RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 DDB1Q16531 1140 aa14.28□□□□□ -0.12
VPS4A-201ENST00000254950 TEX13AQ9BXU3 409 aaPredicted RBP14.28□□□□□ -0.12
VPS4A-201ENST00000254950 NOP58Q9Y2X3 529 aaKnown RBP14.28□□□□□ -0.12
VPS4A-201ENST00000254950 MYO3AQ8NEV4 1616 aa14.27□□□□□ -0.13
VPS4A-201ENST00000254950 UBR1Q8IWV7 1749 aa14.27□□□□□ -0.13
VPS4A-201ENST00000254950 CLASRPQ8N2M8 674 aaKnown RBP14.27□□□□□ -0.13
VPS4A-201ENST00000254950 MSH5O43196 834 aa14.26□□□□□ -0.13
VPS4A-201ENST00000254950 LGR6Q9HBX8 967 aa14.26□□□□□ -0.13
VPS4A-201ENST00000254950 HSP90B1P14625 803 aaKnown RBP14.26□□□□□ -0.13
VPS4A-201ENST00000254950 FGD1P98174 961 aa14.26□□□□□ -0.13
VPS4A-201ENST00000254950 ERBB3P21860 1342 aa14.26□□□□□ -0.13
VPS4A-201ENST00000254950 ANXA1P04083 346 aa14.26□□□□□ -0.13
VPS4A-201ENST00000254950 TRMT2AQ8IZ69 625 aaKnown RBP14.26□□□□□ -0.13
VPS4A-201ENST00000254950 RNF123Q5XPI4 1314 aa14.25□□□□□ -0.13
VPS4A-201ENST00000254950 CDCA7Q9BWT1 371 aaPredicted RBP14.25□□□□□ -0.13
VPS4A-201ENST00000254950 CHPF2Q9P2E5 772 aa14.25□□□□□ -0.13
VPS4A-201ENST00000254950 PI4KAP2A4QPH2 592 aa14.25□□□□□ -0.13
VPS4A-201ENST00000254950 SRGAP3O43295 1099 aa14.25□□□□□ -0.13
VPS4A-201ENST00000254950 PI4KAP1Q8N8J0 262 aa14.25□□□□□ -0.13
VPS4A-201ENST00000254950 TMX4Q9H1E5 349 aaPredicted RBP14.25□□□□□ -0.13
VPS4A-201ENST00000254950 ERC1Q8IUD2 1116 aa14.24□□□□□ -0.13
VPS4A-201ENST00000254950 IL17REQ8NFR9 667 aa14.24□□□□□ -0.13
VPS4A-201ENST00000254950 IFT172Q9UG01 1749 aa14.24□□□□□ -0.13
VPS4A-201ENST00000254950 ERC2O15083 957 aa14.24□□□□□ -0.13
VPS4A-201ENST00000254950 CHD1LQ86WJ1 897 aa14.24□□□□□ -0.13
VPS4A-201ENST00000254950 OVOS2A0A0J9YW53 1432 aa14.23□□□□□ -0.13
VPS4A-201ENST00000254950 OVOS2Q6IE36 1432 aa14.23□□□□□ -0.13
VPS4A-201ENST00000254950 HOXB7P09629 217 aa14.23□□□□□ -0.13
VPS4A-201ENST00000254950 RLBP1P12271 317 aa14.23□□□□□ -0.13
VPS4A-201ENST00000254950 NBR1Q14596 966 aa14.23□□□□□ -0.13
VPS4A-201ENST00000254950 TNNQ9UQP3 1299 aa14.23□□□□□ -0.13
VPS4A-201ENST00000254950 MYD88Q99836 296 aa14.23□□□□□ -0.13
VPS4A-201ENST00000254950 LRRCC1Q9C099 1032 aa14.23□□□□□ -0.13
VPS4A-201ENST00000254950 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.23□□□□□ -0.131e-7■□□□□ 11
VPS4A-201ENST00000254950 TNS3Q68CZ2 1445 aa14.23□□□□□ -0.13
VPS4A-201ENST00000254950 KAT6BQ8WYB5 2073 aa14.23□□□□□ -0.13
VPS4A-201ENST00000254950 FAM177BA6PVY3 158 aa14.22□□□□□ -0.13
VPS4A-201ENST00000254950 MAP3K2Q9Y2U5 619 aa14.22□□□□□ -0.13
VPS4A-201ENST00000254950 NCOA3Q9Y6Q9 1424 aa14.22□□□□□ -0.13
VPS4A-201ENST00000254950 ZNF790Q6PG37 636 aa14.22□□□□□ -0.13
VPS4A-201ENST00000254950 DIAPH3Q9NSV4 1193 aa14.22□□□□□ -0.13
VPS4A-201ENST00000254950 PHF23Q9BUL5 403 aaPredicted RBP14.22□□□□□ -0.13
VPS4A-201ENST00000254950 REC8O95072 547 aa14.21□□□□□ -0.13
VPS4A-201ENST00000254950 SLC52A2Q9HAB3 445 aa14.21□□□□□ -0.13
VPS4A-201ENST00000254950 RUFY2Q8WXA3 655 aa14.21□□□□□ -0.13
VPS4A-201ENST00000254950 WDR17Q8IZU2 1322 aa14.21□□□□□ -0.13
VPS4A-201ENST00000254950 CARD10Q9BWT7 1032 aa14.21□□□□□ -0.14
VPS4A-201ENST00000254950 IPO9Q96P70 1041 aaKnown RBP14.2□□□□□ -0.14
VPS4A-201ENST00000254950 PHKG2P15735 406 aa14.2□□□□□ -0.14
VPS4A-201ENST00000254950 INTS3Q68E01 1043 aaKnown RBP14.2□□□□□ -0.14
VPS4A-201ENST00000254950 ANKRD13DQ6ZTN6 518 aa14.2□□□□□ -0.14
VPS4A-201ENST00000254950 LRRFIP2Q9Y608 721 aaKnown RBP14.2□□□□□ -0.14
VPS4A-201ENST00000254950 CDC45O75419 566 aa14.2□□□□□ -0.14
VPS4A-201ENST00000254950 FRAT2O75474 233 aaPredicted RBP14.2□□□□□ -0.14
VPS4A-201ENST00000254950 LRRFIP1Q32MZ4 808 aaKnown RBP14.2□□□□□ -0.14
VPS4A-201ENST00000254950 XAGE3Q8WTP9 111 aa14.2□□□□□ -0.14
VPS4A-201ENST00000254950 NEUROD6Q96NK8 337 aa14.2□□□□□ -0.14
VPS4A-201ENST00000254950 PCDHB15Q9Y5E8 787 aa14.2□□□□□ -0.14
VPS4A-201ENST00000254950 HMGB2P26583 209 aaKnown RBP14.19□□□□□ -0.14
VPS4A-201ENST00000254950 COPS6Q7L5N1 327 aa14.19□□□□□ -0.14
VPS4A-201ENST00000254950 EXOC6BQ9Y2D4 811 aa14.19□□□□□ -0.14
VPS4A-201ENST00000254950 HSP90AB3PQ58FF7 597 aa14.19□□□□□ -0.14
VPS4A-201ENST00000254950 KSR2Q6VAB6 950 aa14.19□□□□□ -0.14
VPS4A-201ENST00000254950 MEIS3Q99687 375 aa14.19□□□□□ -0.14
VPS4A-201ENST00000254950 ZBTB3Q9H5J0 574 aa14.19□□□□□ -0.14
VPS4A-201ENST00000254950 CD163L1Q9NR16 1453 aa14.18□□□□□ -0.14
VPS4A-201ENST00000254950 GOLGA6L22H0YM25 854 aa14.18□□□□□ -0.14
VPS4A-201ENST00000254950 SMARCC1Q92922 1105 aaPredicted RBP14.18□□□□□ -0.14
VPS4A-201ENST00000254950 DDX21Q9NR30 783 aaKnown RBP eCLIP14.18□□□□□ -0.14
VPS4A-201ENST00000254950 ACSBG1Q96GR2 724 aa14.18□□□□□ -0.14
VPS4A-201ENST00000254950 DCCP43146 1447 aa14.18□□□□□ -0.14
VPS4A-201ENST00000254950 EIF4A1P60842 406 aaKnown RBP14.18□□□□□ -0.14
VPS4A-201ENST00000254950 IGHDP01880 384 aa14.17□□□□□ -0.14
VPS4A-201ENST00000254950 HDAC1Q13547 482 aaPredicted RBP14.17□□□□□ -0.14
VPS4A-201ENST00000254950 SIL1Q9H173 461 aa14.17□□□□□ -0.14
VPS4A-201ENST00000254950 ALDH1L1O75891 902 aa14.17□□□□□ -0.14
VPS4A-201ENST00000254950 AXIN2Q9Y2T1 843 aa14.17□□□□□ -0.14
VPS4A-201ENST00000254950 A0A087WZG4 1122 aa14.17□□□□□ -0.14
VPS4A-201ENST00000254950 CCDC57Q2TAC2 916 aa14.17□□□□□ -0.14
VPS4A-201ENST00000254950 ZNF652Q9Y2D9 606 aa14.17□□□□□ -0.14
VPS4A-201ENST00000254950 ZNF853P0CG23 659 aa14.17□□□□□ -0.14
VPS4A-201ENST00000254950 G2E3Q7L622 706 aa14.16□□□□□ -0.14
VPS4A-201ENST00000254950 KIF1BPQ96EK5 621 aa14.16□□□□□ -0.14
VPS4A-201ENST00000254950 NAP1L2Q9ULW6 460 aaPredicted RBP14.16□□□□□ -0.14
VPS4A-201ENST00000254950 ERVV-2B6SEH9 535 aa14.16□□□□□ -0.14
VPS4A-201ENST00000254950 ZBTB40Q9NUA8 1239 aa14.16□□□□□ -0.14
VPS4A-201ENST00000254950 USP32Q8NFA0 1604 aa14.16□□□□□ -0.14
VPS4A-201ENST00000254950 RAB11FIP3O75154 756 aa14.15□□□□□ -0.14
VPS4A-201ENST00000254950 LINS1Q8NG48 757 aa14.15□□□□□ -0.14
VPS4A-201ENST00000254950 BACH2Q9BYV9 841 aa14.15□□□□□ -0.14
VPS4A-201ENST00000254950 IL1RAPL2Q9NP60 686 aa14.15□□□□□ -0.14
VPS4A-201ENST00000254950 CNTROBQ8N137 903 aa14.15□□□□□ -0.14
VPS4A-201ENST00000254950 SPRYD3Q8NCJ5 442 aa14.15□□□□□ -0.14
VPS4A-201ENST00000254950 PHAXQ9H814 394 aaKnown RBP14.15□□□□□ -0.14
VPS4A-201ENST00000254950 ATP5J2-PTCD1G3V325 749 aa14.15□□□□□ -0.14
VPS4A-201ENST00000254950 ZNF496Q96IT1 587 aaPredicted RBP14.15□□□□□ -0.14
VPS4A-201ENST00000254950 ANO2Q9NQ90 1003 aa14.15□□□□□ -0.14
VPS4A-201ENST00000254950 ITSN1Q15811 1721 aa14.15□□□□□ -0.14
VPS4A-201ENST00000254950 ANKRD44Q8N8A2 993 aa14.14□□□□□ -0.15
VPS4A-201ENST00000254950 ST18O60284 1047 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 115.7 ms