Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ABHD17AP6-201ENST00000458502 1044 ntBASIC16.39■□□□□ 0.21
NKX3-1Q99801 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC16.39■□□□□ 0.21
NKX3-1Q99801 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC16.39■□□□□ 0.21
NKX3-1Q99801 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC16.39■□□□□ 0.21
NKX3-1Q99801 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
NKX3-1Q99801 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
NKX3-1Q99801 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NKX3-1Q99801 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
NKX3-1Q99801 NOC2LP1-202ENST00000452600 2235 ntBASIC16.39■□□□□ 0.21
NKX3-1Q99801 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
NKX3-1Q99801 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
NKX3-1Q99801 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
NKX3-1Q99801 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NKX3-1Q99801 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NKX3-1Q99801 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
NKX3-1Q99801 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC16.39■□□□□ 0.21
NKX3-1Q99801 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC16.39■□□□□ 0.21
NKX3-1Q99801 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
NKX3-1Q99801 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC16.39■□□□□ 0.21
NKX3-1Q99801 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NKX3-1Q99801 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
NKX3-1Q99801 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NKX3-1Q99801 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
NKX3-1Q99801 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
NKX3-1Q99801 AL499627.1-201ENST00000569373 2188 ntBASIC16.38■□□□□ 0.21
NKX3-1Q99801 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC16.38■□□□□ 0.21
NKX3-1Q99801 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC16.38■□□□□ 0.21
NKX3-1Q99801 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC16.38■□□□□ 0.21
NKX3-1Q99801 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
NKX3-1Q99801 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC16.38■□□□□ 0.21
NKX3-1Q99801 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
NKX3-1Q99801 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
NKX3-1Q99801 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
NKX3-1Q99801 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
NKX3-1Q99801 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
NKX3-1Q99801 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
NKX3-1Q99801 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC16.38■□□□□ 0.21
NKX3-1Q99801 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC16.38■□□□□ 0.21
NKX3-1Q99801 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
NKX3-1Q99801 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC16.38■□□□□ 0.21
NKX3-1Q99801 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
NKX3-1Q99801 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC16.38■□□□□ 0.21
NKX3-1Q99801 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
NKX3-1Q99801 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
NKX3-1Q99801 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
NKX3-1Q99801 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
NKX3-1Q99801 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
NKX3-1Q99801 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC16.38■□□□□ 0.21
NKX3-1Q99801 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
NKX3-1Q99801 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
NKX3-1Q99801 MADD-208ENST00000405573 1823 ntTSL 5 BASIC16.38■□□□□ 0.21
NKX3-1Q99801 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
NKX3-1Q99801 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
NKX3-1Q99801 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
NKX3-1Q99801 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
NKX3-1Q99801 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
NKX3-1Q99801 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
NKX3-1Q99801 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.37■□□□□ 0.21
NKX3-1Q99801 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
NKX3-1Q99801 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC16.37■□□□□ 0.21
NKX3-1Q99801 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
NKX3-1Q99801 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
NKX3-1Q99801 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
NKX3-1Q99801 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
NKX3-1Q99801 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
NKX3-1Q99801 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
NKX3-1Q99801 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
NKX3-1Q99801 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC16.37■□□□□ 0.21
NKX3-1Q99801 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC16.37■□□□□ 0.21
NKX3-1Q99801 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
NKX3-1Q99801 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
NKX3-1Q99801 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
NKX3-1Q99801 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
NKX3-1Q99801 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC16.37■□□□□ 0.21
NKX3-1Q99801 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC16.37■□□□□ 0.21
NKX3-1Q99801 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC16.37■□□□□ 0.21
NKX3-1Q99801 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC16.37■□□□□ 0.21
NKX3-1Q99801 THEM4-205ENST00000489410 643 ntTSL 2 BASIC16.37■□□□□ 0.21
NKX3-1Q99801 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC16.37■□□□□ 0.21
NKX3-1Q99801 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC16.37■□□□□ 0.21
NKX3-1Q99801 AC008687.6-201ENST00000596318 630 ntBASIC16.37■□□□□ 0.21
NKX3-1Q99801 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
NKX3-1Q99801 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC16.37■□□□□ 0.21
NKX3-1Q99801 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC16.37■□□□□ 0.21
NKX3-1Q99801 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
NKX3-1Q99801 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC16.37■□□□□ 0.21
NKX3-1Q99801 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
NKX3-1Q99801 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC16.37■□□□□ 0.21
NKX3-1Q99801 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
NKX3-1Q99801 COBL-210ENST00000632460 1941 ntTSL 5 BASIC16.37■□□□□ 0.21
NKX3-1Q99801 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
NKX3-1Q99801 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC16.37■□□□□ 0.21
NKX3-1Q99801 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
NKX3-1Q99801 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
NKX3-1Q99801 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
NKX3-1Q99801 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC16.36■□□□□ 0.21
NKX3-1Q99801 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
NKX3-1Q99801 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
NKX3-1Q99801 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC16.36■□□□□ 0.21
NKX3-1Q99801 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms