RNA–Protein interactions for RNA: ENST00000230085.12

SNX3-201, Transcript of sorting nexin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX3, Length 1,755 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3-201ENST00000230085 SMC5Q8IY18 1101 aa25.77■■□□□ 1.72
SNX3-201ENST00000230085 DZIP1LQ8IYY4 767 aaKnown RBP25.77■■□□□ 1.72
SNX3-201ENST00000230085 SLKQ9H2G2 1235 aaPredicted RBP25.77■■□□□ 1.72
SNX3-201ENST00000230085 ONECUT3O60422 494 aaPredicted RBP25.77■■□□□ 1.72
SNX3-201ENST00000230085 HMOX1P09601 288 aa25.77■■□□□ 1.72
SNX3-201ENST00000230085 NCAPD2Q15021 1401 aa25.76■■□□□ 1.71
SNX3-201ENST00000230085 A0A0G2JS52 829 aa25.76■■□□□ 1.71
SNX3-201ENST00000230085 IL2RBP14784 551 aa25.75■■□□□ 1.71
SNX3-201ENST00000230085 U2AF1L5P0DN76 240 aaPredicted RBP25.74■■□□□ 1.71
SNX3-201ENST00000230085 U2AF1Q01081 240 aaKnown RBP eCLIP25.74■■□□□ 1.71
SNX3-201ENST00000230085 ZBTB4Q9P1Z0 1013 aaPredicted RBP25.74■■□□□ 1.71
SNX3-201ENST00000230085 DDX19BQ9UMR2 479 aa25.74■■□□□ 1.71
SNX3-201ENST00000230085 C22orf23Q9BZE7 217 aa25.74■■□□□ 1.71
SNX3-201ENST00000230085 DDIT3P35638 169 aa25.73■■□□□ 1.71
SNX3-201ENST00000230085 SEPT12Q8IYM1 358 aa25.73■■□□□ 1.71
SNX3-201ENST00000230085 RAPGEF4Q8WZA2 1011 aa25.73■■□□□ 1.71
SNX3-201ENST00000230085 SNX21Q969T3 373 aa25.73■■□□□ 1.71
SNX3-201ENST00000230085 DISP2A7MBM2 1401 aa25.73■■□□□ 1.71
SNX3-201ENST00000230085 GOLGA6L3A6NEY3 463 aa25.72■■□□□ 1.71
SNX3-201ENST00000230085 KDRP35968 1356 aa25.72■■□□□ 1.71
SNX3-201ENST00000230085 MEGF6O75095 1541 aa25.72■■□□□ 1.71
SNX3-201ENST00000230085 WNK3Q9BYP7 1800 aa25.71■■□□□ 1.71
SNX3-201ENST00000230085 RBM25P49756 843 aaKnown RBP25.71■■□□□ 1.71
SNX3-201ENST00000230085 TNNQ9UQP3 1299 aa25.71■■□□□ 1.71
SNX3-201ENST00000230085 CDCA7Q9BWT1 371 aaPredicted RBP25.7■■□□□ 1.7
SNX3-201ENST00000230085 CIZ1Q9ULV3 898 aaPredicted RBP25.7■■□□□ 1.7
SNX3-201ENST00000230085 RRP7AQ9Y3A4 280 aaKnown RBP25.7■■□□□ 1.7
SNX3-201ENST00000230085 DDX11L8A8MPP1 907 aa25.69■■□□□ 1.7
SNX3-201ENST00000230085 TATP17735 454 aaPredicted RBP25.69■■□□□ 1.7
SNX3-201ENST00000230085 BRPF1P55201 1214 aaPredicted RBP25.69■■□□□ 1.7
SNX3-201ENST00000230085 THSD7AQ9UPZ6 1657 aa25.69■■□□□ 1.7
SNX3-201ENST00000230085 RGS12O14924 1447 aa25.69■■□□□ 1.7
SNX3-201ENST00000230085 XRCC6P12956 609 aaKnown RBP eCLIP25.69■■□□□ 1.7
SNX3-201ENST00000230085 PLEKHF1Q96S99 279 aa25.69■■□□□ 1.7
SNX3-201ENST00000230085 MRE11P49959 708 aa25.67■■□□□ 1.7
SNX3-201ENST00000230085 DDB1Q16531 1140 aa25.67■■□□□ 1.7
SNX3-201ENST00000230085 FTSJ3Q8IY81 847 aaKnown RBP25.67■■□□□ 1.7
SNX3-201ENST00000230085 RRAGDQ9NQL2 400 aaPredicted RBP25.67■■□□□ 1.7
SNX3-201ENST00000230085 EXOC5O00471 708 aa25.67■■□□□ 1.7
SNX3-201ENST00000230085 CLCN1P35523 988 aa25.67■■□□□ 1.7
SNX3-201ENST00000230085 ZNF428Q96B54 188 aa25.67■■□□□ 1.7
SNX3-201ENST00000230085 ATF7IPQ6VMQ6 1270 aa25.66■■□□□ 1.7
SNX3-201ENST00000230085 KIF16BQ96L93 1317 aa25.66■■□□□ 1.7
SNX3-201ENST00000230085 OVOS2A0A0G2JMS6 1433 aa25.66■■□□□ 1.7
SNX3-201ENST00000230085 PARP4Q9UKK3 1724 aaKnown RBP25.65■■□□□ 1.7
SNX3-201ENST00000230085 EP400Q96L91 3159 aa25.65■■□□□ 1.7
SNX3-201ENST00000230085 FCHSD2O94868 740 aa25.65■■□□□ 1.7
SNX3-201ENST00000230085 TRIM27P14373 513 aa25.65■■□□□ 1.7
SNX3-201ENST00000230085 PTMSP20962 102 aa25.65■■□□□ 1.7
SNX3-201ENST00000230085 NEUROD2Q15784 382 aa25.65■■□□□ 1.7
SNX3-201ENST00000230085 PRKAR2BP31323 418 aa25.64■■□□□ 1.7
SNX3-201ENST00000230085 BRWD3Q6RI45 1802 aa25.64■■□□□ 1.69
SNX3-201ENST00000230085 ZCRB1Q8TBF4 217 aaKnown RBP25.64■■□□□ 1.69
SNX3-201ENST00000230085 ZBTB40Q9NUA8 1239 aa25.64■■□□□ 1.69
SNX3-201ENST00000230085 LRRC37A3O60309 1634 aa25.63■■□□□ 1.69
SNX3-201ENST00000230085 ALDH1L2Q3SY69 923 aa25.63■■□□□ 1.69
SNX3-201ENST00000230085 TRAK2O60296 914 aa25.62■■□□□ 1.69
SNX3-201ENST00000230085 TMPOP42166 694 aaKnown RBP25.61■■□□□ 1.69
SNX3-201ENST00000230085 FAM182BQ5T319 152 aa25.61■■□□□ 1.69
SNX3-201ENST00000230085 HSCBQ8IWL3 235 aa25.61■■□□□ 1.69
SNX3-201ENST00000230085 DDX54Q8TDD1 881 aaKnown RBP25.61■■□□□ 1.69
SNX3-201ENST00000230085 PHACTR3Q96KR7 559 aa25.61■■□□□ 1.69
SNX3-201ENST00000230085 BCL2L13Q9BXK5 485 aa25.61■■□□□ 1.69
SNX3-201ENST00000230085 TRIM35Q9UPQ4 493 aa25.61■■□□□ 1.69
SNX3-201ENST00000230085 NUCB1Q02818 461 aa25.6■■□□□ 1.69
SNX3-201ENST00000230085 KRT27Q7Z3Y8 459 aa25.6■■□□□ 1.69
SNX3-201ENST00000230085 SMC4Q9NTJ3 1288 aa25.6■■□□□ 1.69
SNX3-201ENST00000230085 TNS2Q63HR2 1409 aa25.6■■□□□ 1.69
SNX3-201ENST00000230085 IPO8O15397 1037 aaKnown RBP25.59■■□□□ 1.69
SNX3-201ENST00000230085 PNNQ9H307 717 aaKnown RBP25.59■■□□□ 1.69
SNX3-201ENST00000230085 PLEKHO1Q53GL0 409 aaPredicted RBP25.59■■□□□ 1.69
SNX3-201ENST00000230085 MARCH10Q8NA82 808 aaPredicted RBP25.59■■□□□ 1.69
SNX3-201ENST00000230085 SSH1Q8WYL5 1049 aa25.59■■□□□ 1.69
SNX3-201ENST00000230085 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.59■■□□□ 1.69
SNX3-201ENST00000230085 SPG7Q9UQ90 795 aa25.59■■□□□ 1.69
SNX3-201ENST00000230085 CHMP4BQ9H444 224 aaKnown RBP25.58■■□□□ 1.69
SNX3-201ENST00000230085 EXOSC9Q06265 439 aaKnown RBP25.57■■□□□ 1.68
SNX3-201ENST00000230085 AMOTQ4VCS5 1084 aa25.57■■□□□ 1.68
SNX3-201ENST00000230085 PKD1L3Q7Z443 1732 aa25.57■■□□□ 1.68
SNX3-201ENST00000230085 SHANK3Q9BYB0 1731 aa25.57■■□□□ 1.68
SNX3-201ENST00000230085 CYP27B1O15528 508 aa25.56■■□□□ 1.68
SNX3-201ENST00000230085 MTHFSDQ2M296 383 aaKnown RBP25.56■■□□□ 1.68
SNX3-201ENST00000230085 BMP2KLQ5H9B9 411 aa25.56■■□□□ 1.68
SNX3-201ENST00000230085 ILDR2Q71H61 639 aa25.56■■□□□ 1.68
SNX3-201ENST00000230085 EIF5BO60841 1220 aaKnown RBP25.56■■□□□ 1.68
SNX3-201ENST00000230085 SKOR2Q2VWA4 1001 aaPredicted RBP25.55■■□□□ 1.68
SNX3-201ENST00000230085 PCDH11XQ9BZA7 1347 aa25.55■■□□□ 1.68
SNX3-201ENST00000230085 PCDH11YQ9BZA8 1340 aa25.55■■□□□ 1.68
SNX3-201ENST00000230085 PLEKHG2Q9H7P9 1386 aa25.54■■□□□ 1.68
SNX3-201ENST00000230085 MFAP1P55081 439 aaKnown RBP25.54■■□□□ 1.68
SNX3-201ENST00000230085 CLEC17AQ6ZS10 378 aa25.54■■□□□ 1.68
SNX3-201ENST00000230085 ZNF530Q6P9A1 599 aaPredicted RBP25.53■■□□□ 1.68
SNX3-201ENST00000230085 IBTKQ9P2D0 1353 aaPredicted RBP25.52■■□□□ 1.68
SNX3-201ENST00000230085 PHKG2P15735 406 aa25.51■■□□□ 1.67
SNX3-201ENST00000230085 ARHGAP45Q92619 1136 aa25.51■■□□□ 1.67
SNX3-201ENST00000230085 RAB3GAP1Q15042 981 aa25.51■■□□□ 1.67
SNX3-201ENST00000230085 ITPRIPQ8IWB1 547 aa25.51■■□□□ 1.67
SNX3-201ENST00000230085 IFNL2Q8IZJ0 200 aa25.51■■□□□ 1.67
SNX3-201ENST00000230085 GRPEL1Q9HAV7 217 aa25.51■■□□□ 1.67
SNX3-201ENST00000230085 TSR2Q969E8 191 aaKnown RBP25.5■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms