-201ENST00000286349 RGPD5Q99666 1765 aa9.46□□□□□ -0.9
TRIM42-201ENST00000286349 HTATSF1O43719 755 aaKnown RBP9.46□□□□□ -0.9
TRIM42-201ENST00000286349 HDAC1Q13547 482 aaPredicted RBP9.46□□□□□ -0.9
TRIM42-201ENST00000286349 ITPRIPQ8IWB1 547 aa9.46□□□□□ -0.9
TRIM42-201ENST00000286349 GAS2L2Q8NHY3 880 aa9.46□□□□□ -0.9
TRIM42-201ENST00000286349 ABCC6O95255 1503 aa9.46□□□□□ -0.9
TRIM42-201ENST00000286349 IGSF1Q8N6C5 1336 aa9.46□□□□□ -0.9
TRIM42-201ENST00000286349 TWISTNBQ3B726 338 aaPredicted RBP9.45□□□□□ -0.9
TRIM42-201ENST00000286349 FAM43BQ6ZT52 329 aaPredicted RBP9.45□□□□□ -0.9
TRIM42-201ENST00000286349 NLRP2Q9NX02 1062 aa9.45□□□□□ -0.9
TRIM42-201ENST00000286349 PHF14O94880 888 aa9.45□□□□□ -0.9
TRIM42-201ENST00000286349 CSB-PGBD3P0DP91 1061 aa9.45□□□□□ -0.9
TRIM42-201ENST00000286349 AXDND1Q5T1B0 1012 aaPredicted RBP9.45□□□□□ -0.9
TRIM42-201ENST00000286349 MRPL50Q8N5N7 158 aaKnown RBP9.45□□□□□ -0.9
TRIM42-201ENST00000286349 CARD10Q9BWT7 1032 aa9.45□□□□□ -0.9
TRIM42-201ENST00000286349 API5Q9BZZ5 524 aaKnown RBP9.45□□□□□ -0.9
TRIM42-201ENST00000286349 PDCL3Q9H2J4 239 aa9.45□□□□□ -0.9
TRIM42-201ENST00000286349 PCDHB15Q9Y5E8 787 aa9.45□□□□□ -0.9
TRIM42-201ENST00000286349 VPS72Q15906 364 aa9.44□□□□□ -0.9
TRIM42-201ENST00000286349 TOM1L2Q6ZVM7 507 aa9.44□□□□□ -0.9
TRIM42-201ENST00000286349 RTF1Q92541 710 aaKnown RBP9.44□□□□□ -0.9
TRIM42-201ENST00000286349 TMEM51Q9NW97 253 aa9.44□□□□□ -0.9
TRIM42-201ENST00000286349 SPATA31A5Q5VU36 1347 aa9.44□□□□□ -0.9
TRIM42-201ENST00000286349 SPATA31A7Q8IWB4 1347 aa9.44□□□□□ -0.9
TRIM42-201ENST00000286349 PLCH1Q4KWH8 1693 aa9.44□□□□□ -0.9
TRIM42-201ENST00000286349 NCAPD2Q15021 1401 aa9.44□□□□□ -0.9
TRIM42-201ENST00000286349 CHL1O00533 1208 aa9.44□□□□□ -0.9
TRIM42-201ENST00000286349 QTRT2Q9H974 415 aaKnown RBP9.44□□□□□ -0.9
TRIM42-201ENST00000286349 SPATA31A1Q5TZJ5 1347 aa9.44□□□□□ -0.9
TRIM42-201ENST00000286349 IRX3P78415 501 aaPredicted RBP9.43□□□□□ -0.9
TRIM42-201ENST00000286349 CC2D2BQ6DHV5 1058 aa9.43□□□□□ -0.9
TRIM42-201ENST00000286349 TMEM57Q8N5G2 664 aa9.43□□□□□ -0.9
TRIM42-201ENST00000286349 THUMPD2Q9BTF0 503 aaKnown RBP9.43□□□□□ -0.9
TRIM42-201ENST00000286349 TNNQ9UQP3 1299 aa9.43□□□□□ -0.9
TRIM42-201ENST00000286349 NRAPQ86VF7 1730 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms