RNA–Protein interactions for RNA: ENSMUST00000022220.12

Msh3-201, Transcript of DNA mismatch repair protein Msh3, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Msh3, Length 3,937 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3-201ENSMUST00000022220 Lekr1B2RVN1 116 aa13.02□□□□□ -0.33
Msh3-201ENSMUST00000022220 Ppip5k2Q6ZQB6 1129 aa13.02□□□□□ -0.33
Msh3-201ENSMUST00000022220 Olfml1Q8BSH2 233 aa13.02□□□□□ -0.33
Msh3-201ENSMUST00000022220 Slc26a8Q8R0C3 999 aa13.02□□□□□ -0.33
Msh3-201ENSMUST00000022220 PnnO35691 725 aaKnown RBP13.02□□□□□ -0.33
Msh3-201ENSMUST00000022220 Atp6v1dP57746 247 aa13.02□□□□□ -0.33
Msh3-201ENSMUST00000022220 VeztQ3ZK22 780 aa13.02□□□□□ -0.33
Msh3-201ENSMUST00000022220 Soga3Q6NZL0 945 aa13.02□□□□□ -0.33
Msh3-201ENSMUST00000022220 Tshz3Q8CGV9 1081 aa13.02□□□□□ -0.33
Msh3-201ENSMUST00000022220 Rrs1Q9CYH6 365 aaKnown RBP13.02□□□□□ -0.33
Msh3-201ENSMUST00000022220 Smarce1O54941 411 aaKnown RBP13.01□□□□□ -0.33
Msh3-201ENSMUST00000022220 Flad1Q8R123 492 aa13.01□□□□□ -0.33
Msh3-201ENSMUST00000022220 Rbm5Q91YE7 815 aaKnown RBP13.01□□□□□ -0.33
Msh3-201ENSMUST00000022220 Utp3Q9JI13 469 aaKnown RBP13.01□□□□□ -0.33
Msh3-201ENSMUST00000022220 Lamc1P02468 1607 aaKnown RBP13.01□□□□□ -0.33
Msh3-201ENSMUST00000022220 Gm10093D3YYI8 482 aa13.01□□□□□ -0.33
Msh3-201ENSMUST00000022220 Hdac1O09106 482 aaKnown RBP13.01□□□□□ -0.33
Msh3-201ENSMUST00000022220 PzpQ61838 1495 aa13□□□□□ -0.33
Msh3-201ENSMUST00000022220 Erbb4Q61527 1308 aa13□□□□□ -0.33
Msh3-201ENSMUST00000022220 Ltv1Q6NSQ7 470 aaKnown RBP13□□□□□ -0.33
Msh3-201ENSMUST00000022220 ImpactO55091 318 aa13□□□□□ -0.33
Msh3-201ENSMUST00000022220 Tbc1d9Q3UYK3 1264 aa13□□□□□ -0.33
Msh3-201ENSMUST00000022220 Trim27Q62158 513 aa13□□□□□ -0.33
Msh3-201ENSMUST00000022220 Polr3gQ6NXY9 223 aa13□□□□□ -0.33
Msh3-201ENSMUST00000022220 Usp19Q3UJD6 1360 aa13□□□□□ -0.33
Msh3-201ENSMUST00000022220 PaskQ8CEE6 1383 aa13□□□□□ -0.33
Msh3-201ENSMUST00000022220 Mad1l1Q9WTX8 717 aaKnown RBP13□□□□□ -0.33
Msh3-201ENSMUST00000022220 Col17a1Q07563 1470 aa13□□□□□ -0.33
Msh3-201ENSMUST00000022220 Abl1P00520 1123 aa12.99□□□□□ -0.33
Msh3-201ENSMUST00000022220 Gnl3lQ6PGG6 577 aaKnown RBP12.99□□□□□ -0.33
Msh3-201ENSMUST00000022220 Glipr1l2Q9CQ35 332 aa12.99□□□□□ -0.33
Msh3-201ENSMUST00000022220 NhsB1AV60 1647 aa12.99□□□□□ -0.33
Msh3-201ENSMUST00000022220 Pa2g4P50580 394 aaKnown RBP12.99□□□□□ -0.33
Msh3-201ENSMUST00000022220 Zbtb45Q52KG4 520 aa12.99□□□□□ -0.33
Msh3-201ENSMUST00000022220 Brf1Q8CFK2 676 aa12.99□□□□□ -0.33
Msh3-201ENSMUST00000022220 Serpina10Q8R121 448 aa12.99□□□□□ -0.33
Msh3-201ENSMUST00000022220 Atp10aO54827 1508 aa12.99□□□□□ -0.33
Msh3-201ENSMUST00000022220 Trpm2Q91YD4 1506 aa12.99□□□□□ -0.33
Msh3-201ENSMUST00000022220 Ppm1fQ8CGA0 452 aa12.99□□□□□ -0.33
Msh3-201ENSMUST00000022220 Uhrf1bp1lA2RSJ4 1457 aa12.98□□□□□ -0.33
Msh3-201ENSMUST00000022220 Smc3Q9CW03 1217 aaKnown RBP12.98□□□□□ -0.33
Msh3-201ENSMUST00000022220 Gm32742A0A1B0GT42 1604 aa12.98□□□□□ -0.33
Msh3-201ENSMUST00000022220 CrcpO35427 148 aa12.98□□□□□ -0.33
Msh3-201ENSMUST00000022220 Cers3Q1A3B0 383 aa12.98□□□□□ -0.33
Msh3-201ENSMUST00000022220 Wdr63B2RY71 923 aa12.98□□□□□ -0.33
Msh3-201ENSMUST00000022220 Irf9Q61179 399 aa12.98□□□□□ -0.33
Msh3-201ENSMUST00000022220 Trim28Q62318 834 aa12.98□□□□□ -0.33
Msh3-201ENSMUST00000022220 GckrQ91X44 587 aa12.98□□□□□ -0.33
Msh3-201ENSMUST00000022220 Il1rapl2Q9ERS6 686 aa12.98□□□□□ -0.33
Msh3-201ENSMUST00000022220 Kif21bQ9QXL1 1668 aa12.98□□□□□ -0.33
Msh3-201ENSMUST00000022220 Setbp1Q9Z180 1582 aa12.97□□□□□ -0.33
Msh3-201ENSMUST00000022220 Ccdc173A0JLY1 547 aa12.97□□□□□ -0.33
Msh3-201ENSMUST00000022220 RdxP26043 583 aaKnown RBP12.97□□□□□ -0.33
Msh3-201ENSMUST00000022220 Prkab2Q6PAM0 271 aa12.97□□□□□ -0.33
Msh3-201ENSMUST00000022220 Uggt2E9Q4X2 1504 aa12.97□□□□□ -0.33
Msh3-201ENSMUST00000022220 Ccer1Q9CQL2 403 aa12.97□□□□□ -0.33
Msh3-201ENSMUST00000022220 Astn2Q80Z10 1352 aa12.97□□□□□ -0.33
Msh3-201ENSMUST00000022220 AnkarA2RT91 1465 aa12.97□□□□□ -0.33
Msh3-201ENSMUST00000022220 Abca8bQ8K440 1620 aa12.97□□□□□ -0.33
Msh3-201ENSMUST00000022220 Cavin1O54724 392 aa12.97□□□□□ -0.33
Msh3-201ENSMUST00000022220 KinQ8K339 391 aa12.97□□□□□ -0.33
Msh3-201ENSMUST00000022220 Amotl1Q9D4H4 968 aa12.97□□□□□ -0.33
Msh3-201ENSMUST00000022220 Tpd52l1O54818 204 aa12.96□□□□□ -0.33
Msh3-201ENSMUST00000022220 Ccnl1Q52KE7 532 aaKnown RBP12.96□□□□□ -0.33
Msh3-201ENSMUST00000022220 Wwc1Q5SXA9 1104 aa12.96□□□□□ -0.33
Msh3-201ENSMUST00000022220 Dmrt2Q8BG36 561 aa12.96□□□□□ -0.33
Msh3-201ENSMUST00000022220 ZgpatQ8VDM1 511 aa12.96□□□□□ -0.33
Msh3-201ENSMUST00000022220 Nsd3Q6P2L6 1439 aa12.96□□□□□ -0.33
Msh3-201ENSMUST00000022220 Wdr78E9PYY5 807 aa12.96□□□□□ -0.33
Msh3-201ENSMUST00000022220 ThemisQ8BGW0 636 aa12.96□□□□□ -0.33
Msh3-201ENSMUST00000022220 Lmbr1lQ9D1E5 489 aa12.96□□□□□ -0.33
Msh3-201ENSMUST00000022220 Ccdc94Q9D6J3 314 aa12.96□□□□□ -0.33
Msh3-201ENSMUST00000022220 Ttc21aQ8C0S4 1314 aa12.96□□□□□ -0.33
Msh3-201ENSMUST00000022220 Ppfia3P60469 1194 aa12.95□□□□□ -0.34
Msh3-201ENSMUST00000022220 Cpa2Q504N0 417 aa12.95□□□□□ -0.34
Msh3-201ENSMUST00000022220 Rnf20Q5DTM8 973 aa12.95□□□□□ -0.34
Msh3-201ENSMUST00000022220 Klf15Q9EPW2 415 aa12.95□□□□□ -0.34
Msh3-201ENSMUST00000022220 Robo2Q7TPD3 1470 aa12.95□□□□□ -0.34
Msh3-201ENSMUST00000022220 CrklP47941 303 aa12.95□□□□□ -0.34
Msh3-201ENSMUST00000022220 GptQ8QZR5 496 aa12.95□□□□□ -0.34
Msh3-201ENSMUST00000022220 Rapgef3Q8VCC8 918 aa12.95□□□□□ -0.34
Msh3-201ENSMUST00000022220 Top1mtQ8R4U6 593 aa12.94□□□□□ -0.34
Msh3-201ENSMUST00000022220 Noc3lQ8VI84 807 aaKnown RBP12.94□□□□□ -0.34
Msh3-201ENSMUST00000022220 KdrP35918 1367 aa12.94□□□□□ -0.34
Msh3-201ENSMUST00000022220 Abca6Q8K441 1624 aa12.94□□□□□ -0.34
Msh3-201ENSMUST00000022220 Hs1bp3Q3TC93 395 aa12.94□□□□□ -0.34
Msh3-201ENSMUST00000022220 Sf3a1Q8K4Z5 791 aaKnown RBP12.94□□□□□ -0.34
Msh3-201ENSMUST00000022220 Echdc1Q9D9V3 322 aa12.94□□□□□ -0.34
Msh3-201ENSMUST00000022220 Elp1Q7TT37 1333 aaKnown RBP12.93□□□□□ -0.34
Msh3-201ENSMUST00000022220 Adamts13Q769J6 1426 aa12.93□□□□□ -0.34
Msh3-201ENSMUST00000022220 Brd1E9PZ26 1189 aaKnown RBP12.93□□□□□ -0.34
Msh3-201ENSMUST00000022220 Chd1lQ9CXF7 900 aa12.93□□□□□ -0.34
Msh3-201ENSMUST00000022220 Myd88P22366 296 aa12.93□□□□□ -0.34
Msh3-201ENSMUST00000022220 Exoc5Q3TPX4 708 aa12.93□□□□□ -0.34
Msh3-201ENSMUST00000022220 Pof1bQ8K4L4 587 aa12.93□□□□□ -0.34
Msh3-201ENSMUST00000022220 Trim34aQ99PP6 485 aa12.93□□□□□ -0.34
Msh3-201ENSMUST00000022220 Efcab2Q9CQ46 164 aa12.93□□□□□ -0.34
Msh3-201ENSMUST00000022220 Q9D9S1 216 aa12.93□□□□□ -0.34
Msh3-201ENSMUST00000022220 NgdnQ9DB96 315 aaKnown RBP12.93□□□□□ -0.34
Msh3-201ENSMUST00000022220 Rapgef4Q9EQZ6 1011 aa12.93□□□□□ -0.34
Retrieved 100 of 22,080 RNA–protein pairs in 103.8 ms