Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SIX4Q9UIU6 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
SIX4Q9UIU6 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC20.08■□□□□ 0.8
SIX4Q9UIU6 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SIX4Q9UIU6 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
SIX4Q9UIU6 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SIX4Q9UIU6 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SIX4Q9UIU6 BX323043.1-201ENST00000641006 1765 ntBASIC20.08■□□□□ 0.8
SIX4Q9UIU6 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SIX4Q9UIU6 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
SIX4Q9UIU6 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SIX4Q9UIU6 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SIX4Q9UIU6 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC20.07■□□□□ 0.8
SIX4Q9UIU6 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SIX4Q9UIU6 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SIX4Q9UIU6 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC20.07■□□□□ 0.8
SIX4Q9UIU6 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SIX4Q9UIU6 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
SIX4Q9UIU6 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
SIX4Q9UIU6 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SIX4Q9UIU6 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SIX4Q9UIU6 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SIX4Q9UIU6 GAD2-202ENST00000376248 680 ntTSL 5 BASIC20.07■□□□□ 0.8
SIX4Q9UIU6 RNF152P1-201ENST00000397754 604 ntBASIC20.07■□□□□ 0.8
SIX4Q9UIU6 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SIX4Q9UIU6 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC20.07■□□□□ 0.8
SIX4Q9UIU6 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC20.07■□□□□ 0.8
SIX4Q9UIU6 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC20.07■□□□□ 0.8
SIX4Q9UIU6 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC20.07■□□□□ 0.8
SIX4Q9UIU6 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC20.07■□□□□ 0.8
SIX4Q9UIU6 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC20.07■□□□□ 0.8
SIX4Q9UIU6 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
SIX4Q9UIU6 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SIX4Q9UIU6 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SIX4Q9UIU6 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SIX4Q9UIU6 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SIX4Q9UIU6 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SIX4Q9UIU6 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
SIX4Q9UIU6 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SIX4Q9UIU6 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
SIX4Q9UIU6 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC20.06■□□□□ 0.8
SIX4Q9UIU6 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SIX4Q9UIU6 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
SIX4Q9UIU6 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC20.06■□□□□ 0.8
SIX4Q9UIU6 TSPY5P-201ENST00000426936 936 ntBASIC20.06■□□□□ 0.8
SIX4Q9UIU6 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC20.06■□□□□ 0.8
SIX4Q9UIU6 SEC1P-202ENST00000473944 940 ntBASIC20.06■□□□□ 0.8
SIX4Q9UIU6 AC063952.2-201ENST00000498792 1227 ntBASIC20.06■□□□□ 0.8
SIX4Q9UIU6 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC20.06■□□□□ 0.8
SIX4Q9UIU6 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC20.06■□□□□ 0.8
SIX4Q9UIU6 LTBR-211ENST00000543190 785 ntTSL 3 BASIC20.06■□□□□ 0.8
SIX4Q9UIU6 HOXB1-202ENST00000577092 1414 ntBASIC20.06■□□□□ 0.8
SIX4Q9UIU6 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC20.06■□□□□ 0.8
SIX4Q9UIU6 AC024243.1-201ENST00000609234 778 ntBASIC20.06■□□□□ 0.8
SIX4Q9UIU6 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SIX4Q9UIU6 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SIX4Q9UIU6 AC093525.10-201ENST00000625130 1569 ntBASIC20.06■□□□□ 0.8
SIX4Q9UIU6 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC20.06■□□□□ 0.8
SIX4Q9UIU6 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
SIX4Q9UIU6 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SIX4Q9UIU6 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SIX4Q9UIU6 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC20.06■□□□□ 0.8
SIX4Q9UIU6 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SIX4Q9UIU6 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SIX4Q9UIU6 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
SIX4Q9UIU6 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SIX4Q9UIU6 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SIX4Q9UIU6 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SIX4Q9UIU6 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SIX4Q9UIU6 COBL-210ENST00000632460 1941 ntTSL 5 BASIC20.06■□□□□ 0.8
SIX4Q9UIU6 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
SIX4Q9UIU6 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.05■□□□□ 0.8
SIX4Q9UIU6 AC034236.2-201ENST00000606662 1610 ntBASIC20.05■□□□□ 0.8
SIX4Q9UIU6 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SIX4Q9UIU6 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SIX4Q9UIU6 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SIX4Q9UIU6 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SIX4Q9UIU6 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC20.05■□□□□ 0.8
SIX4Q9UIU6 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC20.05■□□□□ 0.8
SIX4Q9UIU6 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SIX4Q9UIU6 AP000523.1-201ENST00000398242 1049 ntBASIC20.05■□□□□ 0.8
SIX4Q9UIU6 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC20.05■□□□□ 0.8
SIX4Q9UIU6 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC20.05■□□□□ 0.8
SIX4Q9UIU6 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC20.05■□□□□ 0.8
SIX4Q9UIU6 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC20.05■□□□□ 0.8
SIX4Q9UIU6 AL049597.2-201ENST00000565575 961 ntBASIC20.05■□□□□ 0.8
SIX4Q9UIU6 AC140113.3-201ENST00000605663 199 ntBASIC20.05■□□□□ 0.8
SIX4Q9UIU6 AC112497.1-201ENST00000624824 639 ntBASIC20.05■□□□□ 0.8
SIX4Q9UIU6 AL031432.5-201ENST00000641059 760 ntBASIC20.05■□□□□ 0.8
SIX4Q9UIU6 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SIX4Q9UIU6 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC20.05■□□□□ 0.8
SIX4Q9UIU6 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SIX4Q9UIU6 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
SIX4Q9UIU6 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SIX4Q9UIU6 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SIX4Q9UIU6 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC20.04■□□□□ 0.8
SIX4Q9UIU6 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SIX4Q9UIU6 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC20.04■□□□□ 0.8
SIX4Q9UIU6 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SIX4Q9UIU6 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms