RNA–Protein interactions for RNA: ENST00000238688.9

SLIRP-201, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SLIRP, Length 394 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-201ENST00000238688 FKBP8Q14318 412 aa17.18■□□□□ 0.34
SLIRP-201ENST00000238688 AKT1S1Q96B36 256 aa17.18■□□□□ 0.34
SLIRP-201ENST00000238688 EYA1Q99502 592 aa17.18■□□□□ 0.34
SLIRP-201ENST00000238688 MYH16Q9H6N6 1097 aa17.18■□□□□ 0.34
SLIRP-201ENST00000238688 COL24A1Q17RW2 1714 aa17.18■□□□□ 0.34
SLIRP-201ENST00000238688 TMPOP42166 694 aaKnown RBP17.17■□□□□ 0.34
SLIRP-201ENST00000238688 KCNQ4P56696 695 aa17.17■□□□□ 0.34
SLIRP-201ENST00000238688 SYTL4Q96C24 671 aaPredicted RBP17.17■□□□□ 0.34
SLIRP-201ENST00000238688 SGIP1Q9BQI5 828 aa17.17■□□□□ 0.34
SLIRP-201ENST00000238688 TAF1LQ8IZX4 1826 aa17.17■□□□□ 0.34
SLIRP-201ENST00000238688 KDRP35968 1356 aa17.16■□□□□ 0.34
SLIRP-201ENST00000238688 SLC27A3Q5K4L6 730 aa17.16■□□□□ 0.34
SLIRP-201ENST00000238688 PLEKHG2Q9H7P9 1386 aa17.15■□□□□ 0.34
SLIRP-201ENST00000238688 EIF4A2Q14240 407 aaKnown RBP17.15■□□□□ 0.34
SLIRP-201ENST00000238688 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.15■□□□□ 0.34
SLIRP-201ENST00000238688 ATF5Q9Y2D1 282 aaPredicted RBP17.15■□□□□ 0.34
SLIRP-201ENST00000238688 DLG5Q8TDM6 1919 aa17.15■□□□□ 0.34
SLIRP-201ENST00000238688 PCDH11XQ9BZA7 1347 aa17.15■□□□□ 0.34
SLIRP-201ENST00000238688 PCDH11YQ9BZA8 1340 aa17.15■□□□□ 0.34
SLIRP-201ENST00000238688 SALL2Q9Y467 1007 aaPredicted RBP17.14■□□□□ 0.33
SLIRP-201ENST00000238688 NKX1-1Q15270 411 aaPredicted RBP17.13■□□□□ 0.33
SLIRP-201ENST00000238688 NFE2L2Q16236 605 aa17.13■□□□□ 0.33
SLIRP-201ENST00000238688 CDCA7LQ96GN5 454 aa17.13■□□□□ 0.33
SLIRP-201ENST00000238688 PRKAR2BP31323 418 aa17.12■□□□□ 0.33
SLIRP-201ENST00000238688 RRP1P56182 461 aaKnown RBP17.12■□□□□ 0.33
SLIRP-201ENST00000238688 MTFR1LQ9H019 292 aa17.12■□□□□ 0.33
SLIRP-201ENST00000238688 PPP1R1BQ9UD71 204 aaPredicted RBP17.12■□□□□ 0.33
SLIRP-201ENST00000238688 PNPLA7Q6ZV29 1317 aa17.12■□□□□ 0.33
SLIRP-201ENST00000238688 IGSF1Q8N6C5 1336 aa17.12■□□□□ 0.33
SLIRP-201ENST00000238688 C5P01031 1676 aa17.11■□□□□ 0.33
SLIRP-201ENST00000238688 ZNF428Q96B54 188 aa17.11■□□□□ 0.33
SLIRP-201ENST00000238688 PPP4R2Q9NY27 417 aa17.1■□□□□ 0.33
SLIRP-201ENST00000238688 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.1■□□□□ 0.33
SLIRP-201ENST00000238688 RIPK4P57078 832 aa17.09■□□□□ 0.33
SLIRP-201ENST00000238688 CCNL1Q9UK58 526 aaPredicted RBP17.09■□□□□ 0.33
SLIRP-201ENST00000238688 MPRIPQ6WCQ1 1025 aa17.08■□□□□ 0.32
SLIRP-201ENST00000238688 PIGBQ92521 554 aa17.08■□□□□ 0.32
SLIRP-201ENST00000238688 TRIM35Q9UPQ4 493 aa17.07■□□□□ 0.32
SLIRP-201ENST00000238688 SPG7Q9UQ90 795 aa17.07■□□□□ 0.32
SLIRP-201ENST00000238688 PALLDQ8WX93 1383 aa17.06■□□□□ 0.32
SLIRP-201ENST00000238688 HTATSF1O43719 755 aaKnown RBP17.06■□□□□ 0.32
SLIRP-201ENST00000238688 PHKG2P15735 406 aa17.06■□□□□ 0.32
SLIRP-201ENST00000238688 UBR3Q6ZT12 1888 aa17.05■□□□□ 0.32
SLIRP-201ENST00000238688 SULT6B1Q6IMI4 303 aa17.05■□□□□ 0.32
SLIRP-201ENST00000238688 GAS2L2Q8NHY3 880 aa17.05■□□□□ 0.32
SLIRP-201ENST00000238688 SLC16A10Q8TF71 515 aa17.05■□□□□ 0.32
SLIRP-201ENST00000238688 SYT17Q9BSW7 474 aa17.05■□□□□ 0.32
SLIRP-201ENST00000238688 FHDC1Q9C0D6 1143 aaPredicted RBP17.05■□□□□ 0.32
SLIRP-201ENST00000238688 C4BP0C0L5 1744 aa17.04■□□□□ 0.32
SLIRP-201ENST00000238688 GNAI1P63096 354 aa17.04■□□□□ 0.32
SLIRP-201ENST00000238688 AAMPQ13685 434 aa17.04■□□□□ 0.32
SLIRP-201ENST00000238688 NEUROD2Q15784 382 aa17.04■□□□□ 0.32
SLIRP-201ENST00000238688 COL23A1Q86Y22 540 aaPredicted RBP17.04■□□□□ 0.32
SLIRP-201ENST00000238688 AEBP1Q8IUX7 1158 aa17.04■□□□□ 0.32
SLIRP-201ENST00000238688 IFNL2Q8IZJ0 200 aa17.04■□□□□ 0.32
SLIRP-201ENST00000238688 IFT57Q9NWB7 429 aa17.04■□□□□ 0.32
SLIRP-201ENST00000238688 TFCP2L1Q9NZI6 479 aa17.04■□□□□ 0.32
SLIRP-201ENST00000238688 RRP7AQ9Y3A4 280 aaKnown RBP17.04■□□□□ 0.32
SLIRP-201ENST00000238688 HMOX1P09601 288 aa17.03■□□□□ 0.32
SLIRP-201ENST00000238688 ARXQ96QS3 562 aa17.03■□□□□ 0.32
SLIRP-201ENST00000238688 AMIGO3Q86WK7 504 aa17.02■□□□□ 0.32
SLIRP-201ENST00000238688 MAP3K5Q99683 1374 aa17.02■□□□□ 0.31
SLIRP-201ENST00000238688 VIRMAQ69YN4 1812 aaKnown RBP17.01■□□□□ 0.31
SLIRP-201ENST00000238688 MS4A1P11836 297 aa17.01■□□□□ 0.31
SLIRP-201ENST00000238688 SMARCC1Q92922 1105 aaPredicted RBP17.01■□□□□ 0.31
SLIRP-201ENST00000238688 PHACTR3Q96KR7 559 aa17.01■□□□□ 0.31
SLIRP-201ENST00000238688 SPINK5Q9NQ38 1064 aaPredicted RBP17.01■□□□□ 0.31
SLIRP-201ENST00000238688 ASAP1Q9ULH1 1129 aa17.01■□□□□ 0.31
SLIRP-201ENST00000238688 FANCIQ9NVI1 1328 aa17■□□□□ 0.31
SLIRP-201ENST00000238688 KDM6AO15550 1401 aaPredicted RBP17■□□□□ 0.31
SLIRP-201ENST00000238688 PDE3AQ14432 1141 aa17■□□□□ 0.31
SLIRP-201ENST00000238688 SENP3-EIF4A1A0A087X0R7 540 aa16.99■□□□□ 0.31
SLIRP-201ENST00000238688 CFAP44Q96MT7 982 aa16.99■□□□□ 0.31
SLIRP-201ENST00000238688 ATG3Q9NT62 314 aa16.99■□□□□ 0.31
SLIRP-201ENST00000238688 BABAM1Q9NWV8 329 aa16.99■□□□□ 0.31
SLIRP-201ENST00000238688 CHD4Q14839 1912 aa16.99■□□□□ 0.31
SLIRP-201ENST00000238688 SCN11AQ9UI33 1791 aa16.99■□□□□ 0.31
SLIRP-201ENST00000238688 ZNF831Q5JPB2 1677 aa16.98■□□□□ 0.31
SLIRP-201ENST00000238688 LOC102724428A0A0B4J2F2 783 aa16.98■□□□□ 0.31
SLIRP-201ENST00000238688 ZNF853P0CG23 659 aa16.98■□□□□ 0.31
SLIRP-201ENST00000238688 SIK1P57059 783 aa16.98■□□□□ 0.31
SLIRP-201ENST00000238688 ITPK1Q13572 414 aa16.98■□□□□ 0.31
SLIRP-201ENST00000238688 SMIM5Q71RC9 77 aa16.98■□□□□ 0.31
SLIRP-201ENST00000238688 TMOD3Q9NYL9 352 aa16.98■□□□□ 0.31
SLIRP-201ENST00000238688 CACNA1FO60840 1977 aa16.98■□□□□ 0.31
SLIRP-201ENST00000238688 MYH14Q7Z406 1995 aaKnown RBP16.98■□□□□ 0.31
SLIRP-201ENST00000238688 SOS1Q07889 1333 aaPredicted RBP16.97■□□□□ 0.31
SLIRP-201ENST00000238688 UTRNP46939 3433 aa16.97■□□□□ 0.31
SLIRP-201ENST00000238688 BRPF1P55201 1214 aaPredicted RBP16.97■□□□□ 0.31
SLIRP-201ENST00000238688 ALDH1L2Q3SY69 923 aa16.97■□□□□ 0.31
SLIRP-201ENST00000238688 PLEKHO1Q53GL0 409 aaPredicted RBP16.97■□□□□ 0.31
SLIRP-201ENST00000238688 LINC00116Q8NCU8 138 aa16.97■□□□□ 0.31
SLIRP-201ENST00000238688 SLC4A9Q96Q91 983 aa16.97■□□□□ 0.31
SLIRP-201ENST00000238688 COL5A3P25940 1745 aaPredicted RBP16.96■□□□□ 0.31
SLIRP-201ENST00000238688 ERVV-2B6SEH9 535 aa16.96■□□□□ 0.31
SLIRP-201ENST00000238688 ZNF530Q6P9A1 599 aaPredicted RBP16.96■□□□□ 0.31
SLIRP-201ENST00000238688 RARSP54136 660 aaKnown RBP16.95■□□□□ 0.3
SLIRP-201ENST00000238688 AMOTQ4VCS5 1084 aa16.95■□□□□ 0.3
SLIRP-201ENST00000238688 RTF1Q92541 710 aaKnown RBP16.95■□□□□ 0.3
SLIRP-201ENST00000238688 DCAF5Q96JK2 942 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms