RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 ZSCAN30Q86W11 494 aa15.86■□□□□ 0.13
SF3A1-201ENST00000215793 THUMPD2Q9BTF0 503 aaKnown RBP15.86■□□□□ 0.13
SF3A1-201ENST00000215793 TOPBP1Q92547 1522 aa15.86■□□□□ 0.13
SF3A1-201ENST00000215793 PLEKHH1Q9ULM0 1364 aa15.86■□□□□ 0.13
SF3A1-201ENST00000215793 PRPF40BQ6NWY9 871 aaKnown RBP15.86■□□□□ 0.13
SF3A1-201ENST00000215793 NUTM2BA6NNL0 878 aaPredicted RBP15.86■□□□□ 0.13
SF3A1-201ENST00000215793 NUTM2EB1AL46 878 aaPredicted RBP15.86■□□□□ 0.13
SF3A1-201ENST00000215793 ZNF76P36508 570 aa15.86■□□□□ 0.13
SF3A1-201ENST00000215793 FERMT3Q86UX7 667 aa15.86■□□□□ 0.13
SF3A1-201ENST00000215793 NUTM2AQ8IVF1 878 aaPredicted RBP15.86■□□□□ 0.13
SF3A1-201ENST00000215793 CCDC83Q8IWF9 413 aa15.86■□□□□ 0.13
SF3A1-201ENST00000215793 WDR97A6NE52 1622 aa15.86■□□□□ 0.13
SF3A1-201ENST00000215793 SYCE3A1L190 88 aa15.85■□□□□ 0.13
SF3A1-201ENST00000215793 DCAF8L1A6NGE4 600 aa15.85■□□□□ 0.13
SF3A1-201ENST00000215793 ANO10Q9NW15 660 aa15.85■□□□□ 0.13
SF3A1-201ENST00000215793 NKTRP30414 1462 aaKnown RBP15.85■□□□□ 0.13
SF3A1-201ENST00000215793 SFPQP23246 707 aaKnown RBP eCLIP15.85■□□□□ 0.13
SF3A1-201ENST00000215793 UBXN4Q92575 508 aa15.85■□□□□ 0.13
SF3A1-201ENST00000215793 TAF4BQ92750 862 aa15.85■□□□□ 0.13
SF3A1-201ENST00000215793 MIS18AQ9NYP9 233 aa15.85■□□□□ 0.13
SF3A1-201ENST00000215793 TMOD2Q9NZR1 351 aa15.85■□□□□ 0.13
SF3A1-201ENST00000215793 UQCRHLA0A096LP55 91 aa15.84■□□□□ 0.13
SF3A1-201ENST00000215793 UQCRHP07919 91 aa15.84■□□□□ 0.13
SF3A1-201ENST00000215793 ZNF397Q8NF99 534 aaPredicted RBP15.84■□□□□ 0.13
SF3A1-201ENST00000215793 CCDC85AQ96PX6 553 aaPredicted RBP15.84■□□□□ 0.13
SF3A1-201ENST00000215793 PDCL2Q8N4E4 241 aa15.84■□□□□ 0.13
SF3A1-201ENST00000215793 TOP2BQ02880 1626 aa15.84■□□□□ 0.13
SF3A1-201ENST00000215793 PPP1R12BO60237 982 aaPredicted RBP15.84■□□□□ 0.13
SF3A1-201ENST00000215793 CALRP27797 417 aaKnown RBP15.84■□□□□ 0.13
SF3A1-201ENST00000215793 CAVIN4Q5BKX8 364 aa15.84■□□□□ 0.13
SF3A1-201ENST00000215793 LRRFIP2Q9Y608 721 aaKnown RBP15.84■□□□□ 0.13
SF3A1-201ENST00000215793 DESP17661 470 aa15.84■□□□□ 0.13
SF3A1-201ENST00000215793 KIAA1328Q86T90 577 aa15.83■□□□□ 0.13
SF3A1-201ENST00000215793 NAPBQ9H115 298 aa15.83■□□□□ 0.13
SF3A1-201ENST00000215793 BOLA2Q9H3K6 86 aa15.83■□□□□ 0.13
SF3A1-201ENST00000215793 PHAXQ9H814 394 aaKnown RBP15.83■□□□□ 0.13
SF3A1-201ENST00000215793 EPRSP07814 1512 aaKnown RBP15.83■□□□□ 0.13
SF3A1-201ENST00000215793 CCDC183Q5T5S1 534 aa15.83■□□□□ 0.13
SF3A1-201ENST00000215793 IL27Q8NEV9 243 aa15.83■□□□□ 0.13
SF3A1-201ENST00000215793 SNAPC4Q5SXM2 1469 aa15.83■□□□□ 0.12
SF3A1-201ENST00000215793 KIAA0586Q9BVV6 1533 aa15.83■□□□□ 0.12
SF3A1-201ENST00000215793 GBP3Q9H0R5 595 aa15.83■□□□□ 0.12
SF3A1-201ENST00000215793 SEPT11Q9NVA2 429 aaKnown RBP15.83■□□□□ 0.12
SF3A1-201ENST00000215793 XPCQ01831 940 aaPredicted RBP15.82■□□□□ 0.12
SF3A1-201ENST00000215793 HSP90AB3PQ58FF7 597 aa15.82■□□□□ 0.12
SF3A1-201ENST00000215793 DNAAF4Q8WXU2 420 aa15.82■□□□□ 0.12
SF3A1-201ENST00000215793 ZSCAN12O43309 604 aa15.82■□□□□ 0.12
SF3A1-201ENST00000215793 PTCD1O75127 700 aaKnown RBP15.82■□□□□ 0.12
SF3A1-201ENST00000215793 MAP3K12Q12852 859 aa15.82■□□□□ 0.12
SF3A1-201ENST00000215793 C8orf76Q96K31 380 aa15.82■□□□□ 0.12
SF3A1-201ENST00000215793 TMOD3Q9NYL9 352 aa15.82■□□□□ 0.12
SF3A1-201ENST00000215793 CTCFLQ8NI51 663 aaPredicted RBP15.82■□□□□ 0.12
SF3A1-201ENST00000215793 DBF4Q9UBU7 674 aaPredicted RBP15.82■□□□□ 0.12
SF3A1-201ENST00000215793 SEC63Q9UGP8 760 aaKnown RBP15.82■□□□□ 0.12
SF3A1-201ENST00000215793 USP5P45974 858 aa15.82■□□□□ 0.12
SF3A1-201ENST00000215793 CCDC148Q8NFR7 591 aa15.82■□□□□ 0.12
SF3A1-201ENST00000215793 PPP1R1BQ9UD71 204 aaPredicted RBP15.82■□□□□ 0.12
SF3A1-201ENST00000215793 LIMCH1Q9UPQ0 1083 aa15.82■□□□□ 0.12
SF3A1-201ENST00000215793 CTAGE5O15320 804 aa15.82■□□□□ 0.12
SF3A1-201ENST00000215793 IFIT5Q13325 482 aaKnown RBP15.82■□□□□ 0.12
SF3A1-201ENST00000215793 SMARCA5O60264 1052 aaPredicted RBP15.81■□□□□ 0.12
SF3A1-201ENST00000215793 WAPLQ7Z5K2 1190 aa15.81■□□□□ 0.12
SF3A1-201ENST00000215793 PTPRCP08575 1304 aa15.81■□□□□ 0.12
SF3A1-201ENST00000215793 JAKMIP3Q5VZ66 844 aa15.81■□□□□ 0.12
SF3A1-201ENST00000215793 MYD88Q99836 296 aa15.81■□□□□ 0.12
SF3A1-201ENST00000215793 HYPKQ9NX55 129 aa15.81■□□□□ 0.12
SF3A1-201ENST00000215793 CENPHQ9H3R5 247 aa15.81■□□□□ 0.12
SF3A1-201ENST00000215793 BICDL1Q6ZP65 573 aa15.81■□□□□ 0.12
SF3A1-201ENST00000215793 IQCA1Q86XH1 822 aa15.81■□□□□ 0.12
SF3A1-201ENST00000215793 MKNK2Q9HBH9 465 aa15.81■□□□□ 0.12
SF3A1-201ENST00000215793 SPINK5Q9NQ38 1064 aaPredicted RBP15.81■□□□□ 0.12
SF3A1-201ENST00000215793 ENOX2Q16206 610 aaKnown RBP15.8■□□□□ 0.12
SF3A1-201ENST00000215793 RNF41Q9H4P4 317 aaPredicted RBP15.8■□□□□ 0.12
SF3A1-201ENST00000215793 LRPPRCP42704 1394 aaKnown RBP15.8■□□□□ 0.12
SF3A1-201ENST00000215793 ANKRD62A6NC57 917 aa15.8■□□□□ 0.12
SF3A1-201ENST00000215793 MPHOSPH10O00566 681 aaKnown RBP15.8■□□□□ 0.12
SF3A1-201ENST00000215793 EZRP15311 586 aaKnown RBP15.8■□□□□ 0.12
SF3A1-201ENST00000215793 CETN2P41208 172 aa15.8■□□□□ 0.12
SF3A1-201ENST00000215793 PTPN14Q15678 1187 aa15.8■□□□□ 0.12
SF3A1-201ENST00000215793 RAB34Q9BZG1 259 aa15.8■□□□□ 0.12
SF3A1-201ENST00000215793 MINDY4BA8MYZ0 360 aa15.8■□□□□ 0.12
SF3A1-201ENST00000215793 CAMK4Q16566 473 aa15.8■□□□□ 0.12
SF3A1-201ENST00000215793 PIBF1Q8WXW3 757 aa15.8■□□□□ 0.12
SF3A1-201ENST00000215793 NESP48681 1621 aa15.8■□□□□ 0.12
SF3A1-201ENST00000215793 POTEJP0CG39 1038 aa15.8■□□□□ 0.12
SF3A1-201ENST00000215793 TAX1BP1Q86VP1 789 aa15.8■□□□□ 0.12
SF3A1-201ENST00000215793 SPA17Q15506 151 aa15.79■□□□□ 0.12
SF3A1-201ENST00000215793 POLR3DP05423 398 aaPredicted RBP15.79■□□□□ 0.12
SF3A1-201ENST00000215793 FKBP15Q5T1M5 1219 aa15.79■□□□□ 0.12
SF3A1-201ENST00000215793 NME9Q86XW9 330 aa15.79■□□□□ 0.12
SF3A1-201ENST00000215793 DHX29Q7Z478 1369 aaKnown RBP15.79■□□□□ 0.12
SF3A1-201ENST00000215793 ZNF213O14771 459 aa15.79■□□□□ 0.12
SF3A1-201ENST00000215793 TNIP1Q15025 636 aa15.79■□□□□ 0.12
SF3A1-201ENST00000215793 CCDC102AQ96A19 550 aa15.78■□□□□ 0.12
SF3A1-201ENST00000215793 NSD2O96028 1365 aa15.78■□□□□ 0.12
SF3A1-201ENST00000215793 C20orf194Q5TEA3 1177 aa15.78■□□□□ 0.12
SF3A1-201ENST00000215793 KIF18AQ8NI77 898 aa15.78■□□□□ 0.12
SF3A1-201ENST00000215793 TMCO3Q6UWJ1 677 aa15.78■□□□□ 0.12
SF3A1-201ENST00000215793 MAGI1Q96QZ7 1491 aaPredicted RBP15.77■□□□□ 0.12
SF3A1-201ENST00000215793 FGFR1OPO95684 399 aaKnown RBP15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms