RNA–Protein interactions for RNA: ENST00000232888.6

RRP9-201, Transcript of ribosomal RNA processing 9, U3 small nucleolar RNA binding protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RRP9, Length 1,578 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RRP9-201ENST00000232888 STRN4Q9NRL3 753 aa30.27■■■□□ 2.44
RRP9-201ENST00000232888 EIF4A1P60842 406 aaKnown RBP30.26■■■□□ 2.43
RRP9-201ENST00000232888 LARP1Q6PKG0 1096 aaKnown RBP30.26■■■□□ 2.43
RRP9-201ENST00000232888 ABCC4O15439 1325 aa30.26■■■□□ 2.43
RRP9-201ENST00000232888 PIP4K2BP78356 416 aa30.25■■■□□ 2.43
RRP9-201ENST00000232888 ITPRIPQ8IWB1 547 aa30.25■■■□□ 2.43
RRP9-201ENST00000232888 TMEM57Q8N5G2 664 aa30.25■■■□□ 2.43
RRP9-201ENST00000232888 STK31Q9BXU1 1019 aa30.25■■■□□ 2.43
RRP9-201ENST00000232888 BTG4Q9NY30 223 aa30.25■■■□□ 2.43
RRP9-201ENST00000232888 ZCRB1Q8TBF4 217 aaKnown RBP30.24■■■□□ 2.43
RRP9-201ENST00000232888 PCDH11XQ9BZA7 1347 aa30.24■■■□□ 2.43
RRP9-201ENST00000232888 PCDH11YQ9BZA8 1340 aa30.24■■■□□ 2.43
RRP9-201ENST00000232888 TCERG1O14776 1098 aaKnown RBP30.24■■■□□ 2.43
RRP9-201ENST00000232888 CYP27B1O15528 508 aa30.23■■■□□ 2.43
RRP9-201ENST00000232888 SCN11AQ9UI33 1791 aa30.23■■■□□ 2.43
RRP9-201ENST00000232888 KDM6AO15550 1401 aaPredicted RBP30.23■■■□□ 2.43
RRP9-201ENST00000232888 SLC4A2P04920 1241 aa30.22■■■□□ 2.43
RRP9-201ENST00000232888 SLC52A2Q9HAB3 445 aa30.22■■■□□ 2.43
RRP9-201ENST00000232888 VIRMAQ69YN4 1812 aaKnown RBP30.22■■■□□ 2.43
RRP9-201ENST00000232888 SIPA1L3O60292 1781 aaPredicted RBP30.21■■■□□ 2.43
RRP9-201ENST00000232888 MRC1P22897 1456 aa30.2■■■□□ 2.43
RRP9-201ENST00000232888 NKX1-1Q15270 411 aaPredicted RBP30.18■■■□□ 2.42
RRP9-201ENST00000232888 HEG1Q9ULI3 1381 aa30.18■■■□□ 2.42
RRP9-201ENST00000232888 ZBTB40Q9NUA8 1239 aa30.17■■■□□ 2.42
RRP9-201ENST00000232888 CACNA1FO60840 1977 aa30.16■■■□□ 2.42
RRP9-201ENST00000232888 HDGFL1Q5TGJ6 251 aa30.15■■■□□ 2.42
RRP9-201ENST00000232888 INTS3Q68E01 1043 aaKnown RBP30.15■■■□□ 2.42
RRP9-201ENST00000232888 RWDD1Q9H446 243 aaPredicted RBP30.15■■■□□ 2.42
RRP9-201ENST00000232888 CERKQ8TCT0 537 aa30.14■■■□□ 2.42
RRP9-201ENST00000232888 RGS12O14924 1447 aa30.13■■■□□ 2.41
RRP9-201ENST00000232888 KCNQ3O43525 872 aa30.13■■■□□ 2.41
RRP9-201ENST00000232888 PCDHB15Q9Y5E8 787 aa30.13■■■□□ 2.41
RRP9-201ENST00000232888 ERVV-2B6SEH9 535 aa30.12■■■□□ 2.41
RRP9-201ENST00000232888 ZBTB7BO15156 539 aaPredicted RBP30.12■■■□□ 2.41
RRP9-201ENST00000232888 ZNF790Q6PG37 636 aa30.11■■■□□ 2.41
RRP9-201ENST00000232888 NFATC2IPQ8NCF5 419 aa30.11■■■□□ 2.41
RRP9-201ENST00000232888 GIGYF1O75420 1035 aaPredicted RBP30.11■■■□□ 2.41
RRP9-201ENST00000232888 JCADQ9P266 1359 aa30.1■■■□□ 2.41
RRP9-201ENST00000232888 IGHDP01880 384 aa30.1■■■□□ 2.41
RRP9-201ENST00000232888 CABP4P57796 275 aa30.1■■■□□ 2.41
RRP9-201ENST00000232888 DISP2A7MBM2 1401 aa30.1■■■□□ 2.41
RRP9-201ENST00000232888 CDCA7Q9BWT1 371 aaPredicted RBP30.09■■■□□ 2.41
RRP9-201ENST00000232888 ADAMTS2O95450 1211 aa30.08■■■□□ 2.41
RRP9-201ENST00000232888 FLIIQ13045 1269 aa30.08■■■□□ 2.41
RRP9-201ENST00000232888 HDAC1Q13547 482 aaPredicted RBP30.08■■■□□ 2.41
RRP9-201ENST00000232888 THRAP3Q9Y2W1 955 aaKnown RBP30.08■■■□□ 2.41
RRP9-201ENST00000232888 PLCH1Q4KWH8 1693 aa30.08■■■□□ 2.41
RRP9-201ENST00000232888 G2E3Q7L622 706 aa30.07■■■□□ 2.4
RRP9-201ENST00000232888 CCT4P50991 539 aaKnown RBP30.07■■■□□ 2.4
RRP9-201ENST00000232888 TSHZ2Q9NRE2 1034 aa30.07■■■□□ 2.4
RRP9-201ENST00000232888 TTC5Q8N0Z6 440 aa30.05■■■□□ 2.4
RRP9-201ENST00000232888 USP35Q9P2H5 1018 aa30.05■■■□□ 2.4
RRP9-201ENST00000232888 DBF4Q9UBU7 674 aaPredicted RBP30.05■■■□□ 2.4
RRP9-201ENST00000232888 SHANK3Q9BYB0 1731 aa30.04■■■□□ 2.4
RRP9-201ENST00000232888 NWD2Q9ULI1 1742 aa30.04■■■□□ 2.4
RRP9-201ENST00000232888 NUTM2BA6NNL0 878 aaPredicted RBP30.03■■■□□ 2.4
RRP9-201ENST00000232888 NUTM2EB1AL46 878 aaPredicted RBP30.03■■■□□ 2.4
RRP9-201ENST00000232888 EIF2S2P20042 333 aaKnown RBP30.03■■■□□ 2.4
RRP9-201ENST00000232888 NUTM2AQ8IVF1 878 aaPredicted RBP30.03■■■□□ 2.4
RRP9-201ENST00000232888 NRAPQ86VF7 1730 aa30.03■■■□□ 2.4
RRP9-201ENST00000232888 FKBP5Q13451 457 aaPredicted RBP30.03■■■□□ 2.4
RRP9-201ENST00000232888 DDX54Q8TDD1 881 aaKnown RBP30.03■■■□□ 2.4
RRP9-201ENST00000232888 NECTIN2Q92692 538 aa30.03■■■□□ 2.4
RRP9-201ENST00000232888 SLIT2O94813 1529 aa30.02■■■□□ 2.4
RRP9-201ENST00000232888 FMNL2Q96PY5 1086 aa30.01■■■□□ 2.39
RRP9-201ENST00000232888 PXDNLA1KZ92 1463 aa30.01■■■□□ 2.39
RRP9-201ENST00000232888 SLC39A6Q13433 755 aa30■■■□□ 2.39
RRP9-201ENST00000232888 SPATA31A1Q5TZJ5 1347 aa30■■■□□ 2.39
RRP9-201ENST00000232888 SPATA31A6Q5VVP1 1343 aa30■■■□□ 2.39
RRP9-201ENST00000232888 CHPF2Q9P2E5 772 aa29.99■■■□□ 2.39
RRP9-201ENST00000232888 SNRPA1P09661 255 aaKnown RBP29.98■■■□□ 2.39
RRP9-201ENST00000232888 EXOC5O00471 708 aa29.98■■■□□ 2.39
RRP9-201ENST00000232888 HYPKQ9NX55 129 aa29.98■■■□□ 2.39
RRP9-201ENST00000232888 ZNF496Q96IT1 587 aaPredicted RBP29.97■■■□□ 2.39
RRP9-201ENST00000232888 DDX21Q9NR30 783 aaKnown RBP eCLIP29.95■■■□□ 2.39
RRP9-201ENST00000232888 SPATA31A5Q5VU36 1347 aa29.95■■■□□ 2.39
RRP9-201ENST00000232888 SPATA31A7Q8IWB4 1347 aa29.95■■■□□ 2.39
RRP9-201ENST00000232888 WNK3Q9BYP7 1800 aa29.95■■■□□ 2.38
RRP9-201ENST00000232888 F6X3S4 739 aa29.94■■■□□ 2.38
RRP9-201ENST00000232888 SLC4A10Q6U841 1118 aa29.94■■■□□ 2.38
RRP9-201ENST00000232888 BARGINQ6ZT62 677 aa29.94■■■□□ 2.38
RRP9-201ENST00000232888 PHAXQ9H814 394 aaKnown RBP29.94■■■□□ 2.38
RRP9-201ENST00000232888 TNS2Q63HR2 1409 aa29.94■■■□□ 2.38
RRP9-201ENST00000232888 LRP6O75581 1613 aa29.93■■■□□ 2.38
RRP9-201ENST00000232888 UNC5CLQ8IV45 518 aa29.92■■■□□ 2.38
RRP9-201ENST00000232888 SMC5Q8IY18 1101 aa29.92■■■□□ 2.38
RRP9-201ENST00000232888 N4BP2Q86UW6 1770 aaPredicted RBP29.91■■■□□ 2.38
RRP9-201ENST00000232888 RPAP2Q8IXW5 612 aaPredicted RBP29.9■■■□□ 2.38
RRP9-201ENST00000232888 TMOD3Q9NYL9 352 aa29.9■■■□□ 2.38
RRP9-201ENST00000232888 PAPPAQ13219 1627 aa29.89■■■□□ 2.38
RRP9-201ENST00000232888 ERBB4Q15303 1308 aa29.89■■■□□ 2.38
RRP9-201ENST00000232888 PRAMEF22A3QJZ6 481 aa29.89■■■□□ 2.38
RRP9-201ENST00000232888 GNAI3P08754 354 aa29.89■■■□□ 2.38
RRP9-201ENST00000232888 FNBP4Q8N3X1 1017 aaPredicted RBP29.88■■■□□ 2.37
RRP9-201ENST00000232888 GCC1Q96CN9 775 aa29.88■■■□□ 2.37
RRP9-201ENST00000232888 DDX58O95786 925 aaKnown RBP29.87■■■□□ 2.37
RRP9-201ENST00000232888 DNAAF4Q8WXU2 420 aa29.87■■■□□ 2.37
RRP9-201ENST00000232888 NGLY1Q96IV0 654 aa29.87■■■□□ 2.37
RRP9-201ENST00000232888 UBR2Q8IWV8 1755 aa29.87■■■□□ 2.37
RRP9-201ENST00000232888 PDIA6Q15084 440 aa29.86■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms